BAC Information

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BAC

Clone NameB6Ng01-059C22
Chromosome18 (Build37)
Map Location 57,621,147 - 57,719,212
singlet/doubletdoublet
Overlap gene1700011I03Rik, 4930511M06Rik
Upstream geneGramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1
Downstream gene2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2, Slc27a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059C22.bB6Ng01-059C22.g
ACCDH880539DH880540
length1,0841,130
definitionDH880539|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C22, 5' end.DH880540|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,621,147 - 57,622,257)(57,718,068 - 57,719,212)
sequence
gaattctctcctatcaagttgcattgatttttgtggacttaaaagttaga
caacttattccccaagcaaccactgactcagaattagactcagtttggaa
cgatctagatactgctcatgtatcactttttttttttttttttgattatt
cgagacagggtttctctgtatagccctggctgtcctaggactcactttgt
agaccaggctggcttcgaactcagaattccacctgcctctgtctcccaag
tgctgggattagtcgtgtatcacttttactcaaaagaaacttcagctttc
atattgtgagggctgggtagtgacattacagtgtgtccaggggaattgga
gaggatggagaggaagtaaagacttgatggtggattggaggaggctcaag
gatgctgggatggcagttagactaaaggagtactttaaggggcattatta
gagatgggcactatgtagtgagtgaaactcttgtcaaatgcaggggtaga
ctatgtgactatattcagcagtgatccatgttcctgctttctaggaaaga
gtggtaatttttccatttcattcaggtagggtctcaagtcttgctgtgtt
ggatacagtctgaactattatgggggaatcttctcatttctatctgtact
catatctggtaatgtccagcgtctccatctgtctgtcaggataaggatgg
tgatgagccaggagcagggtctccaaatggccttcaaggagcacaaggca
agagaggagactgtggctattttctgccactaagagtttctttttaaatc
acagacttgtgcagcttatgtagtttgatacagataaagattgctggtta
gaagttagtaataacagttacgcctccttagatttttttttttttactat
gacaggcaagtatgacaatgatgtgcagaggggaaaatgggagaaaatcc
aattacagggttcatttagagatcataactgagagtggaggctgcagaaa
cgttgccacctctcctaaaacattaccactgatggaaaaatgataagagg
cagtctttattcttgtcatttatagctactggga
gaattcagtaaaagggaacacttgcacactacagaggagcgtgaatgagc
tcagacgctgtggaagtcagcatcattctatccgcctataccattctggg
gtattgtaatcaaagggttccaggtcagcatcccatagagatacctgcac
atccatgtttatcacaatgatgttcacaatagccaagctagaatcagcct
agctgcccatcgatggatggacagacaaacaaagtgtggcatatatacac
ggtggggttttgtttagccataaagaagaatgaaattccataagcaggaa
aatggagatcattatgtcatgtcacatgtcagtctcacaaagtgcggcat
gatttatcttgtacgtggaggaaggaggggagacctgaatgtaaggggga
cattaggatttgaacgggaaaggaaaggagaatagggtaatagaggggat
gcatgtatcgaagtacattataagcaagcatggaaatgagtttttaaaaa
ggagatgattacatggcatcacagtgcaaaagcacaggtgataatactgt
gtttaaatatgactgattcctcaagggataaactctaataactcaataat
tcctatttgtaacttttaactttaggtctcttaaatgtttctccatgaat
gttaagtcaatcccgatacatatagttcaaatgatcaaactaaaatacta
gtaaataattttaatcatacagatattctttgattacagtaaagatgcca
aactgtatataggtgaatatgtatttagactgatagctttattaatgaaa
caaacataaaaaacataagcaccaacttgcttttagctgtataagtttct
cattcgagagtttataggaaaacttaccactttccttattgacttatttt
accccttaatgtctctaatctatccgtgctcattctttgtatcctttctc
tagtgcctttatttctgtgtcctagatgactaactcatctgtttccagcc
attaaacgtctcaaccttgagagctagttcaggtcactgatgtaatgact
tgatgttctatcctagaacctgtggtgcaagttacattggactctgctga
gctcctgattgagcaataaatactgttgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_57621147_57622257
seq2: B6Ng01-059C22.b_47_1130

seq1  GAATTCTCTCCTATCAAGTTGCATTGATTTTTGTGGACTTAAAAGTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTATCAAGTTGCATTGATTTTTGTGGACTTAAAAGTTAGA  50

seq1  CAACTTATTCCCCAAGCAACCACTGACTCAGAATTAGACTCAGTTTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATTCCCCAAGCAACCACTGACTCAGAATTAGACTCAGTTTGGAA  100

seq1  CGATCTAGATACTGCTCATGTATCACTTTTTTTTTTTTTTTTTGATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTAGATACTGCTCATGTATCACTTTTTTTTTTTTTTTTTGATTATT  150

seq1  CGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTAGGACTCACTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTAGGACTCACTTTGT  200

seq1  AGACCAGGCTGGCTTCGAACTCAGAATTCCACCTGCCTCTGTCTCCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCTTCGAACTCAGAATTCCACCTGCCTCTGTCTCCCAAG  250

seq1  TGCTGGGATTAGTCGTGTATCACTTTTACTCAAAAGAAACTTCAGCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAGTCGTGTATCACTTTTACTCAAAAGAAACTTCAGCTTTC  300

seq1  ATATTGTGAGGGCTGGGTAGTGACATTACAGTGTGTCCAGGGGAATTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGAGGGCTGGGTAGTGACATTACAGTGTGTCCAGGGGAATTGGA  350

seq1  GAGGATGGAGAGGAAGTAAAGACTTGATGGTGGATTGGAGGAGGCTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGGAGAGGAAGTAAAGACTTGATGGTGGATTGGAGGAGGCTCAAG  400

seq1  GATGCTGGGATGGCAGTTAGACTAAAGGAGTACTTTAAGGGGCATTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGGATGGCAGTTAGACTAAAGGAGTACTTTAAGGGGCATTATTA  450

seq1  GAGATGGGCACTATGTAGTGAGTGAAACTCTTGTCAAATGCAGGGGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGGCACTATGTAGTGAGTGAAACTCTTGTCAAATGCAGGGGTAGA  500

seq1  CTATGTGACTATATTCAGCAGTGATCCATGTTCCTGCTTTCTAGGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGACTATATTCAGCAGTGATCCATGTTCCTGCTTTCTAGGAAAGA  550

seq1  GTGGTAATTTTTCCATTTCATTCAGGTAGGGTCTCAAGTCTTGCTGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAATTTTTCCATTTCATTCAGGTAGGGTCTCAAGTCTTGCTGTGTT  600

seq1  GGATACAGTCTGAACTATTATGGGGGAATCTTCTCATTTCTATCTGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGTCTGAACTATTATGGGGGAATCTTCTCATTTCTATCTGTACT  650

seq1  CATATCTGGTAATGTCCAGCGTCTCCATCTGTCTGTCAGGATAAGGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGGTAATGTCCAGCGTCTCCATCTGTCTGTCAGGATAAGGATGG  700

seq1  TGATGAGCCAGGAGCAGGGTCTCCAAATGGCCTTCAAGGAGCACAAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGCCAGGAGCAGGGTCTCCAAATGGCCTTCAAGGAGCACAAGGCA  750

seq1  AGAGAGGAGACTGTGGCTATTTTCTGCCACTAAGAGTTTCTTTTTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAGAGGAGACTGTGGCTATTTTCTGCCACTAAGAGTTTCTTTTT-AAAT  799

seq1  CACAGACTTGTGCAGCTTATGTAGTTTGATACAGATAAAGATTGCTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTTGTGCAGCTTATGTAGTTTGATACAGATAAAGATTGCTGGTT  849

seq1  AGAAGTTAGTAATTAACAGTTACGCCTCCTTAGATTTTTTTTTTTTTACT  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTAGTAA-TAACAGTTACGCCTCCTTAGATTTTTTTTTTTTTACT  898

seq1  ATGACAGGCAAAGTATGACAATGATGTTGCAAGAGGGGGAAAATGGGAGA  950
      ||||||||| |||||||||||||||| ||| ||| |||||||||||||||
seq2  ATGACAGGC-AAGTATGACAATGATG-TGC-AGA-GGGGAAAATGGGAGA  944

seq1  AAATCCAATTACAGGGTTCATTTAGGAGAATTCATAACTGAGAGTGGAGG  1000
      |||||||||||||||||||||||| ||||  |||||||||||||||||||
seq2  AAATCCAATTACAGGGTTCATTTA-GAGA--TCATAACTGAGAGTGGAGG  991

seq1  CTGCAGATACGTTTGCCACCTCTCCTAAAACCATTACCACTGAAATGAAA  1050
      ||||||| ||| |||||||||||||||||| |||||||||||  ||| ||
seq2  CTGCAGAAACG-TTGCCACCTCTCCTAAAA-CATTACCACTG--ATGGAA  1037

seq1  AAATAGATTAACAGGAGGCCCAAGTCTTTTATTCTTGTTCATTTTTATAG  1100
      |||| |||    | |||||   |||| |||||||||| |||  |||||||
seq2  AAAT-GAT----AAGAGGC---AGTC-TTTATTCTTG-TCA--TTTATAG  1075

seq1  CCAAACTGGGA  1111
      |   |||||||
seq2  C--TACTGGGA  1084

seq1: chr18_57718068_57719212
seq2: B6Ng01-059C22.g_67_1196 (reverse)

seq1  GTCAACAGCTATTTATTTGGCTTCAATCAGGAGCTCAGCAGAGTCCTATG  50
      |||||||| ||||||||  || |||||||||||||||||||||||| |||
seq2  GTCAACAG-TATTTATT--GC-TCAATCAGGAGCTCAGCAGAGTCCAATG  46

seq1  TGACCTCTGCACACACAGTGTTCTAGGAGTAGAACATCAAGTCTATTACA  100
      | ||   ||||| ||||| ||||||||| |||||||||||||| ||||||
seq2  TAAC--TTGCAC-CACAG-GTTCTAGGA-TAGAACATCAAGTC-ATTACA  90

seq1  TCAGTGACCTTGAACTAGCTCTCAAAGTTTGAAGACGTTTAATGGCT-GA  149
      ||||||||| ||||||||||||||| |||   ||||||||||||||| ||
seq2  TCAGTGACC-TGAACTAGCTCTCAAGGTT--GAGACGTTTAATGGCTGGA  137

seq1  CACAGATGAGTTAAGTCATCTAAGGACACAGAAATAAAGGCACTAAGAGA  199
       ||||||||||| |||||||| |||||||||||||||||||||| |||||
seq2  AACAGATGAGTT-AGTCATCT-AGGACACAGAAATAAAGGCACT-AGAGA  184

seq1  AAGGATACAAAGAATGAGCACGGATAGATTAGAGACATTAAGGGGTAAAA  249
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGGATACAAAGAATGAGCACGGATAGATTAGAGACATTAAGGGGT-AAA  233

seq1  ATAAGTCAATAAGGAAAGTGGTAAGTTTTCCTATAAACTCTCGAATGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCAATAAGGAAAGTGGTAAGTTTTCCTATAAACTCTCGAATGAGA  283

seq1  AACTTATACAGCTAAAAGCAAGTTGGTGCTTATGTTTTTTATGTTTGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATACAGCTAAAAGCAAGTTGGTGCTTATGTTTTTTATGTTTGTTT  333

seq1  CATTAAT-AAGCTATCAGTCTAAATACATATTCACCTATATACAGTTTGG  398
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAAAGCTATCAGTCTAAATACATATTCACCTATATACAGTTTGG  383

seq1  CATCTTTACTGTAATCAAAGAATATCTGTATGATTAAAATTATTTACTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTACTGTAATCAAAGAATATCTGTATGATTAAAATTATTTACTAG  433

seq1  TATTTTAGTTTGATCATTTGAACTATATGTATCGGGATTGACTTAACATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGTTTGATCATTTGAACTATATGTATCGGGATTGACTTAACATT  483

seq1  CATGGAGAAACATTTAAGAGACCTAAAGTTAAAAGTTACAAATAGGAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGAAACATTTAAGAGACCTAAAGTTAAAAGTTACAAATAGGAATT  533

seq1  ATTGAGTTATTAGAGTTTATCCCTTGAGGAATCAGTCATATTTAAACACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTATTAGAGTTTATCCCTTGAGGAATCAGTCATATTTAAACACA  583

seq1  GTATTATCACCTGTGCTTTTGCACTGTGATGCCATGTAATCATCTCCTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCACCTGTGCTTTTGCACTGTGATGCCATGTAATCATCTCCTTT  633

seq1  TTAAAAACTCATTTCCATGCTTGCTTATAATGTACTTCGATACATGCATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACTCATTTCCATGCTTGCTTATAATGTACTTCGATACATGCATC  683

seq1  CCCTCTATTACCCTATTCTCCTTTCCTTTCCCGTTCAAATCCTAATGTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTATTACCCTATTCTCCTTTCCTTTCCCGTTCAAATCCTAATGTCC  733

seq1  CCCTTACATTCAGGTCTCCCCTCCTTCCTCCACGTACAAGATAAATCATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACATTCAGGTCTCCCCTCCTTCCTCCACGTACAAGATAAATCATG  783

seq1  CCGCACTTTGTGAGACTGACATGTGACATGACATAATGATCTCCATTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACTTTGTGAGACTGACATGTGACATGACATAATGATCTCCATTTTC  833

seq1  CTGCTTATGGAATTTCATTCTTCTTTATGGCTAAACAAAACCCCACCGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATGGAATTTCATTCTTCTTTATGGCTAAACAAAACCCCACCGTG  883

seq1  TATATATGCCACACTTTGTTTGTCTGTCCATCCATCGATGGGCAGCTAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGCCACACTTTGTTTGTCTGTCCATCCATCGATGGGCAGCTAGG  933

seq1  CTGATTCTAGCTTGGCTATTGTGAACATCATTGTGATAAACATGGATGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTAGCTTGGCTATTGTGAACATCATTGTGATAAACATGGATGTG  983

seq1  CAGGTATCTCTATGGGATGCTGACCTGGAACCCTTTGATTACAATACCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATCTCTATGGGATGCTGACCTGGAACCCTTTGATTACAATACCCC  1033

seq1  AGAATGGTATAGGCGGATAGAATGATGCTGACTTCCACAGCGTCTGAGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTATAGGCGGATAGAATGATGCTGACTTCCACAGCGTCTGAGCT  1083

seq1  CATTCACGCTCCTCTGTAGTGTGCAAGTGTTCCCTTTTACTGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACGCTCCTCTGTAGTGTGCAAGTGTTCCCTTTTACTGAATTC  1130