BAC Information

Click to search

BAC

Clone NameB6Ng01-054N10
Chromosome18 (Build37)
Map Location 51,444,135 - 51,573,301
singlet/doubletdoublet
Overlap genePrr16
Upstream geneHdhd1a, LOC100042373, LOC100042385
Downstream geneEG240289, Ftmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054N10.bB6Ng01-054N10.g
ACCDH877474DH877475
length1,1431,108
definitionDH877474|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N10, 5' end.DH877475|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,444,135 - 51,445,280)(51,572,256 - 51,573,301)
sequence
gaattctttcaaagttctcaattctcagcaccctaatgaagtctcagaaa
tatttgtaactgcagttccagggggtattctgatgctctcttgtggaagt
ctgtacacactgcacacatagtgcacaaataatacaagcaaacacacaca
cacacacacacacacacacacacacacagggagatcaaactctggataat
tctgctgcggagaattaccaacagatatttgcagaactatggacagaggt
tgaaagtacacatgtccatctgaatcttccatacttgggtgcagagacct
agggtgagagagacagaggtgttaagcaatggtcaggaattggtggctag
atttagtccttgttcagtgacacatacaaattctatgctcaaaacttgtc
ttacatgatttttttctctttaaaatcaagctatacttttttcagccagg
atataaataatggtggtattttaaactggtgtattagctgacagtggtcc
ttacttagtctttacatatatattgtattttattctcagcacaagcttta
aaagtgttaagggcaggcatttctgaaatttctgcctttccttctgtggt
tacagtgattatatcctgcctccctccccttcatgtctgtaattgaattt
cagattgggtctatgctccattctgctgctggcatgtatttgttagtttg
gaaatcgtgacatttttagatctcagtcttgttctttgactcctcaatcc
cttttctgctttcctttcttcaggccttttatatggtattaatatttctc
tagcacaaaccccctcaggaacttttttttttttttgccttgtctttcca
actgaactctttggggcaccctgggcactcttttcttcattctttttctt
tccagttgctacagttgtgggggatccagtcatcttttccatttcttttc
tttctttttttttttattgtagttgaataactctccgtgaacttgcagga
ctacaggagtgcttttacttaacacattcttgtcttctttaaaactgtct
tcaagagaacagcatgaaataacttgctttccatattccctcaattctat
agctttaaagcctgttggggaagggtattgtggtgggttgtcg
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatactggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctta
gaaaattggacatagtactaccagaggatcccgcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttagttataatagccagaagctgggaagaacccagat
gtccctcaacagaagaatggatacagaaaatgtggtacatttacacaatg
gagtactactaagctattaaaaaaagaatgaatttatgaaattcctagac
aaatggttggacctggagggcatcatcctgagtgagatgacccaatcaca
aaaggactcacatgataagatgggctattattaaaggatatatttctgtt
gtcctaagttctggagttaaatatctacactgctggcttggaggggttag
gtactctgctgtcatgttcaactcattaatatcagtcttaagcatttgtc
tcattgagaaaatccaaaacactttaatgcctaatgtttcaatttattta
tgtcatagaccttgattattataatttttaggaaatacagtttaaaattt
ttttactctacacatatttggatgtttacttcaaatataaaggcatgtaa
tgatggctgtttgcatggtgacatgtaaaataattttgatacagcttgaa
ataatgaaaaataattacatgcatcaaacctattgtaaacaaaactgagc
aaaggcacccgtgttctttgacccattcttaaactcacagagatcgctac
attcttttcagaacgcttttgtctaaaaatacagtcaggatttattcacc
tttcagaataaattggttcaagttttagtgcttcaagctttctctatgct
tgcagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51444135_51445280
seq2: B6Ng01-054N10.b_45_1187

seq1  GAATTCTTTCAAAGTTCTCAATTCTCAGCACCCTAATGAAGTCTCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAAGTTCTCAATTCTCAGCACCCTAATGAAGTCTCAGAAA  50

seq1  TATTTGTAACTGCAGTTCCAGGGGGTATTCTGATGCTCTCTTGTGGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAACTGCAGTTCCAGGGGGTATTCTGATGCTCTCTTGTGGAAGT  100

seq1  CTGTACACACTGCACACATAGTGCACAAATAATACAAGCAAACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACACTGCACACATAGTGCACAAATAATACAAGCAAACACACACA  150

seq1  CACACACACACACACACACACACACACAGGGAGATCAAACTCTGGATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAGGGAGATCAAACTCTGGATAAT  200

seq1  TCTGCTGCGGAGAATTACCAACAGATATTTGCAGAACTATGGACAGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCGGAGAATTACCAACAGATATTTGCAGAACTATGGACAGAGGT  250

seq1  TGAAAGTACACATGTCCATCTGAATCTTCCATACTTGGGTGCAGAGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTACACATGTCCATCTGAATCTTCCATACTTGGGTGCAGAGACCT  300

seq1  AGGGTGAGAGAGACAGAGGTGTTAAGCAATGGTCAGGAATTGGTGGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGAGAGACAGAGGTGTTAAGCAATGGTCAGGAATTGGTGGCTAG  350

seq1  ATTTAGTCCTTGTTCAGTGACACATACAAATTCTATGCTCAAAACTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCCTTGTTCAGTGACACATACAAATTCTATGCTCAAAACTTGTC  400

seq1  TTACATGATTTTTTTCTCTTTAAAATCAAGCTATACTTTTTTCAGCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGATTTTTTTCTCTTTAAAATCAAGCTATACTTTTTTCAGCCAGG  450

seq1  ATATAAATAATGGTGGTATTTTAAACTGGTGTATTAGCTGACAGTGGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAATGGTGGTATTTTAAACTGGTGTATTAGCTGACAGTGGTCC  500

seq1  TTACTTAGTCTTTACATATATATTGTATTTTATTCTCAGCACAAGCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGTCTTTACATATATATTGTATTTTATTCTCAGCACAAGCTTTA  550

seq1  AAAGTGTTAAGGGCAGGCATTTCTGAAATTTCTGCCTTTCCTTCTGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTAAGGGCAGGCATTTCTGAAATTTCTGCCTTTCCTTCTGTGGT  600

seq1  TACAGTGATTATATCCTGCCTCCCTCCCCTTCATGTCTGTAATTGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGATTATATCCTGCCTCCCTCCCCTTCATGTCTGTAATTGAATTT  650

seq1  CAGATTGGGTCTATGCTCCATTCTGCTGCTGGCATGTATTTGTTAGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGGGTCTATGCTCCATTCTGCTGCTGGCATGTATTTGTTAGTTTG  700

seq1  GAAATCGTGACATTTTTAGATCTCAGTCTTGTTCTTTGACTCCTCAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCGTGACATTTTTAGATCTCAGTCTTGTTCTTTGACTCCTCAATCC  750

seq1  CTTTTCTGCTTTCCTTTCTTCAGGCCTTTTATATGGTATTAATATTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGCTTTCCTTTCTTCAGGCCTTTTATATGGTATTAATATTTCTC  800

seq1  TAGCACAAACCCCCTCAGGAAC-TTTTTTTTTTTTTGCCTTGTCTTCCAA  849
      |||||||||||||||||||||| ||||||||||||||||||||||| | |
seq2  TAGCACAAACCCCCTCAGGAACTTTTTTTTTTTTTTGCCTTGTCTTTCCA  850

seq1  ACTGAACTCTTTGGGGCACCCTGGGCACTCTTTTCTTCATTCCTTTTCCT  899
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  ACTGAACTCTTTGGGGCACCCTGGGCACTCTTTTCTTCATT-CTTTTTCT  899

seq1  TCCCAGTTGCTACAGTTGT-GGGGATCCAGTCATC-TTTCCATTTCTTTT  947
      | ||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  TTCCAGTTGCTACAGTTGTGGGGGATCCAGTCATCTTTTCCATTTCTTTT  949

seq1  CTTTCTTTTTTTTTTATTTGTTAGTTGAATAACTCTCCCGTGAACTTGCA  997
      |||||||||||||||  ||| ||||||||||||||| |||||||||||||
seq2  CTTTCTTTTTTTTTTTATTG-TAGTTGAATAACTCT-CCGTGAACTTGCA  997

seq1  GGACTACAGGAGTGGCTTTTACTTAGCACATTCCTGTCTTCTGTAAGACT  1047
      ||||||||||||| ||||||||||| ||||||| |||||||| ||| |||
seq2  GGACTACAGGAGT-GCTTTTACTTAACACATTCTTGTCTTCTTTAAAACT  1046

seq1  GTCTTCAAAGAGAAACCAGCATGAAAATAACCTTGCTTTCCATATCCCCC  1097
      |||||| |||||||  ||||||| |||||| |||||||||||||| ||| 
seq2  GTCTTC-AAGAGAA--CAGCATG-AAATAA-CTTGCTTTCCATATTCCCT  1091

seq1  CAATTCTATAGCTTTAAAGCCTGT--GGGGAGGGTA-TGTGGTGGGTTGT  1144
      ||||||||||||||||||||||||  ||| |||||| |||||||||||||
seq2  CAATTCTATAGCTTTAAAGCCTGTTGGGGAAGGGTATTGTGGTGGGTTGT  1141

seq1  GG  1146
       |
seq2  CG  1143

seq1: chr18_51572256_51573301
seq2: B6Ng01-054N10.g_133_1173 (reverse)

seq1  AAACTGCAAGCAT-GAGAAAGCTTTGAAGCACTTAAAACTTGAACCAATT  49
      ||||||||||||| |||||||| ||||||||| |||||||||||||||||
seq2  AAACTGCAAGCATAGAGAAAGC-TTGAAGCAC-TAAAACTTGAACCAATT  48

seq1  TCATCTGAAAAGTGAATAAAATCTTGACTGTATTTTTAGACAAAGCCTTT  99
      |  ||||||| |||||| ||||| ||||||||||||||||||||  | ||
seq2  TATTCTGAAAGGTGAAT-AAATCCTGACTGTATTTTTAGACAAAAGCGTT  97

seq1  CTGAAAAGAATGTAGCGATTCTCTGTGAGTTTAAGAATGGGTCAAAGAAC  149
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGAAAAGAATGTAGCGA-TCTCTGTGAGTTTAAGAATGGGTCAAAGAAC  146

seq1  ACGGGTGCCTTTGCTCAGTTTTGTTTACAATAGGTTTTGATGCATGTAAT  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACGGGTGCCTTTGCTCAGTTTTGTTTACAATAGG-TTTGATGCATGTAAT  195

seq1  TATTTTTTCATTATTTCAAGCTGTATCAAAATTATTTTACATGTCACCAT  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTTTTCATTATTTCAAGCTGTATCAAAATTATTTTACATGTCACCAT  244

seq1  GCAAACAGCCATCATTACATGCCTTTATATTTGAAGTAAACATCCAAATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGCCATCATTACATGCCTTTATATTTGAAGTAAACATCCAAATA  294

seq1  TGTGTAGAGTAAAAAAATTTTAAACTGTATTTCCTAAAAATTATAATAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGAGTAAAAAAATTTTAAACTGTATTTCCTAAAAATTATAATAAT  344

seq1  CAAGGTCTATGACATAAATAAATTGAAACATTAGGCATTAAAGTGTTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCTATGACATAAATAAATTGAAACATTAGGCATTAAAGTGTTTTG  394

seq1  GATTTTCTCAATGAGACAAATGCTTAAGACTGATATTAATGAGTTGAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTCAATGAGACAAATGCTTAAGACTGATATTAATGAGTTGAACA  444

seq1  TGACAGCAGAGTACCTAACCCCTCCAAGCCAGCAGTGTAGATATTTAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAGAGTACCTAACCCCTCCAAGCCAGCAGTGTAGATATTTAACT  494

seq1  CCAGAACTTAGGACAACAGAAATATATCCTTTAATAATAGCCCATCTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTTAGGACAACAGAAATATATCCTTTAATAATAGCCCATCTTAT  544

seq1  CATGTGAGTCCTTTTGTGATTGGGTCATCTCACTCAGGATGATGCCCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGTCCTTTTGTGATTGGGTCATCTCACTCAGGATGATGCCCTCC  594

seq1  AGGTCCAACCATTTGTCTAGGAATTTCATAAATTCATTCTTTTTTTAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAACCATTTGTCTAGGAATTTCATAAATTCATTCTTTTTTTAATA  644

seq1  GCTTAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTC  694

seq1  TTCTGTTGAGGGACATCTGGGTTCTTCCCAGCTTCTGGCTATTATAACTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGAGGGACATCTGGGTTCTTCCCAGCTTCTGGCTATTATAACTA  744

seq1  AGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCA  794

seq1  TCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGATCCTCTGGTAGTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGATCCTCTGGTAGTAC  844

seq1  TATGTCCAATTTTCTAAGGAACCACCAGACTGATTTCCAGAGTGGTTGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAATTTTCTAAGGAACCACCAGACTGATTTCCAGAGTGGTTGTA  894

seq1  CAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACAT  944

seq1  CCTCGCCAGTATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCCAGTATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGAC  994

seq1  TGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGA  1046
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGA  1041