BAC Information

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BAC

Clone NameB6Ng01-060G19
Chromosome18 (Build37)
Map Location 44,047,614 - 44,230,636
singlet/doubletdoublet
Overlap geneSpink5, EG433178, LOC666969
Upstream genePpp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94
Downstream geneEG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060G19.bB6Ng01-060G19.g
ACCDH881400DH881401
length791,106
definitionDH881400|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G19, 5' end.DH881401|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,047,614 - 44,047,691)(44,229,516 - 44,230,636)
sequence
atgtcacagagtcaggtggaaagatcattaaaaaagcagcggagagttga
ggagagggggaggggagatgggagaggga
gaattcctgggtgtaacttgaattttccaagtcgtaaggatgttcccaaa
ggagagaggtacattgtcatcagagcttcatcagaatgaacatttcaaaa
cagggataagcttgttagtttaaaaatctccatcacagccaaatagtagt
gatttctaatttttaaataaaaaaccaaaatgtattatttttactttgtt
aaaaagtgaaaagttactcaattgagaatttaaactagagcatattgaat
atttccttaattctataagctaaaaattgaagctattgtagacagcctaa
tttgcaaacatttggaaagatatctctgtgtaagttaaatgaacctagta
aacatcactggaagtttaaatgtaagacacatcatagggtaagatgtaat
agctctttacagagaagagaaataaaaatgaggggaaagctgtagtcata
acaagaaattgtgcctcaaaatataatgtgctaattaaaatacaccaaag
taaatatagcaagttagtacatagaaaaattgtggaaaatgcatctaatt
gaaagggattactgccaactcttcataactaagctatatgttatttgcca
aataatttatttcttcttcatcatttaaaatgcatctaccacatgttcct
ttttttcgcaagacactttaacttcttttggaaattactcaaaaaatttt
ttttatttactccatgagttaggatgagtttttttttttaaattttattt
aatctttttttttaatactctaaaagtattccctacccagtcaccatctg
actgttccacatcccatacctcatccccacactcctatctccaccaggat
gtcctcccttctccaccccaccagccctctccacactctggggactttgt
cttttgagggttaggtgtatcttcttgactgaactcagacccggcagtcc
tctgctgtatatgtgtagggcctcatatcagctgtgtatgctgcctggta
gtggtcagtgtctgaagagatctttggggtccagtagttagaattgctgg
tccttctacaaggtcactctcctcttcatctgatcggattcctattcaac
caaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44047614_44047691
seq2: B6Ng01-060G19.b_51_129

seq1  ATGTCACAGAGTCAGGTGGAAAGATCA-GAAAAAAGCAGCGGAGAGTTGA  49
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  ATGTCACAGAGTCAGGTGGAAAGATCATTAAAAAAGCAGCGGAGAGTTGA  50

seq1  GGAGAGGGGGAGGGGAGATGGGAGAGGGA  78
      |||||||||||||||||||||||||||||
seq2  GGAGAGGGGGAGGGGAGATGGGAGAGGGA  79

seq1: chr18_44229516_44230636
seq2: B6Ng01-060G19.g_66_1171 (reverse)

seq1  CCCTGTGGTTGAATTAGGGAAAATCTGGAACAAGATGAAGAGGAGGGTGA  50
      |||| |||||||| ||||   |||| |  |  ||||||||||||| ||||
seq2  CCCT-TGGTTGAA-TAGG---AATCCG--ATCAGATGAAGAGGAGAGTGA  43

seq1  CCCTGTAGAAGGACCAGCAATCTCAACTAACCTGGACCCCCAAGATCTC-  99
      || ||||||||||||||||||   |||||  ||||||||| |||||||| 
seq2  CCTTGTAGAAGGACCAGCAATTCTAACTA--CTGGACCCCAAAGATCTCT  91

seq1  TCAGACACTGGACCACCAACCAGGCAGCATACACCAGCTGATATGAGGCC  149
      ||||||||| ||||| | ||||||||||||||| ||||||||||||||||
seq2  TCAGACACT-GACCA-CTACCAGGCAGCATACA-CAGCTGATATGAGGCC  138

seq1  CCTAACACATATACAGCAGAGGACTGCCGGGTCTGAGTTCAGTCAAAGAA  199
      |   |||||||||||||||||||||||||||||||||||||||| |||||
seq2  C--TACACATATACAGCAGAGGACTGCCGGGTCTGAGTTCAGTC-AAGAA  185

seq1  GATACACCTAACCCTCAAAAGACAAAAGTCCCCAGAGTGTGGAGAGGGCT  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATACACCTAACCCTCAAAAGAC-AAAGTCCCCAGAGTGTGGAGAGGGCT  234

seq1  GGTGGGGTGGAGAAGGGAGGACATCCTGGTGGAGATAGGAGTGTGGGGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTGGAGAAGGGAGGACATCCTGGTGGAGATAGGAGTGTGGGGAT  284

seq1  GAGGTATGGGATGTGGAACAGTCAGATGGTGACTGGGTAGGGAATACTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGGGATGTGGAACAGTCAGATGGTGACTGGGTAGGGAATACTTT  334

seq1  TAGAGTATTAAAAAAAAAGATTAAATAAAATTTAAAAAAAAAAACTCATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTATTAAAAAAAAAGATTAAATAAAATTTAAAAAAAAAAACTCATC  384

seq1  CTAACTCATGGAGTAAATAAAAAAAATTTTTTGAGTAATTTCCAAAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCATGGAGTAAATAAAAAAAATTTTTTGAGTAATTTCCAAAAGAA  434

seq1  GTTAAAGTGTCTTGCGAAAAAAAGGAACATGTGGTAGATGCATTTTAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTGTCTTGCGAAAAAAAGGAACATGTGGTAGATGCATTTTAAAT  484

seq1  GATGAAGAAGAAATAAATTATTTGGCAAATAACATATAGCTTAGTTATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAAGAAATAAATTATTTGGCAAATAACATATAGCTTAGTTATGA  534

seq1  AGAGTTGGCAGTAATCCCTTTCAATTAGATGCATTTTCCACAATTTTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGGCAGTAATCCCTTTCAATTAGATGCATTTTCCACAATTTTTCT  584

seq1  ATGTACTAACTTGCTATATTTACTTTGGTGTATTTTAATTAGCACATTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTAACTTGCTATATTTACTTTGGTGTATTTTAATTAGCACATTAT  634

seq1  ATTTTGAGGCACAATTTCTTGTTATGACTACAGCTTTCCCCTCATTTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGGCACAATTTCTTGTTATGACTACAGCTTTCCCCTCATTTTTA  684

seq1  TTTCTCTTCTCTGTAAAGAGCTATTACATCTTACCCTATGATGTGTCTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCTCTGTAAAGAGCTATTACATCTTACCCTATGATGTGTCTTA  734

seq1  CATTTAAACTTCCAGTGATGTTTACTAGGTTCATTTAACTTACACAGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAACTTCCAGTGATGTTTACTAGGTTCATTTAACTTACACAGAGA  784

seq1  TATCTTTCCAAATGTTTGCAAATTAGGCTGTCTACAATAGCTTCAATTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCCAAATGTTTGCAAATTAGGCTGTCTACAATAGCTTCAATTTT  834

seq1  TAGCTTATAGAATTAAGGAAATATTCAATATGCTCTAGTTTAAATTCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATAGAATTAAGGAAATATTCAATATGCTCTAGTTTAAATTCTCA  884

seq1  ATTGAGTAACTTTTCACTTTTTAACAAAGTAAAAATAATACATTTTGGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTAACTTTTCACTTTTTAACAAAGTAAAAATAATACATTTTGGTT  934

seq1  TTTTATTTAAAAATTAGAAATCACTACTATTTGGCTGTGATGGAGATTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAAAAATTAGAAATCACTACTATTTGGCTGTGATGGAGATTTT  984

seq1  TAAACTAACAAGCTTATCCCTGTTTTGAAATGTTCATTCTGATGAAGCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAACAAGCTTATCCCTGTTTTGAAATGTTCATTCTGATGAAGCTC  1034

seq1  TGATGACAATGTACCTCTCTCCTTTGGGAACATCCTTACGACTTGGAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACAATGTACCTCTCTCCTTTGGGAACATCCTTACGACTTGGAAAA  1084

seq1  TTCAAGTTACACCCAGGAATTC  1121
      ||||||||||||||||||||||
seq2  TTCAAGTTACACCCAGGAATTC  1106