BAC Information

Click to search

BAC

Clone NameB6Ng01-056A04
Chromosome18 (Build37)
Map Location 36,768,634 - 36,931,926
singlet/doubletdoublet
Overlap geneLOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars
Upstream genePaip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9
Downstream geneHars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056A04.bB6Ng01-056A04.g
ACCDH878303DH878304
length1,0631,006
definitionDH878303|Mus musculus domesticus DNA, BAC clone: B6Ng01-056A04, 5' end.DH878304|Mus musculus domesticus DNA, BAC clone: B6Ng01-056A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,768,634 - 36,769,705)(36,930,916 - 36,931,926)
sequence
gaattcaaaactaatttgggctctacagaatgaattcaaggccaacttgg
gttatagtgtgagatttttctctcacaacaaaattaaactataataaaaa
tattatgctcaagattgttttgattagctgtgtttgtaataacagagctg
ctgatgaatttgtgctgaaagctgttctggtatgttacatataataaata
cttatatagtcttgtttaataaaccaatcattttaagtttaaatgaagcc
aaccaaaggaaataggtatatatgtgattttttttccattattgttgttt
tgctttgctttaaataattttattacatttatttcttgtgtatatgcata
tatgtaccttgcttcatttgtggagatgagaggacaaccagaatcagatg
tctgcttccaccatgtggttccaggggttgacctcagctcattagattag
gccagcacctttacctactaaatcacatcactggcctgttgttgtttttg
tttttgtttttttgaggtggagtctgaggtagccaaggcttaccttaggc
tctttatttagttggagatggctttgaactgtttatgtgcatctacttcc
tgagtgctaggatgacaagcatgaaccattgaattgaatgtatggcagct
aagtgactttctaaattagtttaaaagaatggtgaaataaaaactgtcat
aatcaatttttctactgtttcctaataaaaatcaactggaacagcagaat
tcacatttacatacttagtataatttaaacatgaacctggaggataggta
agaaaacttcatagaaataaagttatcaacaatttcattactggtcctgc
gcacgcgcgggagccatattcgctgcggatgcttggccatccgggttggt
tcttctccagctgataaagaggcgctgatctgcaccctcacgtcttcctc
tggaatcaacataaagttcagaaaccatgtctcgagaatgacttcaggac
cacaatatttttctccagaagtcgcttatatcaagtgatatgcatggaag
cattggactgcag
gaattctatcaatgcgtgagtgtcagaaaactatggagctggatgggtaa
ctcaagccctctctcccatagggtctactgtgtgctatggcatcctgaac
acacactggatggtctcaaaaatgctcttagattcccttgatatttgcat
gtagacctcctaatgggttggtggacttgaagaataagacaaacaatcag
ttattcgtttaacaaatcagggctttttgaggacctggtttggtaggggt
tttcaggggcagtgggttgttttgtttagaaaaaaaaaattacttgcttt
tttttggtgctggggattggatgcaggactttgtacacactaggacacca
gggagctgttctagctccaggttctttattaccacagtattagaatccca
acagagaatgaagttttatgtattgcttctagactaatgttgcaagattt
ctgacagatggggaaaaaaatagcaaaagatttaaggtgcgaagggcttg
ggcaggagctcaatggtaaagtaatttcctcacatgcttgaagccccaga
attgccacagagacagacagacagacagacagacagacagacagacaggc
acagtgacagagatacactgactaaggctgggaagtttccccacaacagt
agaagaagctaaggaagatgaattgaatgaagaacaatagtttcataaca
ggcaggctaacaggactgctgagagccggagagtggatgatgagacaaaa
caaggggaaggcctgtgctcagatgccaacagagtagaagtttcagagtc
catcacatgccactcagcttcctctctccctgcaggatttgacattgccg
gacagttcgaccccatgattcctgatgcagagtgctaaagattatgtgcg
agatcctgagttcacttcagatcggcaacttcttgtcaagtcagagatgg
gaaaggactgggaggggaaggtgcggccttgccttctcccagttcatatc
ccatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36768634_36769705
seq2: B6Ng01-056A04.b_44_1106

seq1  GAATTCAAAACTAATTTGGGCTCTACAGAATGAATTCAAGGCCAACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACTAATTTGGGCTCTACAGAATGAATTCAAGGCCAACTTGG  50

seq1  GTTATAGTGTGAGATTTTTCTCTCACAACAAAATTAAACTATAATAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGTGTGAGATTTTTCTCTCACAACAAAATTAAACTATAATAAAAA  100

seq1  TATTATGCTCAAGATTGTTTTGATTAGCTGTGTTTGTAATAACAGAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGCTCAAGATTGTTTTGATTAGCTGTGTTTGTAATAACAGAGCTG  150

seq1  CTGATGAATTTGTGCTGAAAGCTGTTCTGGTATGTTACATATAATAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATTTGTGCTGAAAGCTGTTCTGGTATGTTACATATAATAAATA  200

seq1  CTTATATAGTCTTGTTTAATAAACCAATCATTTTAAGTTTAAATGAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATAGTCTTGTTTAATAAACCAATCATTTTAAGTTTAAATGAAGCC  250

seq1  AACCAAAGGAAATAGGTATATATGTGATTTTTTTTCCATTATTGTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGGAAATAGGTATATATGTGATTTTTTTTCCATTATTGTTGTTT  300

seq1  TGCTTTGCTTTAAATAATTTTATTACATTTATTTCTTGTGTATATGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCTTTAAATAATTTTATTACATTTATTTCTTGTGTATATGCATA  350

seq1  TATGTACCTTGCTTCATTTGTGGAGATGAGAGGACAACCAGAATCAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACCTTGCTTCATTTGTGGAGATGAGAGGACAACCAGAATCAGATG  400

seq1  TCTGCTTCCACCATGTGGTTCCAGGGGTTGACCTCAGCTCATTAGATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCACCATGTGGTTCCAGGGGTTGACCTCAGCTCATTAGATTAG  450

seq1  GCCAGCACCTTTACCTACTAAATCACATCACTGGCCTGTTGTTGTTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACCTTTACCTACTAAATCACATCACTGGCCTGTTGTTGTTTTTG  500

seq1  TTTTTGTTTTTTTGAGGTGGAGTCTGAGGTAGCCAAGGCTTACCTTAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTTGAGGTGGAGTCTGAGGTAGCCAAGGCTTACCTTAGGC  550

seq1  TCTTTATTTAGTTGGAGATGGCTTTGAACTGTTTATGTGCATCTACTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTAGTTGGAGATGGCTTTGAACTGTTTATGTGCATCTACTTCC  600

seq1  TGAGTGCTAGGATGACAAGCATGAACCATTGAATTGAATGTATGGCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTAGGATGACAAGCATGAACCATTGAATTGAATGTATGGCAGCT  650

seq1  AAGTGACTTTCTAAATTAGTTTAAAAGAATGGTGAAATAAAAACTGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTTTCTAAATTAGTTTAAAAGAATGGTGAAATAAAAACTGTCAT  700

seq1  AATCAATTTTTCTACTGTTTCCTAATAAAAATCAACTGGAACAGCAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATTTTTCTACTGTTTCCTAATAAAAATCAACTGGAACAGCAGAAT  750

seq1  TCACATTTACATACTTAGTATAATTTAAACATGAACCTGGAGGATAGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTACATACTTAGTATAATTTAAACATGAACCTGGAGGATAGGTA  800

seq1  AGAAAACTTCATAGAAATAAAGTTATCAACAATTTCATTACTGGTCCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTTCATAGAAATAAAGTTATCAACAATTTCATTACTGGTCCTGC  850

seq1  GCACGCGCGGGAGCCATATTCGCTGCGGATGCTTGGCCATCCGGGTTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCGCGGGAGCCATATTCGCTGCGGATGCTTGGCCATCCGGGTTGGT  900

seq1  TCTTCTCCAGCTGAATAAAGAGGCGCTGATCTGCACCCTCACCGTCTTCC  950
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  TCTTCTCCAGCTG-ATAAAGAGGCGCTGATCTGCACCCTCA-CGTCTTCC  948

seq1  TCTGGAATCAACATAAAGTTCAGAAACCATGTCTCGAAGATATGACTCCA  1000
      |||||||||||||||||||||||||||||||||||| ||| |||||| ||
seq2  TCTGGAATCAACATAAAGTTCAGAAACCATGTCTCG-AGA-ATGACTTCA  996

seq1  GGACCACAATA-TTTTCTCCAGAAGGTCGCTTATACCAAGTGGAATATGC  1049
      ||||||||||| |||||||||||| |||||||||| ||||||  ||||| 
seq2  GGACCACAATATTTTTCTCCAGAA-GTCGCTTATATCAAGTG--ATATG-  1042

seq1  CATGGAAGCCATTGGACATGCAG  1072
      |||||||| |||||||| |||||
seq2  CATGGAAG-CATTGGAC-TGCAG  1063

seq1: chr18_36930916_36931926
seq2: B6Ng01-056A04.g_67_1072 (reverse)

seq1  ACATGGGCTACTGAACTGTGAG-AGGCCAGGCCGCACCTTCCCCTCCCAG  49
      ||||||| || ||||||| ||| |||| ||||||||||||||||||||||
seq2  ACATGGGATA-TGAACTGGGAGAAGGCAAGGCCGCACCTTCCCCTCCCAG  49

seq1  TCCTAT-CCATCTCTGACCTTGACCAGGAAGTTGCCGATCTGAAGTGAAC  98
      |||| | |||||||||| ||||| || |||||||||||||||||||||||
seq2  TCCTTTCCCATCTCTGA-CTTGA-CAAGAAGTTGCCGATCTGAAGTGAAC  97

seq1  TCAGGATCTCGCACATAATCTTTAGGCACTCTGCATCAGGAATCATGGGG  148
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCAGGATCTCGCACATAATCTTTA-GCACTCTGCATCAGGAATCATGGGG  146

seq1  TCGAACTGTCCGGCAATGTCAAAATCCTGCAGGGAGAGAGGAAGCTGAGT  198
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCGAACTGTCCGGCAATGTC-AAATCCTGCAGGGAGAGAGGAAGCTGAGT  195

seq1  GGCATGTGATGGACTCCTGAAACTTCTACTCTGTTGGCATCTGAGCACAG  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCATGTGATGGACT-CTGAAACTTCTACTCTGTTGGCATCTGAGCACAG  244

seq1  GCCTTCCCCTTTGTTTTGTCTCATCATCCACTCTCCGGCTCTCAGCAGTC  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCC-TTGTTTTGTCTCATCATCCACTCTCCGGCTCTCAGCAGTC  293

seq1  CTGTTAGCCTGCCTGTTATGAAACTATTGTTCTTCATTCAATTCATCTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGCCTGCCTGTTATGAAACTATTGTTCTTCATTCAATTCATCTTC  343

seq1  CTTAGCTTCTTCTACTGTTGTGGGGAAACTTCCCAGCCTTAGTCAGTGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTCTTCTACTGTTGTGGGGAAACTTCCCAGCCTTAGTCAGTGTA  393

seq1  TCTCTGTCACTGTGCCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCACTGTGCCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG  443

seq1  TCTCTGTGGCAATTCTGGGGCTTCAAGCATGTGAGGAAATTACTTTACCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGGCAATTCTGGGGCTTCAAGCATGTGAGGAAATTACTTTACCA  493

seq1  TTGAGCTCCTGCCCAAGCCCTTCGCACCTTAAATCTTTTGCTATTTTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCCTGCCCAAGCCCTTCGCACCTTAAATCTTTTGCTATTTTTTT  543

seq1  CCCCATCTGTCAGAAATCTTGCAACATTAGTCTAGAAGCAATACATAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTGTCAGAAATCTTGCAACATTAGTCTAGAAGCAATACATAAAA  593

seq1  CTTCATTCTCTGTTGGGATTCTAATACTGTGGTAATAAAGAACCTGGAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCTCTGTTGGGATTCTAATACTGTGGTAATAAAGAACCTGGAGC  643

seq1  TAGAACAGCTCCCTGGTGTCCTAGTGTGTACAAAGTCCTGCATCCAATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAGCTCCCTGGTGTCCTAGTGTGTACAAAGTCCTGCATCCAATCC  693

seq1  CCAGCACCAAAAAAAAGCAAGTAATTTTTTTTTTCTAAACAAAACAACCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCAAAAAAAAGCAAGTAATTTTTTTTTTCTAAACAAAACAACCC  743

seq1  ACTGCCCCTGAAAACCCCTACCAAACCAGGTCCTCAAAAAGCCCTGATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCCTGAAAACCCCTACCAAACCAGGTCCTCAAAAAGCCCTGATTT  793

seq1  GTTAAACGAATAACTGATTGTTTGTCTTATTCTTCAAGTCCACCAACCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACGAATAACTGATTGTTTGTCTTATTCTTCAAGTCCACCAACCCA  843

seq1  TTAGGAGGTCTACATGCAAATATCAAGGGAATCTAAGAGCATTTTTGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGTCTACATGCAAATATCAAGGGAATCTAAGAGCATTTTTGAGA  893

seq1  CCATCCAGTGTGTGTTCAGGATGCCATAGCACACAGTAGACCCTATGGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGTGTGTGTTCAGGATGCCATAGCACACAGTAGACCCTATGGGA  943

seq1  GAGAGGGCTTGAGTTACCCATCCAGCTCCATAGTTTTCTGACACTCACGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGCTTGAGTTACCCATCCAGCTCCATAGTTTTCTGACACTCACGC  993

seq1  ATTGATAGAATTC  1011
      |||||||||||||
seq2  ATTGATAGAATTC  1006