BAC Information

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BAC

Clone NameB6Ng01-054H02
Chromosome18 (Build37)
Map Location 39,317,171 - 39,469,269
singlet/doubletdoublet
Overlap geneArhgap26
Upstream genePcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253
Downstream geneNr3c1, Pabpc2, LOC100041939, Yipf5, Kctd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054H02.bB6Ng01-054H02.g
ACCDH877185DH877186
length1,063900
definitionDH877185|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H02, 5' end.DH877186|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,317,171 - 39,318,026)(39,468,373 - 39,469,269)
sequence
gaattccagaacattctttacctagatagcctaaatattaatgttttata
caatcttataatcatagttatataccaaggaaattaatattaacacaata
ttatatatttcaaaaatctttgcttacttattaattcatgtctttacctt
ctagactgctgttcagtctaggataacacattgattttagttatcatatc
acttcaatgttatttgaccattattgtgtgactttccttggggacatgtg
aatgaacacctgttcatgacagatagagcatacactactgatcaaagaaa
aaaatttaacccaagtctatcttactgatcctgttactttattgggtttg
cttacagaagtgtggttgagggctacctagtttacatttggtcactgtga
taaacgtttggttgcacgtccaaaaagcaacttggggaggaaagggtttg
tgttggcaacagcttgtgttgagcaaagccaaggcagggactcaaggcag
agactatggaggagtgctgtttactggcttgcttcctttggcctgctaag
atactcttcttaaatggcccagacccccgggaagggtgccacctacagtg
ggctggtcccttatatatcaattggcaattaagaaaacaccatcagacat
gctcataggccaatctgattaaggcaattagtcaattgcattttcctctt
cccaattgactctgacaaacactctccagcacaaaggtgttacttaaggt
cttggtaactcagtgagaagtgcatcactaaagcgcatgctctcatggtt
ctgcagctagccttgctgaagaagtgttttcctctccccagaaagggttt
cctgcttgcacagtgacaatggtgaggggctttaaaactttctgaacttc
ctgagtctcagaaattccattagctttccagtcttatgagctcttctcta
gctccaaccccagaaggtgtgtgtcagttctgaggaaatagcagcgcagt
aatgctaaagcggctagccgacatctttggagggacatttcactagcgat
atgcacaagttga
gaattctgctcttctggtttaccctaagtagctttacagaggtctgagca
caaaataggctcaacaagatttgttgatacttgcagacgagctagactct
ggtgctagattatcaactgccctctggtcctcgggagaaacctggctact
gcaggaagctaggtgaggagttgcccaagactgacacatagcagccatgt
cctagcacgggtggactgctggcaacgctgacttggatgttcaaagtagc
tttatgctcacaccaacaagagggcctccgtgtcctgggatactagaggt
gccatctgagtaacagatcatgagcgatacacatgtttctttcattatga
tttctacatggtcatgatgaccaacccgcatgttatgaaaaaacgggggt
ggggagaggatgagaaaactaaaaagagcaggtagtttcctggtgatgtg
atccttacattatacctaattaataggcagagggatggtaatcttccgcc
cccactctggccacattttgtttccatctgtatcacatgtctctaaacag
ctcagaaggaacaaggatggagaactgaagggggttatgacccagcccaa
gcagcacagcacagagcgccgacagacatctgagaaacaatttactcaag
gaaagcagtgacttccatttgtcagaactacttaactgccacctgtggtc
cacccaggccagttctaggctgagaaagctgtgagggcaggaatcaaagg
atacgctttgggcttagcaatggccaatgacctgctgcggagtttctagg
gattcttggcaccagccttcacatagggatgagcaagcctggaccctggt
gccagggtccactgtatctgtcttcctaaccttcagataataagggatga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_39317171_39318026
seq2: B6Ng01-054H02.b_256_1100

seq1  CATTATTGTGTGACTTTCCTTGGGGACATGTGAATGAACACCTGTTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGTGTGACTTTCCTTGGGGACATGTGAATGAACACCTGTTCATG  50

seq1  ACAGATAGAGCATACACTACTGATCAAAGAAAAAAATTTAACCCAAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGAGCATACACTACTGATCAAAGAAAAAAATTTAACCCAAGTCT  100

seq1  ATCTTACTGATCCTGTTACTTTATTGGGTTTGCTTACAGAAGTGTGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTGATCCTGTTACTTTATTGGGTTTGCTTACAGAAGTGTGGTTG  150

seq1  AGGGCTACCTAGTTTACATTTGGTCACTGTGATAAACGTTTGGTTGCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACCTAGTTTACATTTGGTCACTGTGATAAACGTTTGGTTGCACG  200

seq1  TCCAAAAAGCAACTTGGGGAGGAAAGGGTTTGTGTTGGCAACAGCTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAGCAACTTGGGGAGGAAAGGGTTTGTGTTGGCAACAGCTTGTG  250

seq1  TTGAGCAAAGCCAAGGCAGGGACTCAAGGCAGAGACTATGGAGGAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAAAGCCAAGGCAGGGACTCAAGGCAGAGACTATGGAGGAGTGCT  300

seq1  GTTTACTGGCTTGCTTCCTTTGGCCTGCTAAGATACTCTTCTTAAATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGGCTTGCTTCCTTTGGCCTGCTAAGATACTCTTCTTAAATGGC  350

seq1  CCAGACCCCCGGGAAGGGTGCCACCTACAGTGGGCTGGTCCCTTATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCCCGGGAAGGGTGCCACCTACAGTGGGCTGGTCCCTTATATAT  400

seq1  CAATTGGCAATTAAGAAAACACCATCAGACATGCTCATAGGCCAATCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGCAATTAAGAAAACACCATCAGACATGCTCATAGGCCAATCTGA  450

seq1  TTAAGGCAATTAGTCAATTGCATTTTCCTCTTCCCAATTGACTCTGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCAATTAGTCAATTGCATTTTCCTCTTCCCAATTGACTCTGACAA  500

seq1  ACACTCTCCAGCACAAAGGTGTTACTTAAGGTCTTGGTAACTCAGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCCAGCACAAAGGTGTTACTTAAGGTCTTGGTAACTCAGTGAGA  550

seq1  AGTGCATCACTAAAGCGCATGCTCTCATGGTTCTGCAGCTAGCCTTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATCACTAAAGCGCATGCTCTCATGGTTCTGCAGCTAGCCTTGCTG  600

seq1  AAGAAGTG-TTTCCTCTCCCCAGAAAGGGTTTCCTGCTTGCACAGTGACA  649
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGTTTTCCTCTCCCCAGAAAGGGTTTCCTGCTTGCACAGTGACA  650

seq1  ATGGTGAGGGGCTTTAAAAACTTTCTGAACTTCCTGAGTCTCAGAAATTC  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGGTGAGGGGCTTT-AAAACTTTCTGAACTTCCTGAGTCTCAGAAATTC  699

seq1  CATTAGCTTTCCAAGTCTTATGAGCTCTTCTCTTAGCCCCAACCCCCAGA  749
      |||||||||||| ||||||||||||||||||| |||| |||| |||||||
seq2  CATTAGCTTTCC-AGTCTTATGAGCTCTTCTC-TAGCTCCAA-CCCCAGA  746

seq1  AGGGTGTGTGTCAGTTCTGAGGAAATAGCAGCGCAGTAATGCTTAGAGCG  799
      | |||||||||||||||||||||||||||||||||||||||| || ||||
seq2  A-GGTGTGTGTCAGTTCTGAGGAAATAGCAGCGCAGTAATGC-TAAAGCG  794

seq1  GCTAGCCGACCAGCCTTTGGAAGGGACATTTCCACTAGCCGATATGCACA  849
      ||||||||||    |||||| |||||||||| |||||| |||||||||||
seq2  GCTAGCCGAC--ATCTTTGG-AGGGACATTT-CACTAG-CGATATGCACA  839

seq1  GAGTTGA  856
       ||||||
seq2  -AGTTGA  845

seq1: chr18_39468373_39469269
seq2: B6Ng01-054H02.g_66_965 (reverse)

seq1  TCATCCCTATTGATCTGGAGGTTAGGAAGGCAGATACAGTGGA-CCTGGC  49
      ||||||||  | ||||| ||||||||||| ||||||||||||| ||||||
seq2  TCATCCCTTATTATCTGAAGGTTAGGAAGACAGATACAGTGGACCCTGGC  50

seq1  ACCAGGGTACCAGGCTTGCTCATCCCTATGTGAAGGCT-GTGCC-AGAAT  97
      |||||||| ||||||||||||||||||||||||||||| ||||| |||||
seq2  ACCAGGGT-CCAGGCTTGCTCATCCCTATGTGAAGGCTGGTGCCAAGAAT  99

seq1  CCCTAGAAACTCCGCAGCAGGTCATTGGCCATTTGCTAAGCCCAAAGCGT  147
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCCTAGAAACTCCGCAGCAGGTCATTGGCCA-TTGCTAAGCCCAAAGCGT  148

seq1  ATCC-TTGATTCCTGCCCTCACAGC-TTCTCAGCCTAGAACTGGCCTGGG  195
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATCCTTTGATTCCTGCCCTCACAGCTTTCTCAGCCTAGAACTGGCCTGGG  198

seq1  TGGACCACAGGTGGCAGTTAAGTAGTTCTGACAAATGGAAGTCACTGCTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCACAGGTGGCAGTTAAGTAGTTCTGACAAATGGAAGTCACTGCTT  248

seq1  TCCTTGAGTAAATTGTTTCTCAGATGTCTGTCGGCGCTCTGTGCTGTGCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGTAAATTGTTTCTCAGATGTCTGTCGGCGCTCTGTGCTGTGCT  298

seq1  GCTTGGGCTGGGTCATAACCCCCTTCAGTTCTCCATCCTTGTTCCTTCTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCTGGGTCATAACCCCCTTCAGTTCTCCATCCTTGTTCCTTCTG  348

seq1  AGCTGTTTAGAGACATGTGATACAGATGGAAACAAAATGTGGCCAGAGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTAGAGACATGTGATACAGATGGAAACAAAATGTGGCCAGAGTG  398

seq1  GGGGCGGAAGATTACCATCCCTCTGCCTATTAATTAGGTATAATGTAAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGAAGATTACCATCCCTCTGCCTATTAATTAGGTATAATGTAAGG  448

seq1  ATCACATCACCAGGAAACTACCTGCTCTTTTTAGTTTTCTCATCCTCTCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATCACCAGGAAACTACCTGCTCTTTTTAGTTTTCTCATCCTCTCC  498

seq1  CCACCCCCGTTTTTTCATAACATGCGGGTTGGTCATCATGACCATGTAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCGTTTTTTCATAACATGCGGGTTGGTCATCATGACCATGTAGA  548

seq1  AATCATAATGAAAGAAACATGTGTATCGCTCATGATCTGTTACTCAGATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAATGAAAGAAACATGTGTATCGCTCATGATCTGTTACTCAGATG  598

seq1  GCACCTCTAGTATCCCAGGACACGGAGGCCCTCTTGTTGGTGTGAGCATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCTAGTATCCCAGGACACGGAGGCCCTCTTGTTGGTGTGAGCATA  648

seq1  AAGCTACTTTGAACATCCAAGTCAGCGTTGCCAGCAGTCCACCCGTGCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACTTTGAACATCCAAGTCAGCGTTGCCAGCAGTCCACCCGTGCTA  698

seq1  GGACATGGCTGCTATGTGTCAGTCTTGGGCAACTCCTCACCTAGCTTCCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGGCTGCTATGTGTCAGTCTTGGGCAACTCCTCACCTAGCTTCCT  748

seq1  GCAGTAGCCAGGTTTCTCCCGAGGACCAGAGGGCAGTTGATAATCTAGCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGCCAGGTTTCTCCCGAGGACCAGAGGGCAGTTGATAATCTAGCA  798

seq1  CCAGAGTCTAGCTCGTCTGCAAGTATCAACAAATCTTGTTGAGCCTATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCTAGCTCGTCTGCAAGTATCAACAAATCTTGTTGAGCCTATTT  848

seq1  TGTGCTCAGACCTCTGTAAAGCTACTTAGGGTAAACCAGAAGAGCAGAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAGACCTCTGTAAAGCTACTTAGGGTAAACCAGAAGAGCAGAAT  898

seq1  TC  897
      ||
seq2  TC  900