BAC Information

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BAC

Clone NameB6Ng01-057O16
Chromosome8 (Build37)18 (Build37)
Map Location 98,425,121 - 98,426,05049,554,051 - 49,554,590
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCcdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2
Downstream geneLOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057O16.bB6Ng01-057O16.g
ACCDH879636DH879637
length928800
definitionDH879636|Mus musculus domesticus DNA, BAC clone: B6Ng01-057O16, 5' end.DH879637|Mus musculus domesticus DNA, BAC clone: B6Ng01-057O16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,425,121 - 98,426,050)(49,554,051 - 49,554,590)
sequence
gaattctccatcttcaaaggcaaccaggaaagacttgagtctggccagac
gtgagcatagatgtgagaactcaaagcctgaccccacagcgacacacccc
ttcaacaaggccacacctacttcagcaagaacacacctcctaatagtgtc
acaccctgcgggccaagcattcaaacactatgggggccaaacctattgga
accatcacaggacaagacctcttccctccagtagaagcccttacagcatc
ttgagtgtggggtggcatttacggcactcacctttccagtggccctttca
ccacattgaaagcaagccccttctgtttctattgctgctgcaaaggcctg
ggcctaatgggatgctgtcccaatatcctgagtggctacagtccatctat
cacagtgctcatctttgaggtcttggcaggtgagcctgcattcggaagcc
atacccgcccaaatgacatttttaaagaaggaggccttttttctttctaa
gctcattttagtactagttttagtagaggcttccactggagggaggcggg
ggaggaaagctccctctgttttctgctccctttatctgttgtccactaat
gtgtgggtccctcagcgtgcactaaaggataccttactccccccaacgcc
acatcagatgaccgatgatgatagatgttctgaagaccgtctggttgcag
acctcatagccctagaaaaaggccagagaggagatttcacaaaacaatag
cttcctctctcagttgcacattctggccacacccactgcactctgtgccc
tcctttcctttgtcttctgtgttgcaccaagggacagtcctccctccgcc
cctccttccactccctagaaggtctgcgacctctgggactctgctgtggg
ctcggagatccagcatttctgggtaatg
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgtttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgttat
taggattttgtccctgtgccctttagtgagtctagctaagggtttaatct
atctttgttgatttctcaaagaaccaactcctcgtttggtaatctttgaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_98425121_98426050
seq2: B6Ng01-057O16.b_44_971

seq1  GAATTCTCCATCTTCAAAGGCAACCAGGAAAGACTTGAGTCTGGCCAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCTTCAAAGGCAACCAGGAAAGACTTGAGTCTGGCCAGAC  50

seq1  GTGAGCATAGATGTGAGAACTCAAAGCCTGACCCCACAGCGACACACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATAGATGTGAGAACTCAAAGCCTGACCCCACAGCGACACACCCC  100

seq1  TTCAACAAGGCCACACCTACTTCAGCAAGAACACACCTCCTAATAGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAGGCCACACCTACTTCAGCAAGAACACACCTCCTAATAGTGTC  150

seq1  ACACCCTGCGGGCCAAGCATTCAAACACTATGGGGGCCAAACCTATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGCGGGCCAAGCATTCAAACACTATGGGGGCCAAACCTATTGGA  200

seq1  ACCATCACAGGACAAGACCTCTTCCCTCCAGTAGAAGCCCTTACAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACAGGACAAGACCTCTTCCCTCCAGTAGAAGCCCTTACAGCATC  250

seq1  TTGAGTGTGGGGTGGCATTTACGGCACTCACCTTTCCAGTGGCCCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGTGGGGTGGCATTTACGGCACTCACCTTTCCAGTGGCCCTTTCA  300

seq1  CCACATTGAAAGCAAGCCCCTTCTGTTTCTATTGCTGCTGCAAAGGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTGAAAGCAAGCCCCTTCTGTTTCTATTGCTGCTGCAAAGGCCTG  350

seq1  GGCCTAATGGGATGCTGTCCCAATATCCTGAGTGGCTACAGTCCATCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAATGGGATGCTGTCCCAATATCCTGAGTGGCTACAGTCCATCTAT  400

seq1  CACAGTGCTCATCTTTGAGGTCTTGGCAGGTGAGCCTGCATTCGGAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCTCATCTTTGAGGTCTTGGCAGGTGAGCCTGCATTCGGAAGCC  450

seq1  ATACCCGCCCAAATGACATTTTTAAAGAAGGAGGCCTTTTTTCTTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCGCCCAAATGACATTTTTAAAGAAGGAGGCCTTTTTTCTTTCTAA  500

seq1  GCTCATTTTAGTACTAGTTTTAGTAGAGGCTTCCACTGGAGGGAGGCGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTTAGTACTAGTTTTAGTAGAGGCTTCCACTGGAGGGAGGCGGG  550

seq1  GGAGGAAAGCTCCCTCTGTTTTCTGCTCCCTTTATCTGTTGTCCACTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAGCTCCCTCTGTTTTCTGCTCCCTTTATCTGTTGTCCACTAAT  600

seq1  GTGTGGGTCCCTCAGCGTGCACT-AAGGATACCTTACTCCCCCCAACGCC  649
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGTGGGTCCCTCAGCGTGCACTAAAGGATACCTTACTCCCCCCAACGCC  650

seq1  ACATCAGATGACCGATGATGATAGATGTTCTGAAGACCGTCTGGTTGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGATGACCGATGATGATAGATGTTCTGAAGACCGTCTGGTTGCAG  700

seq1  ACCTCATAGCCCTAGAAAAAGGCCAGAGAGGAGATTTCACAAAACAATAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATAGCCCTAGAAAAAGGCCAGAGAGGAGATTTCACAAAACAATAG  750

seq1  CTTCCTCTCTCAGTTGCACATTCTGGCCACACCCACTGCACTCTGTGCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCTCAGTTGCACATTCTGGCCACACCCACTGCACTCTGTGCCC  800

seq1  TCCCTTTCCTTTGTCTTCCTGTGTTGCACCAAGGGACAGTCCTCCCTCCG  849
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  T-CCTTTCCTTTGTCTT-CTGTGTTGCACCAAGGGACAGTCCTCCCTCCG  848

seq1  CCCCTCCTTCCACTCCCTAGAAGGTCTGCGACCTCTGGGACTCTGCTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTTCCACTCCCTAGAAGGTCTGCGACCTCTGGGACTCTGCTGTG  898

seq1  GGCTCGGAGATCCAGGCATTTCTGGTTAATG  930
      |||||||||||||| |||||||||| |||||
seq2  GGCTCGGAGATCCA-GCATTTCTGGGTAATG  928

seq1: chr18_49554051_49554590
seq2: B6Ng01-057O16.g_330_868 (reverse)

seq1  TTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAAC-AA  49
      ||||||||  | |||||||||||||||||||||||||| |||||||| ||
seq2  TTCAAAGA--TTACCAAACGAGGAGTTGGTTCTTTGAG-AAATCAACAAA  47

seq1  GATAGA-TAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATC  98
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATC  97

seq1  CTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGA  148
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAA-TAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGA  146

seq1  AGAAATCC-AAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACA  197
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCAAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACA  196

seq1  AAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGT  246

seq1  ACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCAC  296

seq1  CTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCA  346

seq1  GGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCT  396

seq1  AATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTC  446

seq1  TACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAG  496

seq1  AAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTA  540
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTA  539