BAC Information

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BAC

Clone NameB6Ng01-055L02
Chromosome18 (Build37)
Map Location 39,855,384 - 39,994,005
singlet/doubletdoublet
Overlap genePabpc2
Upstream geneLOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26, Nr3c1
Downstream geneLOC100041939, Yipf5, Kctd16, EG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055L02.bB6Ng01-055L02.g
ACCDH878065DH878066
length1,0421,096
definitionDH878065|Mus musculus domesticus DNA, BAC clone: B6Ng01-055L02, 5' end.DH878066|Mus musculus domesticus DNA, BAC clone: B6Ng01-055L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,855,384 - 39,856,420)(39,992,900 - 39,994,005)
sequence
gaattcactattttgactaggttgtttcgggagttagcttccaggaccca
ctgtcacaatttccccagagctagcttcacaagcatgccatcatcgtggc
cttgtgacatggcatcggaacatggatgtttgttccttgtgcttgcgtga
taagtaattctgcaaccgagatagttccataacctttgtttacagtatta
agggaggggactgaccaccagacaggtattttactttagtaagccctggt
acagagttatctctgaaagcacaaagtcctacatttgtaccagcaaaggt
tgccaagcttcaaatgtgagcagaggtgaggaggggtcacaaagggaact
agaggaggtagggaagaggagaggattagaaacctactgttccaattcct
tccatgtctaggaagacatgcagttaatctgaaactagtcctagctgctt
ggctacaatgtcatctcagcacaggtgagtccgtgctagttattttgtct
aatgttctttattacaacaccgtttacatgctaactaaagtaacataaat
gctcatagatgagggtgtttgatgtctctagtaagaatgtatattttaac
tgtgccttgtaagtgttaaacatcttatttaatgtacctaataccaaatt
attttatagaggatgaatctggtccttgggaagtccaatgacaaaattct
gattaaattaaattaatctgaattacttggagttggtagtggtgagcttg
aaggacaagttcagaactcaatccacagacccagaaagctgaagtcatca
aagtcatgatggttagaaaggttagcagcagaggggactggggtgttata
gcaggtttccacacaaggcttgccaatacctgccccttccctgcttctta
gcccatcttcagctgcatccaaggatcttcttcttcttgacagtcacaat
cttcaggagagagatctcattttccggctcagaaataggttctaactggt
ctaagccaacacagaagccaatatcctacctgaataatggac
gaattcttagatactggggactggctcaaagatacacataaaaagacatt
tccatatgtggtagtctaaataacaatgtctatcaaaagcttgtatattt
gagtgctaggtccctagttcgtagaactgtttggaaaggattaggaggtg
tggccttgttggaagagcggtgtcactagggatgggcttttaggtttcta
aggctcagtctccctcttcgctctcattctgaaacatgtagattagatgt
gagttctcagccactgcctcagccatacacttgcctgtctaccgccatgc
tccccaccatgatgatcatggactaactctgtggaaccataagcaagcct
caaatcaaatgttttatttttgtaagagttgccttggtcatgctgcatct
gcccagcagtagctagaccattaaccagacgctgtattttgtttactcta
ctctcaaaggaagggcagtgctacaatgaagccagtgatgagcaagccag
actatcagggtctggatgtttcgttctcttttctaggagactccagaaac
tcaggacacagagaggttgcagaagtacaggcttaggtagaaagtagatc
cgatgaagagcacagggcaaagggtgagcagtctccctatgtaaactcat
gaaaaaccatagtgtagccccagtctccttggagacacatcaacctatcg
ctaacacttaaacagacctcaaaattatttcatggaaaagtttcctgaat
tagttgacttttttaattactatttaaactaaataacatattctttcaag
ccaataatagcttatgggttccccttcggtggcccacagacttgctacag
cctttcctcactggcagatgggctcctggtcactcaaacccgcagtagga
atggtaaatttgaaaatagggctctgagattcagggaaaaggcaaagatt
ctctgtctttcctttaaacttctgactctgcccatgcagcagagttcttc
agtggcccagcctagccttgggacaaatttcacctcattttcttctatga
attttccacgccattgtagcaggtgattcagcaggaacgactgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_39855384_39856420
seq2: B6Ng01-055L02.b_47_1088

seq1  GAATTCACTATTTTGACTAGGTTGTTTCGGGAGTTAGCTTCCAGGACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTTTGACTAGGTTGTTTCGGGAGTTAGCTTCCAGGACCCA  50

seq1  CTGTCACAATTTCCCCAGAGCTAGCTTCACAAGCATGCCATCATCGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAATTTCCCCAGAGCTAGCTTCACAAGCATGCCATCATCGTGGC  100

seq1  CTTGTGACATGGCATCGGAACATGGATGTTTGTTCCTTGTGCTTGCGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACATGGCATCGGAACATGGATGTTTGTTCCTTGTGCTTGCGTGA  150

seq1  TAAGTAATTCTGCAACCGAGATAGTTCCATAACCTTTGTTTACAGTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATTCTGCAACCGAGATAGTTCCATAACCTTTGTTTACAGTATTA  200

seq1  AGGGAGGGGACTGACCACCAGACAGGTATTTTACTTTAGTAAGCCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGGACTGACCACCAGACAGGTATTTTACTTTAGTAAGCCCTGGT  250

seq1  ACAGAGTTATCTCTGAAAGCACAAAGTCCTACATTTGTACCAGCAAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTATCTCTGAAAGCACAAAGTCCTACATTTGTACCAGCAAAGGT  300

seq1  TGCCAAGCTTCAAATGTGAGCAGAGGTGAGGAGGGGTCACAAAGGGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGCTTCAAATGTGAGCAGAGGTGAGGAGGGGTCACAAAGGGAACT  350

seq1  AGAGGAGGTAGGGAAGAGGAGAGGATTAGAAACCTACTGTTCCAATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGTAGGGAAGAGGAGAGGATTAGAAACCTACTGTTCCAATTCCT  400

seq1  TCCATGTCTAGGAAGACATGCAGTTAATCTGAAACTAGTCCTAGCTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCTAGGAAGACATGCAGTTAATCTGAAACTAGTCCTAGCTGCTT  450

seq1  GGCTACAATGTCATCTCAGCACAGGTGAGTCCGTGCTAGTTATTTTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAATGTCATCTCAGCACAGGTGAGTCCGTGCTAGTTATTTTGTCT  500

seq1  AATGTTCTTTATTACAACACCGTTTACATGCTAACTAAAGTAACATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTTTATTACAACACCGTTTACATGCTAACTAAAGTAACATAAAT  550

seq1  GCTCATAGATGAGGGTGTTTGATGTCTCTAGTAAGAATGTATATTTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAGATGAGGGTGTTTGATGTCTCTAGTAAGAATGTATATTTTAAC  600

seq1  TGTGCCTTGTAAGTGTTAAACATCTTATTTAATGTACCTAATACCAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTGTAAGTGTTAAACATCTTATTTAATGTACCTAATACCAAATT  650

seq1  ATTTTATAGAGGATGAATCTGGTCCTTGGGAAGTCCAATGACAAAATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAGAGGATGAATCTGGTCCTTGGGAAGTCCAATGACAAAATTCT  700

seq1  GATTAAATTAAATTAATCTGAATTACTTGGAGTTGGTAGTGGTGAGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATTAAATTAATCTGAATTACTTGGAGTTGGTAGTGGTGAGCTTG  750

seq1  AAGGACAAGTTCAGAACTCAATCCACAGACCCAGAAAGCTGAAGTCATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAGTTCAGAACTCAATCCACAGACCCAGAAAGCTGAAGTCATCA  800

seq1  AAGTCATGATGGTTAGAAAGGTTAGCAGCAGAGGGGACTGGGGTGTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGATGGTTAGAAAGGTTAGCAGCAGAGGGGACTGGGGTGTTATA  850

seq1  GCAGGTTTCCACAC-AGGCTGCCCAATACCTGCCCCTTCCCTGCTTCTTA  899
      |||||||||||||| |||||  ||||||||||||||||||||||||||||
seq2  GCAGGTTTCCACACAAGGCTTGCCAATACCTGCCCCTTCCCTGCTTCTTA  900

seq1  GCCCATC-TCAGCTGCATCC-AGGATTCTCTTCCTCCTGACAGTCACAAT  947
      ||||||| |||||||||||| |||||  ||||| || |||||||||||||
seq2  GCCCATCTTCAGCTGCATCCAAGGATCTTCTTCTTCTTGACAGTCACAAT  950

seq1  CTTCAGGGAGAGAGATCCCA-TTTCCGGCTCAGAAATAGG-TCTAACTGG  995
      ||||| ||||||||||| || ||||||||||||||||||| |||||||||
seq2  CTTCA-GGAGAGAGATCTCATTTTCCGGCTCAGAAATAGGTTCTAACTGG  999

seq1  TCTAAGCCAAACACAGAAGCC-ATATCCTACTTG-ATAATGGAC  1037
      |||||||| |||||||||||| ||||||||| || |||||||||
seq2  TCTAAGCC-AACACAGAAGCCAATATCCTACCTGAATAATGGAC  1042

seq1: chr18_39992900_39994005
seq2: B6Ng01-055L02.g_70_1165 (reverse)

seq1  AGACAGTCGTTCCTGCTGAATCACTTGCTTACAATGCCGTGGGAAAAATT  50
      |||||||||||||||||||||||| ||| ||||||| |||||  ||||||
seq2  AGACAGTCGTTCCTGCTGAATCACCTGC-TACAATGGCGTGG--AAAATT  47

seq1  CATTAGAAGAAAATGATGTTGAAATTTGGTCCCAAGGCTTAGGCTGGGCC  100
      || ||||||||||||| | |||||||| |||||||||| |||||||||||
seq2  CA-TAGAAGAAAATGA-GGTGAAATTT-GTCCCAAGGC-TAGGCTGGGCC  93

seq1  ACTGGAAGAACTCCTGCTGGCATGGGCAGAGTCAAGAAGTTTAAAGGAAA  150
      ||| |||||||| ||||| |||||||||||||| ||||||||||||||||
seq2  ACT-GAAGAACT-CTGCT-GCATGGGCAGAGTC-AGAAGTTTAAAGGAAA  139

seq1  GACAAGAGGAATCTTTGCCTTTTCCCTGAATCTCAGAGCCCTATTTTCAA  200
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAC-AGA-GAATCTTTGCCTTTTCCCTGAATCTCAGAGCCCTATTTTCAA  187

seq1  ATTTTACCATTCCTACTGC-GGTTTGAGTGACCAGGAGCCCATCTGCCAG  249
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  A-TTTACCATTCCTACTGCGGGTTTGAGTGACCAGGAGCCCATCTGCCAG  236

seq1  TGAGG-AAGGCTGTAGCAAGTCTGTGGGCCACCGAAGGGGAACCCATAAG  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAGGCTGTAGCAAGTCTGTGGGCCACCGAAGGGGAACCCATAAG  286

seq1  CTATTATTGGCTTG-AAGAATATGTTATTTAGTTTAAATAGTAATT-AAA  346
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  CTATTATTGGCTTGAAAGAATATGTTATTTAGTTTAAATAGTAATTAAAA  336

seq1  AAGTCAACTAATTCAGGAAACTTTTCCATGAAATAATTTTGAGGTCTGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACTAATTCAGGAAACTTTTCCATGAAATAATTTTGAGGTCTGTT  386

seq1  TAAGTGTTAGCGATAGGTTGATGTGTCTCCAAGGAGACTGGGGCTACACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTAGCGATAGGTTGATGTGTCTCCAAGGAGACTGGGGCTACACT  436

seq1  ATGGTTTTTCATGAGTTTACATAGGGAGACTGCTCACCCTTTGCCCTGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTTCATGAGTTTACATAGGGAGACTGCTCACCCTTTGCCCTGTG  486

seq1  CTCTTCATCGGATCTACTTTCTACCTAAGCCTGTACTTCTGCAACCTCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATCGGATCTACTTTCTACCTAAGCCTGTACTTCTGCAACCTCTC  536

seq1  TGTGTCCTGAGTTTCTGGAGTCTCCTAGAAAAGAGAACGAAACATCCAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTGAGTTTCTGGAGTCTCCTAGAAAAGAGAACGAAACATCCAGA  586

seq1  CCCTGATAGTCTGGCTTGCTCATCACTGGCTTCATTGTAGCACTGCCCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATAGTCTGGCTTGCTCATCACTGGCTTCATTGTAGCACTGCCCTT  636

seq1  CCTTTGAGAGTAGAGTAAACAAAATACAGCGTCTGGTTAATGGTCTAGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGAGTAGAGTAAACAAAATACAGCGTCTGGTTAATGGTCTAGCT  686

seq1  ACTGCTGGGCAGATGCAGCATGACCAAGGCAACTCTTACAAAAATAAAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGGCAGATGCAGCATGACCAAGGCAACTCTTACAAAAATAAAAC  736

seq1  ATTTGATTTGAGGCTTGCTTATGGTTCCACAGAGTTAGTCCATGATCATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTGAGGCTTGCTTATGGTTCCACAGAGTTAGTCCATGATCATC  786

seq1  ATGGTGGGGAGCATGGCGGTAGACAGGCAAGTGTATGGCTGAGGCAGTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGGAGCATGGCGGTAGACAGGCAAGTGTATGGCTGAGGCAGTGG  836

seq1  CTGAGAACTCACATCTAATCTACATGTTTCAGAATGAGAGCGAAGAGGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTCACATCTAATCTACATGTTTCAGAATGAGAGCGAAGAGGGA  886

seq1  GACTGAGCCTTAGAAACCTAAAAGCCCATCCCTAGTGACACCGCTCTTCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGCCTTAGAAACCTAAAAGCCCATCCCTAGTGACACCGCTCTTCC  936

seq1  AACAAGGCCACACCTCCTAATCCTTTCCAAACAGTTCTACGAACTAGGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCCACACCTCCTAATCCTTTCCAAACAGTTCTACGAACTAGGGA  986

seq1  CCTAGCACTCAAATATACAAGCTTTTGATAGACATTGTTATTTAGACTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACTCAAATATACAAGCTTTTGATAGACATTGTTATTTAGACTAC  1036

seq1  CACATATGGAAATGTCTTTTTATGTGTATCTTTGAGCCAGTCCCCAGTAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGGAAATGTCTTTTTATGTGTATCTTTGAGCCAGTCCCCAGTAT  1086

seq1  CTAAGAATTC  1106
      ||||||||||
seq2  CTAAGAATTC  1096