BAC Information

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BAC

Clone NameB6Ng01-057M02
Chromosome18 (Build37)
Map Location 28,019,569 - 28,130,202
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977, EG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057M02.bB6Ng01-057M02.g
ACCDH879530DH879531
length1,0711,083
definitionDH879530|Mus musculus domesticus DNA, BAC clone: B6Ng01-057M02, 5' end.DH879531|Mus musculus domesticus DNA, BAC clone: B6Ng01-057M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,129,109 - 28,130,202)(28,019,569 - 28,020,657)
sequence
gaattcaaaatgccaggcccagaagcttatgttttaagggaaaattgtaa
agtcattgttgcacatgaaatattttcaatatctctggaagcccattgat
ttttgtaagtaaattttacttaaaagtagctcccttaattcatgtcgtag
gattcagttacttatgtttgtctattgttttattaataatatgtgatgaa
gaagctcagagccacaaggttgtttgtatgacaagacaaagatcagaaaa
cataagatacaaaaatgatgctggcaaaatagcaactatctgatcaagca
tttttactgagaaattttacagctctctgtatttaaatccaccagaagtt
tcactctattttactactttcttcacttgcaaagacatcacaaacttttc
ttccagacacctgaactgaactcaaaacattatttctatttgtttctaag
aagtggaaaaaatgttatatcattgttttgccttattgttgtgaaatttc
agatgcttattgctaacatgtcacagccaagtcttttgttcagatactag
tggctgtcagttacggatgcctttagagcactggaataaatatttgcttg
cagagcaataccaggtattgtagatttccactgcaaaattttgctctgta
acactactttagacatttatatctagaaacaataagctagtttcttccaa
aattccaggcacactcatagacatggaaaagtattgtaaaagtaatacat
gaaattcgaccatatttttaaaattatagacaccagtattaggtatccat
tgctgaaaaattagttccacagacaggttaagtatgtaaacaattaaatg
atcttactaaaaccattcatacagcttgatgaagcactactctcgttaac
ctcactgctgaagttgggatttcctccctcaagccaagttaacttagata
tatcataatcatctttcattatatttccacaggtgtattggtccaatcta
aagagcatcagcttaatatgcaattggcaggagacaaagtttcatcagaa
gacagtacatttagatgaggg
gaattcaattaaatacagaaaataggagattttgtttagctaacatattt
gtcttaaaaggcattgaaaggattctacaatcttttccagttgggcttta
aaactgaaagcctgttaggttgaaataagaatagtctggtcactttctac
agaagataggaagaacagagcatttttgtgtataaatttcgttttaatga
ataaagtaaaggagttaaatatttagtttattgatgaaaaatcataattc
tttcccaattatggatgacactagccattcagttatgagtagaatcatat
ctattgggaaaggcagctgacccttaaagaactggaaggcagccttctgt
ctaaaaattagatcttcatctcatgtttactattaggaacacttgaggct
gtgaccatactcacacataagaagacaggtaattattattgtaaaaggat
tatgttattttgtaagcaaaacccataaatacagaaaaattcaaaggaaa
aattagaatagaagaaagaaaggagagaaaaagaggaggagagaaagcta
tgctggctatctcagaaggttgaccaggaaaggaaagagggcttgaggcc
agcaaggcttaaatctgtgggttcatgacgaaatggcatctagtccatgc
tgagtagaaaatatgggatctagtttaatgcattttaaaatttcccacct
aaaatctactggaatattccctttgacacaactcctaacttgtcccttga
tcccttgttctattgttgaattcaagaaaagttctttctcagttaagcat
tcattctttcattggacaagtgtttgatgactggggaagagactgatcat
tatatactactttataatgcataactcttcctatataggaacatacctca
gaaatttcctttaatttctttcttaggaattagtcacttctttcacatat
gaaaatcattctacagttcttctagaagtgctatacaaccaaggtcagta
agctagataggcacaggatcttaagagccaaagtcgttttttagagttta
aggatgttagcttgcctggtgaatttacttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28129109_28130202
seq2: B6Ng01-057M02.b_47_1117 (reverse)

seq1  CCCTCATTCTAAAATGTACCTTGTCTTCTGATTGGAAACTATGTCTCCCT  50
      |||||| ||| ||||||||  |||||||||||  |||||| ||||| |||
seq2  CCCTCA-TCT-AAATGTAC--TGTCTTCTGAT--GAAACTTTGTCT-CCT  43

seq1  GCCAAATTGCATTAATTTAAGCTGATGGCTTCTTTTAAGATTGGACCAAA  100
      ||| ||||||||    |||||||||||    || || ||||||||||  |
seq2  GCC-AATTGCAT---ATTAAGCTGATG----CTCTTTAGATTGGACC--A  83

seq1  ATACACCTGTGGAAATATTAATGAAAGATGATTTATGATATATCCTAAGT  150
      ||||||||||||||||| ||||||||||||| ||||||||||| ||||||
seq2  ATACACCTGTGGAAATA-TAATGAAAGATGA-TTATGATATAT-CTAAGT  130

seq1  TAACTTTGGCTTTGAGGGAGGAAATCCCAACTTCAGCAGTTGAGGTTAAC  200
      |||| ||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TAAC-TTGGC-TTGAGGGAGGAAATCCCAACTTCAGCAG-TGAGGTTAAC  177

seq1  GAGAGTAGTGCTTCATCAAGCTGTATGAATGGTTTTAGTAAGATCATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAGTGCTTCATCAAGCTGTATGAATGGTTTTAGTAAGATCATTTA  227

seq1  ATTGTTTACATACTTAACCTGTCTGTGGAACTAATTTTTCAGCAATGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTACATACTTAACCTGTCTGTGGAACTAATTTTTCAGCAATGGAT  277

seq1  ACCTAATACTGGTGTCTATAATTTTAAAAATATGGTCGAATTTCATGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATACTGGTGTCTATAATTTTAAAAATATGGTCGAATTTCATGTAT  327

seq1  TACTTTTACAATACTTTTCCATGTCTATGAGTGTGCCTGGAATTTTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTACAATACTTTTCCATGTCTATGAGTGTGCCTGGAATTTTGGAA  377

seq1  GAAACTAGCTTATTGTTTCTAGATATAAATGTCTAAAGTAGTGTTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGCTTATTGTTTCTAGATATAAATGTCTAAAGTAGTGTTACAGA  427

seq1  GCAAAATTTTGCAGTGGAAATCTACAATACCTGGTATTGCTCTGCAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTTTGCAGTGGAAATCTACAATACCTGGTATTGCTCTGCAAGCA  477

seq1  AATATTTATTCCAGTGCTCTAAAGGCATCCGTAACTGACAGCCACTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTCCAGTGCTCTAAAGGCATCCGTAACTGACAGCCACTAGTA  527

seq1  TCTGAACAAAAGACTTGGCTGTGACATGTTAGCAATAAGCATCTGAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACAAAAGACTTGGCTGTGACATGTTAGCAATAAGCATCTGAAATT  577

seq1  TCACAACAATAAGGCAAAACAATGATATAACATTTTTTCCACTTCTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAATAAGGCAAAACAATGATATAACATTTTTTCCACTTCTTAGA  627

seq1  AACAAATAGAAATAATGTTTTGAGTTCAGTTCAGGTGTCTGGAAGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAGAAATAATGTTTTGAGTTCAGTTCAGGTGTCTGGAAGAAAAG  677

seq1  TTTGTGATGTCTTTGCAAGTGAAGAAAGTAGTAAAATAGAGTGAAACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATGTCTTTGCAAGTGAAGAAAGTAGTAAAATAGAGTGAAACTTC  727

seq1  TGGTGGATTTAAATACAGAGAGCTGTAAAATTTCTCAGTAAAAATGCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGATTTAAATACAGAGAGCTGTAAAATTTCTCAGTAAAAATGCTTG  777

seq1  ATCAGATAGTTGCTATTTTGCCAGCATCATTTTTGTATCTTATGTTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATAGTTGCTATTTTGCCAGCATCATTTTTGTATCTTATGTTTTCT  827

seq1  GATCTTTGTCTTGTCATACAAACAACCTTGTGGCTCTGAGCTTCTTCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGTCTTGTCATACAAACAACCTTGTGGCTCTGAGCTTCTTCATC  877

seq1  ACATATTATTAATAAAACAATAGACAAACATAAGTAACTGAATCCTACGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTATTAATAAAACAATAGACAAACATAAGTAACTGAATCCTACGA  927

seq1  CATGAATTAAGGGAGCTACTTTTAAGTAAAATTTACTTACAAAAATCAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTAAGGGAGCTACTTTTAAGTAAAATTTACTTACAAAAATCAAT  977

seq1  GGGCTTCCAGAGATATTGAAAATATTTCATGTGCAACAATGACTTTACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCCAGAGATATTGAAAATATTTCATGTGCAACAATGACTTTACAA  1027

seq1  TTTTCCCTTAAAACATAAGCTTCTGGGCCTGGCATTTTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTAAAACATAAGCTTCTGGGCCTGGCATTTTGAATTC  1071

seq1: chr18_28019569_28020657
seq2: B6Ng01-057M02.g_67_1149

seq1  GAATTCAATTAAATACAGAAAATAGGAGATTTTGTTTAGCTAACATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAATACAGAAAATAGGAGATTTTGTTTAGCTAACATATTT  50

seq1  GTCTTAAAAGGCATTGAAAGGATTCTACAATCTTTTCCAGTTGGGCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAAGGCATTGAAAGGATTCTACAATCTTTTCCAGTTGGGCTTTA  100

seq1  AAACTGAAAGCCTGTTAGGTTGAAATAAGAATAGTCTGGTCACTTTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAAGCCTGTTAGGTTGAAATAAGAATAGTCTGGTCACTTTCTAC  150

seq1  AGAAGATAGGAAGAACAGAGCATTTTTGTGTATAAATTTCGTTTTAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATAGGAAGAACAGAGCATTTTTGTGTATAAATTTCGTTTTAATGA  200

seq1  ATAAAGTAAAGGAGTTAAATATTTAGTTTATTGATGAAAAATCATAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAAAGGAGTTAAATATTTAGTTTATTGATGAAAAATCATAATTC  250

seq1  TTTCCCAATTATGGATGACACTAGCCATTCAGTTATGAGTAGAATCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAATTATGGATGACACTAGCCATTCAGTTATGAGTAGAATCATAT  300

seq1  CTATTGGGAAAGGCAGCTGACCCTTAAAGAACTGGAAGGCAGCCTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGGAAAGGCAGCTGACCCTTAAAGAACTGGAAGGCAGCCTTCTGT  350

seq1  CTAAAAATTAGATCTTCATCTCATGTTTACTATTAGGAACACTTGAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATTAGATCTTCATCTCATGTTTACTATTAGGAACACTTGAGGCT  400

seq1  GTGACCATACTCACACATAAGAAGACAGGTAATTATTATTGTAAAAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCATACTCACACATAAGAAGACAGGTAATTATTATTGTAAAAGGAT  450

seq1  TATGTTATTTTGTAAGCAAAACCCATAAATACAGAAAAATTCAAAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATTTTGTAAGCAAAACCCATAAATACAGAAAAATTCAAAGGAAA  500

seq1  AATTAGAATAGAAGAAAGAAAGGAGAGAAAAAGAGGAGGAGAGAAAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAATAGAAGAAAGAAAGGAGAGAAAAAGAGGAGGAGAGAAAGCTA  550

seq1  TGCTGGCTATCTCAGAAGGTTGACCAGGAAAGGAAAGAGGGCTTGAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTATCTCAGAAGGTTGACCAGGAAAGGAAAGAGGGCTTGAGGCC  600

seq1  AGCAAGGCTTAAATCTGTGGGTTCATGACGAAATGGCATCTAGTCCATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCTTAAATCTGTGGGTTCATGACGAAATGGCATCTAGTCCATGC  650

seq1  TGAGTAGAAAATATGGGATCTAGTTTAATGCATTTTAAAATTTCCCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGAAAATATGGGATCTAGTTTAATGCATTTTAAAATTTCCCACCT  700

seq1  AAAATCTACTGGAATATTCCCTTTGACACAACTCCTAACTTGTCCCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTACTGGAATATTCCCTTTGACACAACTCCTAACTTGTCCCTTGA  750

seq1  TCCCTTGTTCTATTGTTGAATTCAAGAAAAGTTCTTTCTCAGTTAAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTTCTATTGTTGAATTCAAGAAAAGTTCTTTCTCAGTTAAGCAT  800

seq1  TCATTCTTTCATTGGACAAGTGTTTGATGACTGGGGAAGAGACTGATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTCATTGGACAAGTGTTTGATGACTGGGGAAGAGACTGATCAT  850

seq1  TATATACTACTTTATAATGCATAACTCTTCCTATATAGGAACATACCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTACTTTATAATGCATAACTCTTCCTATATAGGAACATACCTCA  900

seq1  GAAATTTCCTTTAATTTCTTTCTTAGGAAATTAGTCACTTCTTTCACATA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAATTTCCTTTAATTTCTTTCTTAGG-AATTAGTCACTTCTTTCACATA  949

seq1  TGAAAATCATTCTACAGTTCTTCTAGAAAGTGCTATACAACCAAGGTCAG  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAAAATCATTCTACAGTTCTTCTAG-AAGTGCTATACAACCAAGGTCAG  998

seq1  TAAGCTAGATAAGGCACAGGATCTTAAGAGGCCAAAGTCGTTTTCTAGAG  1050
      |||||||||| |||||||||||||||||| |||||||||||||| |||| 
seq2  TAAGCTAGAT-AGGCACAGGATCTTAAGA-GCCAAAGTCGTTTTTTAGA-  1045

seq1  GTGTAAGGAATGTTAGCTTGCCT-GTGAATTTAACTTCAA  1089
      || ||||| |||||||||||||| |||||||| |||||||
seq2  GTTTAAGG-ATGTTAGCTTGCCTGGTGAATTT-ACTTCAA  1083