BAC Information

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BAC

Clone NameB6Ng01-056P22
Chromosome18 (Build37)
Map Location 80,287,684 - 80,359,306
singlet/doubletdoublet
Overlap genePard6g, Zfp508
Upstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825
Downstream geneLOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056P22.bB6Ng01-056P22.g
ACCDH878991DH878992
length5471,072
definitionDH878991|Mus musculus domesticus DNA, BAC clone: B6Ng01-056P22, 5' end.DH878992|Mus musculus domesticus DNA, BAC clone: B6Ng01-056P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,358,747 - 80,359,306)(80,287,684 - 80,288,771)
sequence
ttttcctagacttggggaactttctgctacggtatcattctgtagttcgt
tctctctctctctctctctctctctctctctctctctctatctatactca
caccccccctttctttgagtagggtttctctatgaagccttggctgtcct
gaaactcactctgtaaaccagactggcctcaagctcagagcttcaaatgc
atctgtcttgtgagtgctgggattaagggtgtgagccaccaccatccaac
actgtatgttttctataactttagtttattagaattcactctaccggcaa
aatgtaattaagtgtttgtttttcttaccttttattgctatttttctaca
tatattatcaagtctttcatccccatcctcattgaactcttttatttgcg
tctgaatatttgacaacttgttggatctcttcacaagtttcttctttctt
ttttccttctacctgccctctttttccccacctcttccttctccctcaat
cctctgccatctactgcccctgttcaacttcttcctcaagcagtgga
gaattcccctctataagaattttaacctcaggatgcctcagacctcgttc
cctgtatgtggccttatataacctgggtttgcctcagctctcagccccag
gagtcttgggatgtagtccgtggcccaacttctccatgactcagcacata
ggggagtctgagctgtcacctgagagcacacagagcccttatttctgtgc
attatggcaaggaggtcattgcttctccccgttcggagtccagagataca
gaaatttccaccatgacctctctttttccaaaaactctggggaaagttgc
tttcctcttacacagcacttttcccttcctgttttgcctttatctctgta
gctgctgcctcccctgtgggaaagtgggtcagcacaggggtcaccacctg
tgtgcgagggctcctcctccagccgcgctactgcagttccacacaggcag
aaggctagggtgaggacgcccatggagctcagagctgcttactttggggt
tgtttttatgtcgggggtgggctcaccctgggtagactttatgaaattat
gaaggatagtagtgacactaacatactgatccgctttttataaaacttgt
ggtgtggatgtatcatcttagccatttgtagatacgtggttcagtggcaa
tccacgtgtccacactgttaggtgagtatcaccaccatccacctcagaac
tttccagcctttggtacctcaaggtacagattactataaaaaagcaaaga
agagctttttctaattgatatctgtctgtggccttgttggatattccaga
tcaaaggcaaggaattacattttttttttttttttgtttcaaaaagcaaa
tcacttgagaactagctgtctcatgctaaaatacgttcctcgagacctca
ggcccttgcccgctggctgtggcacttgcccactgtctcatccctgctct
atgcacagacacccttgcaaagacaataagaaatatgctctagcacttct
ggtgatgtgactaggttcacagtgtgcaaacttggcagagtgttttcagc
tcatgcagcctaggccctgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_80358747_80359306
seq2: B6Ng01-056P22.b_48_600 (reverse)

seq1  TCCAGTGCTGGAGGAAGAAGTGGTACAGGGGCAGAAGGTGGCAGAGGACT  50
      |||| |||| ||||||||||| | |||||||||| || |||||||||| |
seq2  TCCACTGCTTGAGGAAGAAGTTGAACAGGGGCAGTAGATGGCAGAGGA-T  49

seq1  TCAGGGAGAAGGAAGAGGAGGGGAAGGAAGAGGGCAGGGGGAAGGAGAAA  100
      | |||||||||||||||| ||||||  |||||||||||  |||||| |||
seq2  TGAGGGAGAAGGAAGAGGTGGGGAA-AAAGAGGGCAGGTAGAAGGAAAAA  98

seq1  AGAAAGAAGAAACTTGTGAAGTGCTCCAACAAGGAGTCAAATAAACAGAT  150
      ||||||||||||||||||||| | |||||||||  ||||||||  |||| 
seq2  AGAAAGAAGAAACTTGTGAAGAGATCCAACAAGTTGTCAAATATTCAGAC  148

seq1  GAAAGAAAAAGAACTCAGTCCGAGATGCGGATGAAAGACTCGATAACTGG  200
      | ||  ||||||  ||| |  | |||| |||||||||||| |||||    
seq2  GCAAATAAAAGAGTTCAATGAG-GATGGGGATGAAAGACTTGATAATATA  197

seq1  TGTGAGAAAATTAGCAATAAAAGGTGAATAAAAATAAACTAAGTAATTAC  250
      ||| |||||| |||||||||||||| || ||||| |||| |  |||||||
seq2  TGT-AGAAAAATAGCAATAAAAGGT-AAGAAAAACAAAC-ACTTAATTAC  244

seq1  AATAAACCAGTAAAATAAATTCTAATAAACTAAAGTTATAGAAAACATAC  300
      | |   || ||| | | |||||||||||||||||||||||||||||||||
seq2  ATTTTGCCGGTAGAGTGAATTCTAATAAACTAAAGTTATAGAAAACATAC  294

seq1  AGTGCTGGATGGTGGTGGCACACACCCTTAATCCCAGCACTCACAAGACA  350
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTGTTGGATGGTGGTGGCTCACACCCTTAATCCCAGCACTCACAAGACA  344

seq1  GAGGCAGTTGAAGCTCTGAGCTTGAGGCCAGTCTGGTCTACAGAGTGAGT  400
      || ||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  GATGCATTTGAAGCTCTGAGCTTGAGGCCAGTCTGGTTTACAGAGTGAGT  394

seq1  TTCAGGACAGCCAAGGCTACATAGAGAAACCCTGTCTCAAAGAAAGGGGG  450
      |||||||||||||||||| ||||||||||||||  |||||||||||||||
seq2  TTCAGGACAGCCAAGGCTTCATAGAGAAACCCT-ACTCAAAGAAAGGGGG  443

seq1  GGTGGGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  500
      |||| ||| | ||| |||||||||||||||||||||||||||||||||||
seq2  GGTGTGAGTATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  493

seq1  GAGAACGAACTACAGAATGATACCGTAGCAGAAAGTTCCCCAAGTCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACGAACTACAGAATGATACCGTAGCAGAAAGTTCCCCAAGTCTAGG  543

seq1  AAAAGAATTC  560
      ||||||||||
seq2  AAAAGAATTC  553

seq1: chr18_80287684_80288771
seq2: B6Ng01-056P22.g_68_1139

seq1  GAATTCCCCTCTATAAGAATTTTAACCTCAGGATGCCTCAGACCTCGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCTATAAGAATTTTAACCTCAGGATGCCTCAGACCTCGTTC  50

seq1  CCTGTATGTGGCCTTATATAACCTGGGTTTGCCTCAGCTCTCAGCCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGTGGCCTTATATAACCTGGGTTTGCCTCAGCTCTCAGCCCCAG  100

seq1  GAGTCTTGGGATGTAGTCCGTGGCCCAACTTCTCCATGACTCAGCACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGGGATGTAGTCCGTGGCCCAACTTCTCCATGACTCAGCACATA  150

seq1  GGGGAGTCTGAGCTGTCACCTGAGAGCACACAGAGCCCTTATTTCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTCTGAGCTGTCACCTGAGAGCACACAGAGCCCTTATTTCTGTGC  200

seq1  ATTATGGCAAGGAGGTCATTGCTTCTCCCCGTTCGGAGTCCAGAGATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGCAAGGAGGTCATTGCTTCTCCCCGTTCGGAGTCCAGAGATACA  250

seq1  GAAATTTCCACCATGACCTCTCTTTTTCCAAAAACTCTGGGGAAAGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCCACCATGACCTCTCTTTTTCCAAAAACTCTGGGGAAAGTTGC  300

seq1  TTTCCTCTTACACAGCACTTTTCCCTTCCTGTTTTGCCTTTATCTCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTACACAGCACTTTTCCCTTCCTGTTTTGCCTTTATCTCTGTA  350

seq1  GCTGCTGCCTCCCCTGTGGGAAAGTGGGTCAGCACAGGGGTCACCACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCCTCCCCTGTGGGAAAGTGGGTCAGCACAGGGGTCACCACCTG  400

seq1  TGTGCGAGGGCTCCTCCTCCAGCCGCGCTACTGCAGTTCCACACAGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGAGGGCTCCTCCTCCAGCCGCGCTACTGCAGTTCCACACAGGCAG  450

seq1  AAGGCTAGGGTGAGGACGCCCATGGAGCTCAGAGCTGCTTACTTTGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGGGTGAGGACGCCCATGGAGCTCAGAGCTGCTTACTTTGGGGT  500

seq1  TGTTTTTATGTCGGGGGTGGGCTCACCCTGGGTAGACTTTATGAAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATGTCGGGGGTGGGCTCACCCTGGGTAGACTTTATGAAATTAT  550

seq1  GAAGGATAGTAGTGACACTAACATACTGATCCGCTTTTTATAAAACTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATAGTAGTGACACTAACATACTGATCCGCTTTTTATAAAACTTGT  600

seq1  GGTGTGGATGTATCATCTTAGCCATTTGTAGATACGTGGTTCAGTGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGATGTATCATCTTAGCCATTTGTAGATACGTGGTTCAGTGGCAA  650

seq1  TCCACGTGTCCACACTGTTAGGTGAGTATCACCACCATCCACCTCAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTGTCCACACTGTTAGGTGAGTATCACCACCATCCACCTCAGAAC  700

seq1  TTTCCAGCCTTTGGTACCTCAAGGTACAGATTACTATAAAAAAGCAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCCTTTGGTACCTCAAGGTACAGATTACTATAAAAAAGCAAAGA  750

seq1  AGAGCTTTTTCTAATTGATATCTGTCTGTGGCCTTGTTGGATATTCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTTTCTAATTGATATCTGTCTGTGGCCTTGTTGGATATTCCAGA  800

seq1  TCAAAGGCAAGGAATTACA-TTTTTTTTTTTTTTTGTTTCAAAAAGCAAA  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCAAAGGCAAGGAATTACATTTTTTTTTTTTTTTTGTTTCAAAAAGCAAA  850

seq1  TCACTTGAGAACTAGCTGTCTCATGCTAAAATACGTTCCTCGAGACCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGAGAACTAGCTGTCTCATGCTAAAATACGTTCCTCGAGACCTCA  900

seq1  GGCCCTTGCCCGCTGGCTGTGGCCACTTGCCCACTGTCTCATCCCTGCCT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||  
seq2  GGCCCTTGCCCGCTGGCTGTGG-CACTTGCCCACTGTCTCATCCCTGC--  947

seq1  CCTATGCACAGACACCCCTTGGCAAAGAC-ATAAGAAATATGGCTCTAAG  998
       ||||||||||||||||  | |||||||| ||||||||||| ||||| ||
seq2  TCTATGCACAGACACCC--TTGCAAAGACAATAAGAAATAT-GCTCT-AG  993

seq1  CACCTCT-GTGATGTGACTAGGGTTCACAGTGTGCACACTGGGGCCAGGA  1047
      ||| ||| |||||||||||| ||||||||||||||| ||| ||  |||  
seq2  CACTTCTGGTGATGTGACTA-GGTTCACAGTGTGCAAACTTGG--CAG--  1038

seq1  AGGTGTTTCCCAGCTCATGCAGAGCGCTAGGCGCTCTGATC  1088
        ||||||  ||||||||||||    ||||  || ||||||
seq2  -AGTGTTT-TCAGCTCATGCAG---CCTAG--GCCCTGATC  1072