BAC Information

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BAC

Clone NameB6Ng01-060A09
Chromosome18 (Build37)
Map Location 47,309,516 - 47,434,513
singlet/doubletdoublet
Overlap geneLOC667120, Sema6a
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438
Downstream geneLOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060A09.bB6Ng01-060A09.g
ACCDH881127DH881128
length1,1261,026
definitionDH881127|Mus musculus domesticus DNA, BAC clone: B6Ng01-060A09, 5' end.DH881128|Mus musculus domesticus DNA, BAC clone: B6Ng01-060A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,309,516 - 47,310,652)(47,433,472 - 47,434,513)
sequence
gaattccacgtggtgcatctggtacctatttgcctggggaagggcaggag
cagggtggttaattgaatgcttggcacagggcagcaagaagtaaagagag
agaagaagcaggctgcgagtgcttagagaacagggttggtcgcagcctcg
cacagcacccgagctccacgagttttgctgctctggttggttcctgtcca
gaaacagagccttgaaaggggcccaagggcaggactttgatgtgtctgca
actcattgccatttctgctttgctctgagtcccaaagtgccccactttct
cctatggctatttgcaggtggccagggtgtggacagcagagaagccaagg
acagaaaagaccacctgcagctgctctgttgcccacctaatttggacgca
gcctttaatcctgcaacaagaactctggctccagacactggtttagttcc
aagataccaaacagaagtaaaagtgaagtagaacctacttggaatccatt
tctggctggggctcaggctagctcagcctaaggaactctctctgcctact
tgtctttctggctttctgtgcctctggcattgaaaggtcaccagagcatg
cttcctcctccccaagacagaaatggtttggatttcagatctcagctcct
gaaagctgttgtgtcatcttctaagggcctgttgttgcttttggaacctc
agtttccccatctgtaaagtgggatgattcagacagttccaagtaaaaaa
tgaaatgattgaaaacacaaggcagagacaggcagatttctgagttcgag
gccagtctggtctacaaagtgagttccaggacagccaggactatacagag
aacctgtctcgaaaaaaaaaaaaaaaaaaagaaagaaagaaatgaaaaca
caagtcagccctgggcttcgagatactcatggcagcctaggaggaaggcc
gtttggagcaactctcattcccaccctttcttggggaggcatggagacat
ttagagtttagtgatctatgatgggtttccagccaactatggtagaagtg
acagatttcagcaccatggcggagcttgccactgcccatggcttttcttt
agtaaagtaggtcctggtgatgttat
gaattccttgaacatataattaaactccgggatgctctttctggacagaa
atcactctgcaggcaagtttggagctttcatttcctcctcaaaggacagg
catttattaatttttccatacgttaatggggatatgttacaattaaagct
tgaaaggacaatgcccagttcttgtgagctcttgatctggagtttctgga
aggaaatcagagaagaatggggcttcccctttagctcataaccctgtcca
ctgcaggtaggaactattcaacccgcagtagttagatggcaaaaatttac
catcaaaatcagtgatgggctaccacagaggtcaggaaattactaaagag
ccttagaaagatactttcaaaggagggaaaacataatatatttttaaggg
gaaaaagagagagagagatatgctgtagatagtacttatctagtacttgg
tatgaactaataaaatatttaattcattgagcatatacttgttgagtggc
tgctgtgggtcaggcatggtgtatgtgcaggatttgtatccctagaggga
ggaccaaattgctacgtttatgggtgtgaatacagatgagcaagacagtc
cagagtgcacctctgtgtcttctgtatgtcctgagctttgcagctatttt
aggcccacaaaacaaaccaccaaaatgggattaccttttttttttttttt
cagagaaaggcgtcattttagtctagcactgtgtaagctttgtgttggct
aaagctgtaggcagcaccagtcacatcctacaagaacgcctttagtgaat
tgggccctgattgtttttcctctctctttcctctctgtattgagttagtg
tctctatgtctaatcggctaacatcattgttaacagtagaatagcgggag
ggtctctaacttgaagactcacgtgtcttgtagtatgaagagaatcacac
gatgcatgaaattactttgaaaaatctaagttttgatcttgaagacttaa
tagcatcattcactgttcaaatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_47309516_47310652
seq2: B6Ng01-060A09.b_45_1170

seq1  GAATTCCACGTGGTGCATCTGGTACCTATTTGCCTGGGGAAGGGCAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGTGGTGCATCTGGTACCTATTTGCCTGGGGAAGGGCAGGAG  50

seq1  CAGGGTGGTTAATTGAATGCTTGGCACAGGGCAGCAAGAAGTAAAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGTTAATTGAATGCTTGGCACAGGGCAGCAAGAAGTAAAGAGAG  100

seq1  AGAAGAAGCAGGCTGCGAGTGCTTAGAGAACAGGGTTGGTCGCAGCCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGCAGGCTGCGAGTGCTTAGAGAACAGGGTTGGTCGCAGCCTCG  150

seq1  CACAGCACCCGAGCTCCACGAGTTTTGCTGCTCTGGTTGGTTCCTGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACCCGAGCTCCACGAGTTTTGCTGCTCTGGTTGGTTCCTGTCCA  200

seq1  GAAACAGAGCCTTGAAAGGGGCCCAAGGGCAGGACTTTGATGTGTCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAGCCTTGAAAGGGGCCCAAGGGCAGGACTTTGATGTGTCTGCA  250

seq1  ACTCATTGCCATTTCTGCTTTGCTCTGAGTCCCAAAGTGCCCCACTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTGCCATTTCTGCTTTGCTCTGAGTCCCAAAGTGCCCCACTTTCT  300

seq1  CCTATGGCTATTTGCAGGTGGCCAGGGTGTGGACAGCAGAGAAGCCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGCTATTTGCAGGTGGCCAGGGTGTGGACAGCAGAGAAGCCAAGG  350

seq1  ACAGAAAAGACCACCTGCAGCTGCTCTGTTGCCCACCTAATTTGGACGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGACCACCTGCAGCTGCTCTGTTGCCCACCTAATTTGGACGCA  400

seq1  GCCTTTAATCCTGCAACAAGAACTCTGGCTCCAGACACTGGTTTAGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCTGCAACAAGAACTCTGGCTCCAGACACTGGTTTAGTTCC  450

seq1  AAGATACCAAACAGAAGTAAAAGTGAAGTAGAACCTACTTGGAATCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACCAAACAGAAGTAAAAGTGAAGTAGAACCTACTTGGAATCCATT  500

seq1  TCTGGCTGGGGCTCAGGCTAGCTCAGCCTAAGGAACTCTCTCTGCCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGGGGCTCAGGCTAGCTCAGCCTAAGGAACTCTCTCTGCCTACT  550

seq1  TGTCTTTCTGGCTTTCTGTGCCTCTGGCATTGAAAGGTCACCAGAGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTGGCTTTCTGTGCCTCTGGCATTGAAAGGTCACCAGAGCATG  600

seq1  CTTCCTCCTCCCCAAGACAGAAATGGTTTGGATTTCAGATCTCAGCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTCCCCAAGACAGAAATGGTTTGGATTTCAGATCTCAGCTCCT  650

seq1  GAAAGCTGTTGTGTCATCTTCTAAGGGCCTGTTGTTGCTTTTGGAACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGTTGTGTCATCTTCTAAGGGCCTGTTGTTGCTTTTGGAACCTC  700

seq1  AGTTTCCCCATCTGTAAAGTGGGATGATTCAGACAGTTCCAAGTAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCCCATCTGTAAAGTGGGATGATTCAGACAGTTCCAAGTAAAAAA  750

seq1  TGAAATGATTGAAAACACAAGGCAGAGACAGGCAGATTTCTGAGTTCGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGATTGAAAACACAAGGCAGAGACAGGCAGATTTCTGAGTTCGAG  800

seq1  GCCAGTCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGACTATACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGACTATACAGAG  850

seq1  AACCTGTCTCGAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAATGAAAA  900
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AACCTGTCTCG--AAAAAAAAAAAAAAAAAAAGAAAGAAAGAAATGAAAA  898

seq1  CACAAGTCAGCCCTGGGCCTTCGTAGATACTCATGGCAGCCTAGGAGGAA  950
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  CACAAGTCAGCCCTGGG-CTTCG-AGATACTCATGGCAGCCTAGGAGGAA  946

seq1  GGCCGTTTGGAGCAACATCTCCATCCCCAGCCTTTCCTTGGGGAGGCATG  1000
      |||||||||||||||| ||| ||| |||| ||||| ||||||||||||||
seq2  GGCCGTTTGGAGCAAC-TCT-CATTCCCACCCTTT-CTTGGGGAGGCATG  993

seq1  GAGACATTTAGAGTTTAGTGATCTATGATGGTCTCACAGCCAACTATGGT  1050
      |||||||||||||||||||||||||||||||  |  ||||||||||||||
seq2  GAGACATTTAGAGTTTAGTGATCTATGATGGGTTTCCAGCCAACTATGGT  1043

seq1  AGAAGTGACAAGATTCCAGGCACATGGCGGAGCCTGTGCCACCTGCCCAT  1100
      ||||||||| ||||| |||   |||||||||||   ||||| ||||||||
seq2  AGAAGTGAC-AGATTTCAGCACCATGGCGGAGC--TTGCCA-CTGCCCAT  1089

seq1  -GCTTTTCTTTTAGTAAAGTAGGCCCTGCTGATGTTAT  1137
       ||||||| |||||||||||||| |||| |||||||||
seq2  GGCTTTTC-TTTAGTAAAGTAGGTCCTGGTGATGTTAT  1126

seq1: chr18_47433472_47434513
seq2: B6Ng01-060A09.g_70_1095 (reverse)

seq1  ACACATTTTGAACAGTGGAATGGATGCTATTATAGTCTTCACAGATCCAA  50
      ||||| |||||||||| |||| |||||||||| |||||||| |||||  |
seq2  ACACA-TTTGAACAGT-GAAT-GATGCTATTA-AGTCTTCA-AGATC--A  43

seq1  AAACTATAGATATTTTCAAAAAGTTAATTTTCATGCATCGTGTGGTTTCT  100
      ||||| ||||| |||||  |||||  | ||||||||||||||| | ||||
seq2  AAACT-TAGAT-TTTTC--AAAGT--AATTTCATGCATCGTGT-GATTCT  86

seq1  CTACAT-CTACAAGACACTGTGAGTCTACAGGTTAGAGACCCTTCCCGCT  149
      || ||| ||||||||||| |||||||| || ||||||||||| |||||||
seq2  CTTCATACTACAAGACAC-GTGAGTCTTCAAGTTAGAGACCC-TCCCGCT  134

seq1  ATTCTTACTGTTAACAATGATTGTAGCCGATTAGACATAAGAGACACTAA  199
      |||| ||||||||||||||||  ||||||||||||||| |||||||||||
seq2  ATTC-TACTGTTAACAATGATGTTAGCCGATTAGACAT-AGAGACACTAA  182

seq1  CTCAATACAGAGAGG-AAGAGAGAGGAAAAACAATCAGGGCCCAATTCAC  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCAATACAGAGAGGAAAGAGAGAGGAAAAACAATCAGGGCCCAATTCAC  232

seq1  TAAAAGGCGTTCTTGTA-GATGTGACTGGTGCTGCCTACAGCTTTAGCCA  297
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  T-AAAGGCGTTCTTGTAGGATGTGACTGGTGCTGCCTACAGCTTTAGCCA  281

seq1  ACACAAAGCTTACACAGTGCTAGACTAAAATGACGCCTTTCTCTGAAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGCTTACACAGTGCTAGACTAAAATGACGCCTTTCTCTGAAAAA  331

seq1  AAAAAAAAAAGGTAATCCCATTTTGGTGGTTTGTTTTGTGGGCCTAAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGGTAATCCCATTTTGGTGGTTTGTTTTGTGGGCCTAAAAT  381

seq1  AGCTGCAAAGCTCAGGACATACAGAAGACACAGAGGTGCACTCTGGACTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAAAGCTCAGGACATACAGAAGACACAGAGGTGCACTCTGGACTG  431

seq1  TCTTGCTCATCTGTATTCACACCCATAAACGTAGCAATTTGGTCCTCCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCATCTGTATTCACACCCATAAACGTAGCAATTTGGTCCTCCCT  481

seq1  CTAGGGATACAAATCCTGCACATACACCATGCCTGACCCACAGCAGCCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGATACAAATCCTGCACATACACCATGCCTGACCCACAGCAGCCAC  531

seq1  TCAACAAGTATATGCTCAATGAATTAAATATTTTATTAGTTCATACCAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGTATATGCTCAATGAATTAAATATTTTATTAGTTCATACCAAG  581

seq1  TACTAGATAAGTACTATCTACAGCATATCTCTCTCTCTCTTTTTCCCCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGATAAGTACTATCTACAGCATATCTCTCTCTCTCTTTTTCCCCTT  631

seq1  AAAAATATATTATGTTTTCCCTCCTTTGAAAGTATCTTTCTAAGGCTCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATATTATGTTTTCCCTCCTTTGAAAGTATCTTTCTAAGGCTCTT  681

seq1  TAGTAATTTCCTGACCTCTGTGGTAGCCCATCACTGATTTTGATGGTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTTCCTGACCTCTGTGGTAGCCCATCACTGATTTTGATGGTAAA  731

seq1  TTTTTGCCATCTAACTACTGCGGGTTGAATAGTTCCTACCTGCAGTGGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCATCTAACTACTGCGGGTTGAATAGTTCCTACCTGCAGTGGAC  781

seq1  AGGGTTATGAGCTAAAGGGGAAGCCCCATTCTTCTCTGATTTCCTTCCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTATGAGCTAAAGGGGAAGCCCCATTCTTCTCTGATTTCCTTCCAG  831

seq1  AAACTCCAGATCAAGAGCTCACAAGAACTGGGCATTGTCCTTTCAAGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAGATCAAGAGCTCACAAGAACTGGGCATTGTCCTTTCAAGCTT  881

seq1  TAATTGTAACATATCCCCATTAACGTATGGAAAAATTAATAAATGCCTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTAACATATCCCCATTAACGTATGGAAAAATTAATAAATGCCTGT  931

seq1  CCTTTGAGGAGGAAATGAAAGCTCCAAACTTGCCTGCAGAGTGATTTCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGGAGGAAATGAAAGCTCCAAACTTGCCTGCAGAGTGATTTCTG  981

seq1  TCCAGAAAGAGCATCCCGGAGTTTAATTATATGTTCAAGGAATTC  1042
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAGAGCATCCCGGAGTTTAATTATATGTTCAAGGAATTC  1026