BAC Information

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BAC

Clone NameB6Ng01-060D17
Chromosome18 (Build37)
Map Location 69,958,269 - 70,075,656
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043380, EG225681, Tcf4
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060D17.bB6Ng01-060D17.g
ACCDH881265DH881266
length1,2271,094
definitionDH881265|Mus musculus domesticus DNA, BAC clone: B6Ng01-060D17, 5' end.DH881266|Mus musculus domesticus DNA, BAC clone: B6Ng01-060D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,958,269 - 69,959,500)(70,074,639 - 70,075,656)
sequence
gaattcactttttgacacactcacaaccaagtaatagcaaaccatgtatg
ttacacgccagtgaattttatattatgtcaaatgggagcataaaagtccg
ggactgggttcctatcctgtgggcctccatgcaaagcagaaatttagatg
cttggttgaaattattaaaaaaaatttcagaataaagatgtaactcaatt
agtgagtggcagccaaatatacacacatgcatgtgcacccaccaccacca
ccacacgcacacacaaaggctctatacactcagcactgcgtgtggtatac
acctacaatccccatcactcaggaggtagaagcagaagggccagaaattc
aagttcatcgttggttacatagacagttaaaagccagcttggtctactca
tagatcctacctcaaaaaccaaaccaaacaaaaacagcaaacaaacactc
caaaactctaatattttcaaattggtgattgacagccaaataataaccaa
ctttgggttctggtatggtaggtcccatatgtccatggtaggtcatgatg
ttttgcaaaagtcacataataatacatgaacagccaccccagtgatgtca
ctctacagaccaagtctaaattagctactcctctcctttttgctcagttc
ctatttctttaccttttagtaatgttttttttttttggtccttgacttcc
tgattcagaacaggtttccaggacatcacttgggggcatccaggctgttt
gtcttaaattctctaagcttcttacttttttgtttcactatagtgatctt
caccttcccgttatgtcaccttccagcctctgctgcctacccagtccagt
tgatctcatggtggaaatacttcttaggtctaactccttcctttgagcct
cctagtttcgagtctatcaagtctgtctgtcctcatctattttctcacta
aattcagtttccggattccctaccatcctggtcataatccatatttatct
gaagaatactgttaaggcttaaacttgcttcacatcctttgttaaggact
tgtatcgtctggtggtattaactgtgaaaaaccttctttggaaaaacaca
agatttcattttcttctgattcaatctatctgaaggcagctgcagctttc
aatcttttcatttcttaacttaagcacaagttaccctggctgcttaacaa
gataccctgctgacctactagctgctc
gaattctttgcagtggaataagaaaggaaaaatgtgtaaagataacaaag
agtaaatcctgtctccatacttagagattacatgatcgcaggcgaggaat
gttcacattaatatacaaactgtagaattaaaaagtggattcgcctgtat
tgctgtgcacctagatgacacacaagattacatttctatacaataacagt
aagttataaagtatattttttaaaaattaccatagcattagtaagcaata
aatacttatgtatcaaataacaagaacaacaaaaactctacacataggca
actattaacatgaactgtggcaaaattaagaggctatagagaaaatgttc
atagaggaaagtgctgatttgtaacacagaaggtgtgcaaccaagttacc
agttgtccttcatattgatgtctccaccttcaaagaggtcctaattaaca
tgacattttcaagacgtagagctgattataaaatgcatgtacaaatgtga
ctatctcaacagagtcgagactaacctgaataaaagtgaaccaaattgga
agataatacaaacactgaaacatcatgaaaagctgtagtaattatcttta
tacatgactcaaaaagatagacagtagtacatacttcatatgtggctcaa
agcatgtcccgccatttacttcagaaggcagaggagggtccatggcgatt
ggaaatggtgtgttcaacaccagcaccagtatcagtgactgaggagcaca
aacttgaacctagttctcacagcatgtatgtaaatgactccaggcagacc
tcagacctaaatgtaaaaagcaaagcaataacgatgctgagagttatcct
aggagggcttcatcattttgctttagaaacttgtaaagcaagataccgaa
atcacacactactatgagtaaaatgaataaatcttgtcattaaattacat
gagaagacatcagatatagtgtgagtgtactgtgtgcaatgaaatcctga
acaagagaagaacaaatacgtcttcttatacgaagcatggatgaatctca
caaagtgtacagagagaatccatctgacggtactcgcactgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69958269_69959500
seq2: B6Ng01-060D17.b_47_1273

seq1  GAATTCACTTTTTGACACACTCACAACCAAGTAATAGCAAACCATGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTTGACACACTCACAACCAAGTAATAGCAAACCATGTATG  50

seq1  TTACACGCCAGTGAATTTTATATTATGTCAAATGGGAGCATAAAAGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACGCCAGTGAATTTTATATTATGTCAAATGGGAGCATAAAAGTCCG  100

seq1  GGACTGGGTTCCTATCCTGTGGGCCTCCATGCAAAGCAGAAATTTAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGGTTCCTATCCTGTGGGCCTCCATGCAAAGCAGAAATTTAGATG  150

seq1  CTTGGTTGAAATTATTAAAAAAAATTTCAGAATAAAGATGTAACTCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTGAAATTATTAAAAAAAATTTCAGAATAAAGATGTAACTCAATT  200

seq1  AGTGAGTGGCAGCCAAATATACACACATGCATGTGCACCCACCACCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGGCAGCCAAATATACACACATGCATGTGCACCCACCACCACCA  250

seq1  CCACACGCACACACAAAGGCTCTATACACTCAGCACTGCGTGTGGTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGCACACACAAAGGCTCTATACACTCAGCACTGCGTGTGGTATAC  300

seq1  ACCTACAATCCCCATCACTCAGGAGGTAGAAGCAGAAGGGCCAGAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAATCCCCATCACTCAGGAGGTAGAAGCAGAAGGGCCAGAAATTC  350

seq1  AAGTTCATCGTTGGTTACATAGACAGTTAAAAGCCAGCTTGGTCTACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATCGTTGGTTACATAGACAGTTAAAAGCCAGCTTGGTCTACTCA  400

seq1  TAGATCCTACCTCAAAAACCAAACCAAACAAAAACAGCAAACAAACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCTACCTCAAAAACCAAACCAAACAAAAACAGCAAACAAACACTC  450

seq1  CAAAACTCTAATATTTTCAAATTGGTGATTGACAGCCAAATAATAACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCTAATATTTTCAAATTGGTGATTGACAGCCAAATAATAACCAA  500

seq1  CTTTGGGTTCTGGTATGGTAGGTCCCATATGTCCATGGTAGGTCATGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTTCTGGTATGGTAGGTCCCATATGTCCATGGTAGGTCATGATG  550

seq1  TTTTGCAAAAGTCACATAATAATACATGAACAGCCACCCCAGTGATGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAAAAGTCACATAATAATACATGAACAGCCACCCCAGTGATGTCA  600

seq1  CTCTACAGACCAAGTCTAAATTAGCTACTCCTCTCCTTTTTGCTCAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGACCAAGTCTAAATTAGCTACTCCTCTCCTTTTTGCTCAGTTC  650

seq1  CTATTTCTTTACCTTTTAGTAATGTTTTTTTTTTTTGGTCCTTGACTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTTTACCTTTTAGTAATGTTTTTTTTTTTTGGTCCTTGACTTCC  700

seq1  TGATTCAGAACAGGTTTCCAGGACATCACTTGGGGGCATCCAGGCTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAGAACAGGTTTCCAGGACATCACTTGGGGGCATCCAGGCTGTTT  750

seq1  GTCTTAAATTCTCTAAGCTTCTTACTTTTTTGTTTCACTATAGTGATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAATTCTCTAAGCTTCTTACTTTTTTGTTTCACTATAGTGATCTT  800

seq1  CACCTTCCCGTTATGTCACCTTCCAGCCTCTGCTGCCTACCCAGTCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCCCGTTATGTCACCTTCCAGCCTCTGCTGCCTACCCAGTCCAGT  850

seq1  TGATCTCATGGTGGAAATACTTCTTAGGTCTAAC-CCTTCCTTTGAGCCT  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGATCTCATGGTGGAAATACTTCTTAGGTCTAACTCCTTCCTTTGAGCCT  900

seq1  CCTAGTTTCGAGTCTATC-AGTCTGTCTGTCCTCATCTATTTTCTCACTA  948
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTAGTTTCGAGTCTATCAAGTCTGTCTGTCCTCATCTATTTTCTCACTA  950

seq1  AATTCAGTTTCCGGATTCCCTACCATCCT-GTCATAATCCATATTTATCT  997
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATTCAGTTTCCGGATTCCCTACCATCCTGGTCATAATCCATATTTATCT  1000

seq1  GAAGAATACTGTTAAGGCTTAAACTTGC-TCACATCCTTGTTTAAGGACT  1046
      |||||||||||||||||||||||||||| ||||||||||  |||||||||
seq2  GAAGAATACTGTTAAGGCTTAAACTTGCTTCACATCCTTTGTTAAGGACT  1050

seq1  TGTATCGTCTGGTGGTA-TAACTG---AAAAACTTCTTTGGAAAAACACA  1092
      ||||||||||||||||| ||||||   |||| ||||||||||||||||||
seq2  TGTATCGTCTGGTGGTATTAACTGTGAAAAACCTTCTTTGGAAAAACACA  1100

seq1  AGGATTTTCATTTTTCTTCTGATTCAAATCTATCTGAAGGCAGCTGCAGC  1142
      ||   ||||| |||||||||||||| ||||||||||||||||||||||||
seq2  AG--ATTTCA-TTTTCTTCTGATTC-AATCTATCTGAAGGCAGCTGCAGC  1146

seq1  TTTCAATCTTTTCATTTCCTTAGCTTAAGCCACAAGTCACCCTTGCTGGC  1192
      ||||||||||||||||| |||| |||||| ||||||| ||||| ||||  
seq2  TTTCAATCTTTTCATTT-CTTAACTTAAG-CACAAGTTACCCTGGCTGCT  1194

seq1  TACCACAAGATCACCCTTGCTGACCTTACATAGGCTGCTC  1232
      ||  ||||||| |||| |||||||| ||| || |||||||
seq2  TA--ACAAGAT-ACCC-TGCTGACC-TAC-TA-GCTGCTC  1227

seq1: chr18_70074639_70075656
seq2: B6Ng01-060D17.g_162_1161 (reverse)

seq1  AGTCAGTTGCGGTGTACACGTCAGTGTGGATTCTCTTCTTGTACACGTTT  50
      |||||| ||| | |||| ||||||  ||||||||||   ||||||| |||
seq2  AGTCAG-TGC-GAGTAC-CGTCAG-ATGGATTCTCT--CTGTACAC-TTT  43

seq1  GTGAGATTCATCCATGCTATCGTATACAGAAGAACGTATTTGTTCTTCTT  100
      |||||||||||||||||| ||||||| ||||| ||||||||||||||| |
seq2  GTGAGATTCATCCATGCT-TCGTATA-AGAAG-ACGTATTTGTTCTTC-T  89

seq1  CTTGTTCAGGATTTCATTGCACACAGTACCACTTCACAACTATATTCTGA  150
      |||||||||||||||||||||||||||| ||| |||| |||||| |||||
seq2  CTTGTTCAGGATTTCATTGCACACAGTA-CAC-TCAC-ACTATA-TCTGA  135

seq1  TGTCTTCCTCATGTAATTTAATGGACAGGATTTATTCATTTTACTCATAG  200
      |||||| ||||||||||||||| |||| ||||||||||||||||||||||
seq2  TGTCTT-CTCATGTAATTTAAT-GACAAGATTTATTCATTTTACTCATAG  183

seq1  TAGTGTGTGATTTCGGTATCTTGCTTTACAAGTTTCCTAAAGCAAAATGA  250
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGTGTGTGATTTCGGTATCTTGCTTTACAAGTTT-CTAAAGCAAAATGA  232

seq1  TGAAGCCCTCCTAGGATAACTCTCAGCATCGTTATTGCTTTGCTTTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCCTCCTAGGATAACTCTCAGCATCGTTATTGCTTTGCTTTTTAC  282

seq1  ATTTAGGTCTGAGGTCTGCCTGGAGTCATTTACATACATGCTGTGAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTCTGAGGTCTGCCTGGAGTCATTTACATACATGCTGTGAGAAC  332

seq1  TAGGTTCAAGTTTGTGCTCCTCAGTCACTGATACTGGTGCTGGTGTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCAAGTTTGTGCTCCTCAGTCACTGATACTGGTGCTGGTGTTGAA  382

seq1  CACACCATTTCCAATCGCCATGGACCCTCCTCTGCCTTCTGAAGTAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATTTCCAATCGCCATGGACCCTCCTCTGCCTTCTGAAGTAAATG  432

seq1  GCGGGACATGCTTTGAGCCACATATGAAGTATGTACTACTGTCTATCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGACATGCTTTGAGCCACATATGAAGTATGTACTACTGTCTATCTTT  482

seq1  TTGAGTCATGTATAAAGATAATTACTACAGCTTTTCATGATGTTTCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCATGTATAAAGATAATTACTACAGCTTTTCATGATGTTTCAGTG  532

seq1  TTTGTATTATCTTCCAATTTGGTTCACTTTTATTCAGGTTAGTCTCGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTATCTTCCAATTTGGTTCACTTTTATTCAGGTTAGTCTCGACT  582

seq1  CTGTTGAGATAGTCACATTTGTACATGCATTTTATAATCAGCTCTACGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGATAGTCACATTTGTACATGCATTTTATAATCAGCTCTACGTC  632

seq1  TTGAAAATGTCATGTTAATTAGGACCTCTTTGAAGGTGGAGACATCAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATGTCATGTTAATTAGGACCTCTTTGAAGGTGGAGACATCAATA  682

seq1  TGAAGGACAACTGGTAACTTGGTTGCACACCTTCTGTGTTACAAATCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACAACTGGTAACTTGGTTGCACACCTTCTGTGTTACAAATCAGC  732

seq1  ACTTTCCTCTATGAACATTTTCTCTATAGCCTCTTAATTTTGCCACAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTCTATGAACATTTTCTCTATAGCCTCTTAATTTTGCCACAGTT  782

seq1  CATGTTAATAGTTGCCTATGTGTAGAGTTTTTGTTGTTCTTGTTATTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAATAGTTGCCTATGTGTAGAGTTTTTGTTGTTCTTGTTATTTGA  832

seq1  TACATAAGTATTTATTGCTTACTAATGCTATGGTAATTTTTAAAAAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAGTATTTATTGCTTACTAATGCTATGGTAATTTTTAAAAAATAT  882

seq1  ACTTTATAACTTACTGTTATTGTATAGAAATGTAATCTTGTGTGTCATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATAACTTACTGTTATTGTATAGAAATGTAATCTTGTGTGTCATCT  932

seq1  AGGTGCACAGCAATACAGGCGAATCCACTTTTTAATTCTACAGTTTGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCACAGCAATACAGGCGAATCCACTTTTTAATTCTACAGTTTGTAT  982

seq1  ATTAATGTGAACATTCCT  1018
      ||||||||||||||||||
seq2  ATTAATGTGAACATTCCT  1000