BAC Information

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BAC

Clone NameB6Ng01-053H16
Chromosome18 (Build37)
Map Location 68,586,094 - 68,706,483
singlet/doubletdoublet
Overlap geneMc2r
Upstream geneAfg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053H16.bB6Ng01-053H16.g
ACCDH876515DH876516
length756677
definitionDH876515|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H16, 5' end.DH876516|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,705,729 - 68,706,483)(68,586,094 - 68,586,769)
sequence
gaattctctgtattgtcccttatatgtccttataagtatgtgttttcaag
gatttgaaaatgaaggtttaggatctggaggggtggctcagcagttaaga
gctcccactgaggaaaggagtttggctcccagcatcctcttcagctccca
gccacctctaactctagcctcagggattccaatgcccactccaggcttcc
agggatgtttcacccatgtgcacaaacacacaggcatccacataattcaa
ataaaaataaaacctcttaaacaaataagagtttagttaaaacgtgtctc
tagtaacacgaagaacttctagtctctgttgtaagctgaatcacgtctcc
ttgaaattcatcacacagtgaagtgccaactctcccgtggctgtatttgg
agataaggtctttaagagttaattgaagttaaactagaccagaaaaggta
gagtcatccaatagaatcatggccttatagccaaaatgaaagatcttagc
agaaaccacttctgcccaatttttatctggaactttcagtttcaatacta
tgaggacacagatttctgggttgtcaacagtctctggtattttgtgatga
tgatccaagctaagtcaaacacaagagaaaatacagatcttttaaagtga
taaattttgaaacaagccatgaaccaaaccagtttctttttcaagcattc
attcatgacctaccatggagtgtgtgtgtgcttgtgtgtatgtgtgtgtg
tgtgtg
gaattctgtgggggaaatcccctatggcaggctttcaagggaacctctct
ctttctgtacggtcagagaaattggaaattcaaacatttgattgtactgg
gcagagcacagcagcttagtgagcagaaagagttgggaaatgagactgga
gagatgagagtgtctggccagcagagcttttcctttctactgctaaatgg
acaaggaacccaggtacttctggggtcttgagagcttcttctgggaggag
ggccactgaagtacccattctatcccctttctgccttggctgaccttaac
cttggccagctagaacctccccacccctgccgatcatattttcctgaccg
gaatcgagcacttctccctgctgggcttaaaggcatcataaacctttatc
ggctcgactctaccacttgcatagaacaatattgtttacatgtcagtcgt
gtgctgtgtttttcaccccatgaaacgttggattccatgccatccacctg
ttgctagtactttgtgccgaacacttgttttaaaaccaaccttccaaaac
tgaacagcctggctccttgaaaccagaacaaaagatgtcactgcaaccgg
tcagcattctgcctctccctcaaactgcccagttcttaggtccccctggc
ttccggggatggtggtgggtggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68705729_68706483
seq2: B6Ng01-053H16.b_43_798 (reverse)

seq1  CACACACACACACACATACACACAAGCACACACACACTCCATGGTAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACATACACACAAGCACACACACACTCCATGGTAGGTC  50

seq1  ATGAATGAATGCTTG-AAAAGAAACTGGTTTGGTTCATGGCTTGTTTCAA  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGAATGAATGCTTGAAAAAGAAACTGGTTTGGTTCATGGCTTGTTTCAA  100

seq1  AATTTATCACTTTAAAAGATCTGTATTTTCTCTTGTGTTTGACTTAGCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCACTTTAAAAGATCTGTATTTTCTCTTGTGTTTGACTTAGCTT  150

seq1  GGATCATCATCACAAAATACCAGAGACTGTTGACAACCCAGAAATCTGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATCATCACAAAATACCAGAGACTGTTGACAACCCAGAAATCTGTG  200

seq1  TCCTCATAGTATTGAAACTGAAAGTTCCAGATAAAAATTGGGCAGAAGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATAGTATTGAAACTGAAAGTTCCAGATAAAAATTGGGCAGAAGTG  250

seq1  GTTTCTGCTAAGATCTTTCATTTTGGCTATAAGGCCATGATTCTATTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCTAAGATCTTTCATTTTGGCTATAAGGCCATGATTCTATTGGA  300

seq1  TGACTCTACCTTTTCTGGTCTAGTTTAACTTCAATTAACTCTTAAAGACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTACCTTTTCTGGTCTAGTTTAACTTCAATTAACTCTTAAAGACC  350

seq1  TTATCTCCAAATACAGCCACGGGAGAGTTGGCACTTCACTGTGTGATGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCCAAATACAGCCACGGGAGAGTTGGCACTTCACTGTGTGATGAA  400

seq1  TTTCAAGGAGACGTGATTCAGCTTACAACAGAGACTAGAAGTTCTTCGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGAGACGTGATTCAGCTTACAACAGAGACTAGAAGTTCTTCGTG  450

seq1  TTACTAGAGACACGTTTTAACTAAACTCTTATTTGTTTAAGAGGTTTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAGACACGTTTTAACTAAACTCTTATTTGTTTAAGAGGTTTTAT  500

seq1  TTTTATTTGAATTATGTGGATGCCTGTGTGTTTGTGCACATGGGTGAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGAATTATGTGGATGCCTGTGTGTTTGTGCACATGGGTGAAAC  550

seq1  ATCCCTGGAAGCCTGGAGTGGGCATTGGAATCCCTGAGGCTAGAGTTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGAAGCCTGGAGTGGGCATTGGAATCCCTGAGGCTAGAGTTAGA  600

seq1  GGTGGCTGGGAGCTGAAGAGGATGCTGGGAGCCAAACTCCTTTCCTCAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTGGGAGCTGAAGAGGATGCTGGGAGCCAAACTCCTTTCCTCAGT  650

seq1  GGGAGCTCTTAACTGCTGAGCCACCCCTCCAGATCCTAAACCTTCATTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTCTTAACTGCTGAGCCACCCCTCCAGATCCTAAACCTTCATTTT  700

seq1  CAAATCCTTGAAAACACATACTTATAAGGACATATAAGGGACAATACAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTTGAAAACACATACTTATAAGGACATATAAGGGACAATACAGA  750

seq1  GAATTC  755
      ||||||
seq2  GAATTC  756

seq1: chr18_68586094_68586769
seq2: B6Ng01-053H16.g_69_745

seq1  GAATTCTGTGGGGGAAATCCCCTATGGCAGGCTTTCAAGGGAACCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGGGGAAATCCCCTATGGCAGGCTTTCAAGGGAACCTCTCT  50

seq1  CTTTCTGTACGGTCAGAGAAATTGGAAATTCAAACATTTGATTGTACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTACGGTCAGAGAAATTGGAAATTCAAACATTTGATTGTACTGG  100

seq1  GCAGAGCACAGCAGCTTAGTGAGCAGAAAGAGTTGGGAAATGAGACTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCACAGCAGCTTAGTGAGCAGAAAGAGTTGGGAAATGAGACTGGA  150

seq1  GAGATGAGAGTGTCTGGCCAGCAGAGCTTTTCCTTTCTACTGCTAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGAGTGTCTGGCCAGCAGAGCTTTTCCTTTCTACTGCTAAATGG  200

seq1  ACAAGGAACCCAGGTACTTCTGGGGTCTTGAGAGCTTCTTCTGGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAACCCAGGTACTTCTGGGGTCTTGAGAGCTTCTTCTGGGAGGAG  250

seq1  GGCCACTGAAGTACCCATTCTATCCCCTTTCTGCCTTGGCTGACCTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGAAGTACCCATTCTATCCCCTTTCTGCCTTGGCTGACCTTAAC  300

seq1  CTTGGCCAGCTAGAACCTCCCCACCCCTGCCGATCATATTTTCCTGACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCAGCTAGAACCTCCCCACCCCTGCCGATCATATTTTCCTGACCG  350

seq1  GAATCGAGCACTTCTCCCTGCTGGGCTTAAAGGCATCATAAACCTTTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGAGCACTTCTCCCTGCTGGGCTTAAAGGCATCATAAACCTTTATC  400

seq1  GGCTCGACTCTACCACTTGCATAGAACAATATTGTTTACATGTCAGTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGACTCTACCACTTGCATAGAACAATATTGTTTACATGTCAGTCGT  450

seq1  GTGCTGTGTTTTTCACCCCATGAAACGTTGGATTCCATGCCATCCACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGTTTTTCACCCCATGAAACGTTGGATTCCATGCCATCCACCTG  500

seq1  TTGCTAGTACTTTGTGCCGAACACTTGTTTTAAAACCAACCTTCCAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGTACTTTGTGCCGAACACTTGTTTTAAAACCAACCTTCCAAAAC  550

seq1  TGAACAGCCTGGCTCCTTGAAACCAGAACAAAAGATGTCACTGCAACCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCCTGGCTCCTTGAAACCAGAACAAAAGATGTCACTGCAACCGG  600

seq1  TCAGCATTCTGCCTCTCCCTCAAACTGCCCAGTTCTTAGGTCCCCCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTCTGCCTCTCCCTCAAACTGCCCAGTTCTTAGGTCCCCCTGGC  650

seq1  TTCCGGGGATGGTGGT-GGTGGGGTGG  676
      |||||||||||||||| ||||||||||
seq2  TTCCGGGGATGGTGGTGGGTGGGGTGG  677