BAC Information

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BAC

Clone NameB6Ng01-057P12
Chromosome18 (Build37)
Map Location 40,377,542 - 40,539,008
singlet/doubletdoublet
Overlap geneYipf5, Kctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939
Downstream geneEG225416, LOC677182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057P12.bB6Ng01-057P12.g
ACCDH879675DH879676
length9831,091
definitionDH879675|Mus musculus domesticus DNA, BAC clone: B6Ng01-057P12, 5' end.DH879676|Mus musculus domesticus DNA, BAC clone: B6Ng01-057P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,538,033 - 40,539,008)(40,377,542 - 40,378,639)
sequence
gaattcttgtgtaagcgcacttgtattctttggtgttttggggatagaat
ctttctaactaagcggatttacaacgattctcctgtcatagcctcccaag
tactgggactacagatacatgccaccacacagggctaactgaatactttt
aagttaaaataaaaatcttttcagagtaactaaagaagtagcttcagaga
caagaactagggaactagggtaggcttttggtttatacacatccagatct
gctcaatggtggttgtcaactgtggggtttctcctaagaaaggttgaggt
gactgctttagtaatacttaaaatgccactgtccactgcccatcacctag
tgctagagacagtcatgctcttcatagcacaaatcttcccatcacgactg
ttcatactgtgcagaatctttgggccttaaaaatatcatggtccattaga
aactcagaaggacagccacaaacacagaacaacgaccaataaacaccgag
agttgaacattaaacaacctttaaggctgccatgttgtttagagcaaacc
tatcattgatcaattttcagttttttataagtctcaactgaatgaaaaag
cagcagtcagggaaggataagaaggtgagagtaaggcatgaatgtaggca
caattgtgatgcgattaacccaccgggcctttggcatgaagtgcttaaga
tttaactgcacttcctgttctcactgtgcacatctgtgcttccacaggtc
tattgagagaagttcatgtggccagaaaggtattcacgaggtaaaggact
tatcacacaggctggtaacctgcatttcttcctcagatctcacattatgg
tggaaggagagagccacttccagaagttgtcctctgatcaccatccactg
gctgtggcgtacatgctccataaataggcatgcacatgtgcgcatgtaca
tgcatgcggcacccagacacgcactaggtatat
gaattcaagatctatagatgtacacagatgacatctaaattgtaccaagt
tatgtgcttgctagtattggcatgtatgagtgtatccacacatttctggg
aaatgggcccattgtttctgtgagagtctcagaaagattaaagagcatca
ggaaaaggggtaagcacatgaaaactcctccactctagggagcgaccact
aagatctgtcccatcattctaggagactaaagacataatgtgaaagagac
tgactgaaaactttcaaactaccccaaacaccagatagtatagatgatct
tattttttttaacagttcagaccctaagattttttgaattctctttttca
gcccaaaactgataacttctctagtactaaccataatacttcagcatgag
gagtaataaagattatcaatagtcctatcagtcaccagatgactcataat
ggtgagcttacactgctaacccatgtcactgagctctttaaatatctgct
gattcaaataagctatcgaataacttttaattttcttgtgaataaatagc
cttatattctaggtagctgaagcacccatccagactatttgtaaatatta
tttcaacaaggtacttttttttgacacattagaagattttttttttttca
ggaaataaatcataagcagggcaaccccttcaaactaaaaccaaatgtct
tctctctctagaccaggataaatgacactaaatcgcattcctgaacagga
ataagttcatatattcttttttttttttttttttaaggcagagccgggca
tccagaacacactcgttcgtgaattacagactaagtaggttgtcaaagtt
gaaaagttacttgctgtagggtcctccacttcctccaatagtcataggac
tgctgagaatgctcgtcgaggctgtaactcgtctgggtagaaaccgctgt
tttagttatcaagctgaattgccaacgatctgcagaggaagagagatgga
tggcaagcactgtcttactttggatgcaagtctttgcttatgcacaccct
ccgccgggaaccccgtcccgtctggggtggtctgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_40538033_40539008
seq2: B6Ng01-057P12.b_42_1011 (reverse)

seq1  GTGTCTGTGTGTGTGCATGCATGTACATGCGCACATGTGCATGGCATATT  50
      ||||||| |||   |||||||||||||||||||||||||||| || ||||
seq2  GTGTCTGGGTG-CCGCATGCATGTACATGCGCACATGTGCAT-GCCTATT  48

seq1  TATGGAGCATGTACGCCACAGCCAGTGGATGGTGATCAGAGGACAACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGCATGTACGCCACAGCCAGTGGATGGTGATCAGAGGACAACTTC  98

seq1  GTGGAGTTGGCTCTCTCCTTCCACCCTTATGTGAGTTCTGAGGAAGAAAT  150
       ||||  |||||||||||||||||| | ||||||| ||||||||||||||
seq2  -TGGAAGTGGCTCTCTCCTTCCACCATAATGTGAGATCTGAGGAAGAAAT  147

seq1  GCAGGTTACCAGGCTTGTGTGATAAGTACCTTTACCTCCTGAATCACCTT  200
      ||||||||||| || |||||||||||| |||||||||| ||||| |||||
seq2  GCAGGTTACCA-GCCTGTGTGATAAGT-CCTTTACCTCGTGAAT-ACCTT  194

seq1  TCTGGCCACATGAACTTCTCTCAATAGACCTGTGGAAGCACAGATGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCACATGAACTTCTCTCAATAGACCTGTGGAAGCACAGATGTGCA  244

seq1  CAGTGAGAACAGGAAGTGCAGTTAAATCTTAAGCACTTCATGCCAAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAACAGGAAGTGCAGTTAAATCTTAAGCACTTCATGCCAAAGGC  294

seq1  CCGGTGGGTTAATCGCATCACAATTGTGCCTACATTCATGCCTTACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGGGTTAATCGCATCACAATTGTGCCTACATTCATGCCTTACTCTC  344

seq1  ACCTTCTTATCCTTCCCTGACTGCTGCTTTTTCATTCAGCTGAGACTTAT  400
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCTTCTTATCCTTCCCTGACTGCTGCTTTTTCATTCAGTTGAGACTTAT  394

seq1  AAAAAACTGAAAATTGATCAATGATAGGTTTGCTCTAAACAACATGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTGAAAATTGATCAATGATAGGTTTGCTCTAAACAACATGGCAG  444

seq1  CCTTAAAGGTTGTTTAATGTTCAACTCTCGGTGTTTATTGGTCGTTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGGTTGTTTAATGTTCAACTCTCGGTGTTTATTGGTCGTTGTTC  494

seq1  TGTGTTTGTGGCTGTCCTTCTGAGTTTCTAATGGACCATGATATTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTGGCTGTCCTTCTGAGTTTCTAATGGACCATGATATTTTTAA  544

seq1  GGCACAAAGATTCTGCACAGTATGAACAGTCGTGATGGGAAGATCTGTGC  600
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCCCAAAGATTCTGCACAGTATGAACAGTCGTGATGGGAAGATTTGTGC  594

seq1  TATGAAGAGCATGACTGTCTCTAGCACTAGGTGATGGGCAGTGGACAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGAGCATGACTGTCTCTAGCACTAGGTGATGGGCAGTGGACAGTG  644

seq1  GCATTTTAAGTATTACTAAAGCAGTCACCTCAACCTTTCTTAGGAGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTAAGTATTACTAAAGCAGTCACCTCAACCTTTCTTAGGAGAAAC  694

seq1  CCCACAGTTGACAACCACCATTGAGCAGATCTGGATGTGTATAAACCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTTGACAACCACCATTGAGCAGATCTGGATGTGTATAAACCAAA  744

seq1  AGCCTACCCTAGTTCCCTAGTTCTTGTCTCTGAAGCTACTTCTTTAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACCCTAGTTCCCTAGTTCTTGTCTCTGAAGCTACTTCTTTAGTTA  794

seq1  CTCTGAAAAGATTTTTATTTTAACTTAAAAGTATTCAGTTAGCCCTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAAGATTTTTATTTTAACTTAAAAGTATTCAGTTAGCCCTGTGT  844

seq1  GGTGGCATGTATCTGTAGTCCCAGTACTTGGGAGGCTATGACAGGAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCATGTATCTGTAGTCCCAGTACTTGGGAGGCTATGACAGGAGAAT  894

seq1  CGTTGTAAATCTGCTTAGTTAGAAAGATTCTATCCCCAAAACACCAAAGA  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTAAATCCGCTTAGTTAGAAAGATTCTATCCCCAAAACACCAAAGA  944

seq1  ATAAAAGTGCGCTTACACAAGAATTC  976
      ||| ||||||||||||||||||||||
seq2  ATACAAGTGCGCTTACACAAGAATTC  970

seq1: chr18_40377542_40378639
seq2: B6Ng01-057P12.g_70_1160

seq1  GAATTCAAGATCTATAGATGTACACAGATGACATCTAAATTGTACCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATCTATAGATGTACACAGATGACATCTAAATTGTACCAAGT  50

seq1  TATGTGCTTGCTAGTATTGGCATGTATGAGTGTATCCACACATTTCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTTGCTAGTATTGGCATGTATGAGTGTATCCACACATTTCTGGG  100

seq1  AAATGGGCCCATTGTTTCTGTGAGAGTCTCAGAAAGATTAAAGAGCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCCCATTGTTTCTGTGAGAGTCTCAGAAAGATTAAAGAGCATCA  150

seq1  GGAAAAGGGGTAAGCACATGAAAACTCCTCCACTCTAGGGAGCGACCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGGGTAAGCACATGAAAACTCCTCCACTCTAGGGAGCGACCACT  200

seq1  AAGATCTGTCCCATCATTCTAGGAGACTAAAGACATAATGTGAAAGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGTCCCATCATTCTAGGAGACTAAAGACATAATGTGAAAGAGAC  250

seq1  TGACTGAAAACTTTCAAACTACCCCAAACACCAGATAGTATAGATGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAAACTTTCAAACTACCCCAAACACCAGATAGTATAGATGATCT  300

seq1  TATTTTTTTTAACAGTTCAGACCCTAAGATTTTTTGAATTCTCTTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTAACAGTTCAGACCCTAAGATTTTTTGAATTCTCTTTTTCA  350

seq1  GCCCAAAACTGATAACTTCTCTAGTACTAACCATAATACTTCAGCATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAACTGATAACTTCTCTAGTACTAACCATAATACTTCAGCATGAG  400

seq1  GAGTAATAAAGATTATCAATAGTCCTATCAGTCACCAGATGACTCATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATAAAGATTATCAATAGTCCTATCAGTCACCAGATGACTCATAAT  450

seq1  GGTGAGCTTACACTGCTAACCCATGTCACTGAGCTCTTTAAATATCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCTTACACTGCTAACCCATGTCACTGAGCTCTTTAAATATCTGCT  500

seq1  GATTCAAATAAGCTATCGAATAACTTTTAATTTTCTTGTGAATAAATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAATAAGCTATCGAATAACTTTTAATTTTCTTGTGAATAAATAGC  550

seq1  CTTATATTCTAGGTAGCTGAAGCACCCATCCAGACTATTTGTAAATATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTCTAGGTAGCTGAAGCACCCATCCAGACTATTTGTAAATATTA  600

seq1  TTTCAACAAGGTACTTTTTTTTGACACATTAGAAGA-TTTTTCTTTTTCA  649
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  TTTCAACAAGGTACTTTTTTTTGACACATTAGAAGATTTTTTTTTTTTCA  650

seq1  GGAAATAAATCATAAGCAGGGCAACCCCTTCAAACTAAAACCAAATGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAATCATAAGCAGGGCAACCCCTTCAAACTAAAACCAAATGTCT  700

seq1  TCTCTCTCTAGACCAGGATAAATGACACTAAATCGCATTCCTGAACAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTAGACCAGGATAAATGACACTAAATCGCATTCCTGAACAGGA  750

seq1  ATAAGTTCATATATTC-TTTTTTTTTTTTTTTTTAAGGCAGAGCCGGGCA  798
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATAAGTTCATATATTCTTTTTTTTTTTTTTTTTTAAGGCAGAGCCGGGCA  800

seq1  TCCAGAACACACTCGTTCGTGAATTACAGACTAAGTAGGTTGTCAAAGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACACACTCGTTCGTGAATTACAGACTAAGTAGGTTGTCAAAGTT  850

seq1  GAAAAGTTACTTGCTGTAGGGTCCTCCACTTCCTCC-ATAGTCATAGGAC  897
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAAAGTTACTTGCTGTAGGGTCCTCCACTTCCTCCAATAGTCATAGGAC  900

seq1  TGCTGAGATTGCTCGTCGATGCTGTAACTCGTCT-GGTAGAAACCGCTGT  946
      |||||||| |||||||||| |||||||||||||| |||||||||||||||
seq2  TGCTGAGAATGCTCGTCGAGGCTGTAACTCGTCTGGGTAGAAACCGCTGT  950

seq1  TTAAGTTATCAAAGCCTGACATTGCCAACGATCTGCAAGAGAAGAGAGAT  996
      || |||||||||   |||| |||||||||||||||||   ||||||||||
seq2  TTTAGTTATCAA--GCTGA-ATTGCCAACGATCTGCAGAGGAAGAGAGAT  997

seq1  GGATGGCAAGCACTGTC-TACCTTGGATGGCAAGGTCCTTTGCTTATGCA  1045
      ||||||||||||||||| ||| |||||| |||||   |||||||||||| 
seq2  GGATGGCAAGCACTGTCTTACTTTGGAT-GCAAG--TCTTTGCTTATGC-  1043

seq1  AACACCCTCCGCCGGGAACCGCAGTCCGCATCTGGGGGTGGTCTGGGGTG  1095
       ||||||||||||||||||| | |||| | ||| |||||||||||||| |
seq2  -ACACCCTCCGCCGGGAACC-CCGTCC-CGTCT-GGGGTGGTCTGGGGGG  1089

seq1  GGG  1098
      || 
seq2  GG-  1091