BAC Information

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BAC

Clone NameB6Ng01-053A22
Chromosome18 (Build37)
Map Location 17,928,771 - 18,089,918
singlet/doubletdoublet
Overlap geneLOC100040647
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053A22.bB6Ng01-053A22.g
ACCDH876219DH876220
length1,0821,111
definitionDH876219|Mus musculus domesticus DNA, BAC clone: B6Ng01-053A22, 5' end.DH876220|Mus musculus domesticus DNA, BAC clone: B6Ng01-053A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,928,771 - 17,929,858)(18,088,807 - 18,089,918)
sequence
gaattccaatggatgaatagctcctacctgaaacagtgtgaatggctttc
aaactttcttttttctttttttttttttctgaagaaaaaagtaagagcct
aggccactaggctagaaaaatgtttaaaaagaaagggtgtggagagataa
tcagtcagctaacttctttcacctcataagagaaaatgatgaaatgtatt
aaactcaatccccagaaccatattacccattctcagaaagtcaatataac
aaagcaaatggattttctagtctgtgtgtgtgtgcatgtgtagttcagtc
tacagaataaattgaaggagaaataaaaggagttatttttctgtcgcatc
gagtcattgatggtttgaatttggtccttaaagtaggcagacttttttta
atcagaaaaacatgtgcctaagtaacctagtgatttttgtcctccgaaaa
gagtcatcacctgatttccagcctaggtctttctctatgtgcttcagtct
ggataaacatagtcagtataactttcaatcagtgagagttcctaacaagc
aaaaccacgtgaagatctttgcccattgcagcccgagatgttacagaggg
ttttctccttgtctgatcttccttctaaagaacaactatgcttgaactat
gcagaagcgtagagggagaagcagagaaatgagagaagccagcaagcaga
tggcttaattgtctagttcattccatccatcactgaggcatgtgctattt
tggcattctaggaaacattatatccaggaacagcaggagtgactgttaga
gccaaggtctagatttctatggtagtgccattgactggcaacactgaata
gcaactgcatagatgaaactaaacagtagttggtaccacagataattgta
ttaaatgcctgccatcataagcctaatggtattaacttttaggtagctac
cagcataatctttacttgtctttacatcatttgaaattatgggaatatct
tgtaagtggttgaacattattaaaccataggatttaatatgataaatcct
actgggcgtctgtgtgtgttgcatgcatacac
gaattcatagatttacagaatgtcaggtctcatatgaagaaaagaagaac
atatgaaaattgatcataatgacaagtatcatagaatagtctgttctgcc
atggtcaccttcaatgtaactctactcagcaaaagtcactcaggaaacag
tcactaaaaccctagtgtagaatggctataatcagtgctgcttcaaattc
taaaaggaaaatgagtttatttaattcctttcttgtctccatcacattta
tcagaaaacagttatattatgaatgagccctatccaatacaagttatgta
tgtggtactgtttcctaaattaagaataagcagaatttgggtatattgga
aatggagaaacagaaattgagtggatattcagagttgtgtttttgtctct
gataagcaataacgttttgatcaataacactgaaaaaatttaagttctaa
aagaaagtttctctctatcaacccctatattgtcaagttactaccaataa
aatcttaagtttaagttttcttttacttcatatttatcattggtgttcaa
agtttatcattttgacatgtgacctctgtgtgaacttgggcaaataaaat
tacttttgttgtctgtgatttcaaagctatgaagcaagtgcacgagtata
ggtttacatgaatttcaaggatacttctacagataatgatgtcaataata
aatacatttacaaagtgataatatgccgtcatatttttaaccttgttcat
tctcagaaattaattaggtttgttttgttttgtttttcaagacagggttt
ctctgtatggcactggctgtcctggaactcactttgtagaccaggctggc
ctcgaactcagaaatccgcctgcctgggataaaggcatgcaccaccacca
cctggcaagtaattagttttatgttttgtatattgtatcagtagaattct
caagctccaggaaatttatcaggcaacatgtagtccggtattatataata
tttcctcaaatgtgaagtttagtgaaggctttcttttctgtaactctttt
tatccgctaactgaaaacccccatcatgcctccaaaaaatacatatgccc
aagtcaggtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17928771_17929858
seq2: B6Ng01-053A22.b_48_1129

seq1  GAATTCCAATGGATGAATAGCTCCTACCTGAAACAGTGTGAATGGCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGGATGAATAGCTCCTACCTGAAACAGTGTGAATGGCTTTC  50

seq1  AAACTTTCTTTTTTCTTTTTTTTTTTTTCTGAAGAAAAAAGTAAGAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCTTTTTTCTTTTTTTTTTTTTCTGAAGAAAAAAGTAAGAGCCT  100

seq1  AGGCCACTAGGCTAGAAAAATGTTTAAAAAGAAAGGGTGTGGAGAGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACTAGGCTAGAAAAATGTTTAAAAAGAAAGGGTGTGGAGAGATAA  150

seq1  TCAGTCAGCTAACTTCTTTCACCTCATAAGAGAAAATGATGAAATGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGCTAACTTCTTTCACCTCATAAGAGAAAATGATGAAATGTATT  200

seq1  AAACTCAATCCCCAGAACCATATTACCCATTCTCAGAAAGTCAATATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAATCCCCAGAACCATATTACCCATTCTCAGAAAGTCAATATAAC  250

seq1  AAAGCAAATGGATTTTCTAGTCTGTGTGTGTGTGCATGTGTAGTTCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAATGGATTTTCTAGTCTGTGTGTGTGTGCATGTGTAGTTCAGTC  300

seq1  TACAGAATAAATTGAAGGAGAAATAAAAGGAGTTATTTTTCTGTCGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATAAATTGAAGGAGAAATAAAAGGAGTTATTTTTCTGTCGCATC  350

seq1  GAGTCATTGATGGTTTGAATTTGGTCCTTAAAGTAGGCAGACTTTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATTGATGGTTTGAATTTGGTCCTTAAAGTAGGCAGACTTTTTTTA  400

seq1  ATCAGAAAAACATGTGCCTAAGTAACCTAGTGATTTTTGTCCTCCGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAAACATGTGCCTAAGTAACCTAGTGATTTTTGTCCTCCGAAAA  450

seq1  GAGTCATCACCTGATTTCCAGCCTAGGTCTTTCTCTATGTGCTTCAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATCACCTGATTTCCAGCCTAGGTCTTTCTCTATGTGCTTCAGTCT  500

seq1  GGATAAACATAGTCAGTATAACTTTCAATCAGTGAGAGTTCCTAACAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAACATAGTCAGTATAACTTTCAATCAGTGAGAGTTCCTAACAAGC  550

seq1  AAAACCACGTGAAGATCTTTGCCCATTGCAGCCCGAGATGTTACAGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACGTGAAGATCTTTGCCCATTGCAGCCCGAGATGTTACAGAGGG  600

seq1  TTTTCTCCTTGTCTGATCTTCCTTCTAAAGAACAACTATGCTTGAACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTTGTCTGATCTTCCTTCTAAAGAACAACTATGCTTGAACTAT  650

seq1  GCAGAAGCGTAGAGGGAGAAGCAGAGAAATGAGAGAAGCCAGCAAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCGTAGAGGGAGAAGCAGAGAAATGAGAGAAGCCAGCAAGCAGA  700

seq1  TGGCTTAATTGTCTAGTTCATTCCATCCATCACTGAGGCATGTGCTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAATTGTCTAGTTCATTCCATCCATCACTGAGGCATGTGCTATTT  750

seq1  TGGCATTCTAGGAAACATTATATCCAGGAACAGCAGGAGTGACTGTTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCTAGGAAACATTATATCCAGGAACAGCAGGAGTGACTGTTAGA  800

seq1  GCCAAGGTCTAGATTTCTATGGTAGTGCCATTGACTGGCAACACTGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTCTAGATTTCTATGGTAGTGCCATTGACTGGCAACACTGAATA  850

seq1  GCAACTGCATAGATGAAACTAAACAGTAGTTGGTACCACAGATAATTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGCATAGATGAAACTAAACAGTAGTTGGTACCACAGATAATTGTA  900

seq1  TTAAATGCCTGCCATCATAAGCCTAATGGTATTAACTTTTAGGTAGCTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCCTGCCATCATAAGCCTAATGGTATTAACTTTTAGGTAGCTAC  950

seq1  CAGCATAATCCTTTAC-TGTCTTTACAATCATTTGAAATTATGGAAATAT  999
      ||||||||| |||||| ||||||||| ||||||||||||||||| |||||
seq2  CAGCATAAT-CTTTACTTGTCTTTAC-ATCATTTGAAATTATGGGAATAT  998

seq1  CTTGTAAAGTTGTTGAACATTATTAAACCATTAAGTATTTTAATATGATT  1049
      ||||| |||| ||||||||||||||||||||  || | ||||||||||| 
seq2  CTTGT-AAGTGGTTGAACATTATTAAACCAT--AGGA-TTTAATATGATA  1044

seq1  AATTCTACTGGCGTTCTGTGTGTGTTTGCATGCATACAC  1088
      ||| |||||||   |||||||||| ||||||||||||||
seq2  AATCCTACTGGGCGTCTGTGTGTG-TTGCATGCATACAC  1082

seq1: chr18_18088807_18089918
seq2: B6Ng01-053A22.g_66_1176 (reverse)

seq1  GTACATGACATGGG-ATATGTATTTATTTGGAGGCATGATGGGTGATTTC  49
      |||| |||| |||| |||||||||| ||||||||||||||||| | ||||
seq2  GTACCTGACTTGGGCATATGTATTT-TTTGGAGGCATGATGGGGGTTTTC  49

seq1  AG-TAGCAGAATAAAAGAGTTACAGACAAAGAAAGCCTT-ACTACAACTT  97
      || |||| ||  |||||||||||||| |||||||||||| |||| |||||
seq2  AGTTAGCGGATAAAAAGAGTTACAGA-AAAGAAAGCCTTCACTA-AACTT  97

seq1  CACATTTTGAGAAATA-TATATAATACCGGACTACATGTTGCCTGATAAA  146
      |||||||   |||||| |||||||||||||||||||||||||||||||||
seq2  CACATTTGAGGAAATATTATATAATACCGGACTACATGTTGCCTGATAAA  147

seq1  TTTCCTGGAGCTTGAGAATTCTACTGATACAATTATACAAAACATAAAAC  196
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCCTGGAGCTTGAGAATTCTACTGATACAA-TATACAAAACATAAAAC  196

seq1  TAATTACTTGCCAGGTGGTGGTGGTGCATGCCTTTAATCCCAGGCAGGCG  246
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAATTACTTGCCAGGTGGTGGTGGTGCATGCCTTT-ATCCCAGGCAGGCG  245

seq1  GATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  295

seq1  CCAGTGCCATACAGAGAAACCCTGTCTTGAAAAACAAAACAAAACAAACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCATACAGAGAAACCCTGTCTTGAAAAACAAAACAAAACAAACC  345

seq1  TAATTAATTTCTGAGAATGAACAAGGTTAAAAATATGACGGCATATTATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTTCTGAGAATGAACAAGGTTAAAAATATGACGGCATATTATC  395

seq1  ACTTTGTAAATGTATTTATTATTGACATCATTATCTGTAGAAGTATCCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAAATGTATTTATTATTGACATCATTATCTGTAGAAGTATCCTT  445

seq1  GAAATTCATGTAAACCTATACTCGTGCACTTGCTTCATAGCTTTGAAATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATGTAAACCTATACTCGTGCACTTGCTTCATAGCTTTGAAATC  495

seq1  ACAGACAACAAAAGTAATTTTATTTGCCCAAGTTCACACAGAGGTCACAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAACAAAAGTAATTTTATTTGCCCAAGTTCACACAGAGGTCACAT  545

seq1  GTCAAAATGATAAACTTTGAACACCAATGATAAATATGAAGTAAAAGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATGATAAACTTTGAACACCAATGATAAATATGAAGTAAAAGAAA  595

seq1  ACTTAAACTTAAGATTTTATTGGTAGTAACTTGACAATATAGGGGTTGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACTTAAGATTTTATTGGTAGTAACTTGACAATATAGGGGTTGAT  645

seq1  AGAGAGAAACTTTCTTTTAGAACTTAAATTTTTTCAGTGTTATTGATCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAACTTTCTTTTAGAACTTAAATTTTTTCAGTGTTATTGATCAA  695

seq1  AACGTTATTGCTTATCAGAGACAAAAACACAACTCTGAATATCCACTCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTATTGCTTATCAGAGACAAAAACACAACTCTGAATATCCACTCAA  745

seq1  TTTCTGTTTCTCCATTTCCAATATACCCAAATTCTGCTTATTCTTAATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTCTCCATTTCCAATATACCCAAATTCTGCTTATTCTTAATTT  795

seq1  AGGAAACAGTACCACATACATAACTTGTATTGGATAGGGCTCATTCATAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAGTACCACATACATAACTTGTATTGGATAGGGCTCATTCATAA  845

seq1  TATAACTGTTTTCTGATAAATGTGATGGAGACAAGAAAGGAATTAAATAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGTTTTCTGATAAATGTGATGGAGACAAGAAAGGAATTAAATAA  895

seq1  ACTCATTTTCCTTTTAGAATTTGAAGCAGCACTGATTATAGCCATTCTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTTCCTTTTAGAATTTGAAGCAGCACTGATTATAGCCATTCTAC  945

seq1  ACTAGGGTTTTAGTGACTGTTTCCTGAGTGACTTTTGCTGAGTAGAGTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGTTTTAGTGACTGTTTCCTGAGTGACTTTTGCTGAGTAGAGTTA  995

seq1  CATTGAAGGTGACCATGGCAGAACAGACTATTCTATGATACTTGTCATTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGGTGACCATGGCAGAACAGACTATTCTATGATACTTGTCATTA  1045

seq1  TGATCAATTTTCATATGTTCTTCTTTTCTTCATATGAGACCTGACATTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAATTTTCATATGTTCTTCTTTTCTTCATATGAGACCTGACATTCT  1095

seq1  GTAAATCTATGAATTC  1112
      ||||||||||||||||
seq2  GTAAATCTATGAATTC  1111