BAC Information

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BAC

Clone NameB6Ng01-060J01
Chromosome18 (Build37)
Map Location 52,911,602 - 53,015,169
singlet/doubletdoublet
Overlap geneSncaip, A730036E13Rik
Upstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1
Downstream geneLOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060J01.bB6Ng01-060J01.g
ACCDH881505DH881506
length1,1741,127
definitionDH881505|Mus musculus domesticus DNA, BAC clone: B6Ng01-060J01, 5' end.DH881506|Mus musculus domesticus DNA, BAC clone: B6Ng01-060J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,013,984 - 53,015,169)(52,911,602 - 52,912,749)
sequence
gaattctttcagaatctactctttcagagctattggctgtatttttaatc
actgttgcacaactgaggttcctaacctgagtgcatttaagttcttaaat
atgaagctgaattagtatttatttgccttcctgaacaagggaagtgtaca
gtgagattagcagatacatattttgaaagaatcacaggacatttgcagca
gcatggatttgaaacaaatgtgtatttggatatctaattaacttacaaaa
aaaaaccctccaagtcaatgaaattggatattttcttgaataccgtatgt
tgtccttatgcatttctatgctcatttgaagacaaccttagagctaacac
tcactggcttggagtcacagatattgggcaggaaatgcatgcaaatgttc
cacaaatttcttgtcttattagatgtgaacacttcgcaccaacttccctt
gctaacccttgccttccttacactacttgatatccaaggttccttgaact
aaattacccctcagttgactctgagccacaggggtccccagagacagggg
agcgggtttcagagtcactcgctgactcaaggatttggggcaaattatta
ataacaagtctctctcctcattagagacttggaatggacaacattagaac
ggacagcatactggtccttcctcagacttattttgtggagaagataagtg
tcactgaagatttggtacaatgtctagaattaggaatctctaaggaataa
ctcagaaaccttagtagcacctcatggctccagcccaccagaggtagatg
tctaattattcctgttaggaaaaaaaaagagtccagtaaggattgagtcc
tttggctgagagaagagcattctggggtagactctcaggctgtgatgagc
tggtaggtgttaagcacagctcagaagcctcggacagcactgacagtagc
catgcttgcagcacagtgcaaaccatctcagtgcagggatggagggagat
gagccttgggttatatgtctgttgagtgctttaaaggctacatccagggc
tactattaacaccagccgaacactccaaaaaccaaacaagacagacagac
aatacaaacaaaccgcagaagggccttcaggctggctgaaacgagaacta
aacaccagctacaataagaaagcc
gaattcaaaagaatagacaagactgatcacgaggaataagactttaagaa
gtaaagtttggttcttttaatttcaccgaataggcttctttactgtttaa
attttacatgaatatgtatttattaatttcaaaaatagatatcctagaaa
gatgacttagcggttacaagtgcttaacctgagtgttcctctttcagagg
acccaagtgtagctcccagcacccagatgctggctcgcggccatccataa
caccagtttcagcggaacccaatacctccttcaagctactgtggacatca
tgcgcgcacatggtgcacatgcatgcaggcaggcagtcccacgtgcagat
aaaatgctttaattaaatatttattctcaaaaacagactattatttttat
taaaagagaaatcatggaacatcaataatcatagaaaagtgggaaagcaa
atgggcagagctgagaaactcagctcaagcttgcgttctcgagcatagac
cacgtgtactgtgaggagttgggagtttattgcttctgtttggtttgaag
tatttgcttggttgttcatttgttttatgggacagggtcttgctgactag
gaaattgctctaacgaacagactggccttgaactgacagcagttattctg
cctctgcctcctagatgctggggttacaggcttacaccaccatgctcagt
ctaggcttacttttattgcagctgcccagcacaatactagtggagaagtt
aaaatggtggtacacgccaagagaattgtaagttcagagtcagtttaaga
tacatgacaagtccaaggccacttctggctaccttacaagctccagccat
ctcaaagatattgtttgtgatcagggtataatttctgcattaatagaaag
caagagaaaacaatgcatttcttcttttctattttttctcacttcctctt
ctctctcttttgcctccttttctcttctctgtctcttcattcagtccccc
ctccccccggccaggctcgatttttgaagaatggaatatagtaggtgtac
tatagtatattaacttggaccctgtgagcagcctgacttcagtgtggggg
acctcttgctcgagtgctggaattgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_53013984_53015169
seq2: B6Ng01-060J01.b_45_1218 (reverse)

seq1  GGCTTTCTATATTGTAGCTGTGTTTTAGTTCTTGTTTTCCAGCCAGCCTG  50
      |||||||| |||||||||||   ||||||||| ||||  |||||||||||
seq2  GGCTTTCT-TATTGTAGCTGGTGTTTAGTTCTCGTTT--CAGCCAGCCTG  47

seq1  AA-GCCCTTCTGCCTGTTTTTGTTTTTGTTTTGTCTTGTCTTGTCTTGTT  99
      || ||||||||||  | ||   | ||||| ||||| |||| |||||||||
seq2  AAGGCCCTTCTGC--GGTT---TGTTTGTATTGTC-TGTC-TGTCTTGTT  90

seq1  TTGTTTTTTGAGTGTTCTGCT-GTGTATAATAGTAGCCCTGGATGTAGCC  148
      | |||||| |||||||| ||| |||| |||||||||||||||||||||||
seq2  TGGTTTTTGGAGTGTTCGGCTGGTGT-TAATAGTAGCCCTGGATGTAGCC  139

seq1  TTTAAAGCACTCAACAGACATATAACCCAAGGCTCATCTCCCTCCATCCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCACTCAACAGACATATAACCCAAGGCTCATCTCCCTCCATCCC  189

seq1  TGCACCTGAGATGGTTTGCACTGTGCTGCAAGCATGGCTACTGTCAGTGC  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCA-CTGAGATGGTTTGCACTGTGCTGCAAGCATGGCTACTGTCAGTGC  238

seq1  TGTCCGAGGCTTCTGAGCTGTGCTTTAACACCTACCAGCTCATCACAGCC  298
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTCCGAGGCTTCTGAGCTGTGC-TTAACACCTACCAGCTCATCACAGCC  287

seq1  TGAGAGTCTACCCCAGAATGCTCTTCTCTCAGCCAAAGGACTCAATCCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTCTACCCCAGAATGCTCTTCTCTCAGCCAAAGGACTCAATCCTT  337

seq1  ACTGGACTCTTGTTTTTTTCCTAACAGGAATAATTAGACATCTACCTCTG  398
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACTCTT-TTTTTTTCCTAACAGGAATAATTAGACATCTACCTCTG  386

seq1  GTGGGCTGGAGCCATGAGGTGCTACTAAGGTTTCTGAGTTATTCCTTAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGGAGCCATGAGGTGCTACTAAGGTTTCTGAGTTATTCCTTAGA  436

seq1  GATTCCTAATTCTAGACATTGTACCAAATCTTCAGTGACACTTATCTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTAATTCTAGACATTGTACCAAATCTTCAGTGACACTTATCTTCT  486

seq1  CCACAAAATAAGTCTGAGGAAGGACCAGTATGCTGTCCGTTCTAATGTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAATAAGTCTGAGGAAGGACCAGTATGCTGTCCGTTCTAATGTTG  536

seq1  TCCATTCCAAGTCTCTAATGAGGAGAGAGACTTGTTATTAATAATTTGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCAAGTCTCTAATGAGGAGAGAGACTTGTTATTAATAATTTGCC  586

seq1  CCAAATCCTTGAGTCAGCGAGTGACTCTGAAACCCGCTCCCCTGTCTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCTTGAGTCAGCGAGTGACTCTGAAACCCGCTCCCCTGTCTCTG  636

seq1  GGGACCCCTGTGGCTCAGAGTCAACTGAGGGGTAATTTAGTTCAAGGAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCCTGTGGCTCAGAGTCAACTGAGGGGTAATTTAGTTCAAGGAAC  686

seq1  CTTGGATATCAAGTAGTGTAAGGAAGGCAAGGGTTAGCAAGGGAAGTTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATATCAAGTAGTGTAAGGAAGGCAAGGGTTAGCAAGGGAAGTTGG  736

seq1  TGCGAAGTGTTCACATCTAATAAGACAAGAAATTTGTGGAACATTTGCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAGTGTTCACATCTAATAAGACAAGAAATTTGTGGAACATTTGCAT  786

seq1  GCATTTCCTGCCCAATATCTGTGACTCCAAGCCAGTGAGTGTTAGCTCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCTGCCCAATATCTGTGACTCCAAGCCAGTGAGTGTTAGCTCTA  836

seq1  AGGTTGTCTTCAAATGAGCATAGAAATGCATAAGGACAACATACGGTATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTCTTCAAATGAGCATAGAAATGCATAAGGACAACATACGGTATT  886

seq1  CAAGAAAATATCCAATTTCATTGACTTGGAGGGTTTTTTTTTGTAAGTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATATCCAATTTCATTGACTTGGAGGGTTTTTTTTTGTAAGTTA  936

seq1  ATTAGATATCCAAATACACATTTGTTTCAAATCCATGCTGCTGCAAATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATATCCAAATACACATTTGTTTCAAATCCATGCTGCTGCAAATGT  986

seq1  CCTGTGATTCTTTCAAAATATGTATCTGCTAATCTCACTGTACACTTCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATTCTTTCAAAATATGTATCTGCTAATCTCACTGTACACTTCCC  1036

seq1  TTGTTCAGGAAGGCAAATAAATACTAATTCAGCTTCATATTTAAGAACTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGGAAGGCAAATAAATACTAATTCAGCTTCATATTTAAGAACTT  1086

seq1  AAATGCACTCAGGTTAGGAACCTCAGTTGTGCAACAGTGATTAAAAATAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACTCAGGTTAGGAACCTCAGTTGTGCAACAGTGATTAAAAATAC  1136

seq1  AGCCAATAGCTCTGAAAGAGTAGATTCTGAAAGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATAGCTCTGAAAGAGTAGATTCTGAAAGAATTC  1174

seq1: chr18_52911602_52912749
seq2: B6Ng01-060J01.g_66_1192

seq1  GAATTCAAAAGAATAGACAAGACTGATCACGAGGAATAAGACTTTAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGAATAGACAAGACTGATCACGAGGAATAAGACTTTAAGAA  50

seq1  GTAAAGTTTGGTTCTTTTAATTTCACCGAATAGGCTTCTTTACTGTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTTTGGTTCTTTTAATTTCACCGAATAGGCTTCTTTACTGTTTAA  100

seq1  ATTTTACATGAATATGTATTTATTAATTTCAAAAATAGATATCCTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACATGAATATGTATTTATTAATTTCAAAAATAGATATCCTAGAAA  150

seq1  GATGACTTAGCGGTTACAAGTGCTTAACCTGAGTGTTCCTCTTTCAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTTAGCGGTTACAAGTGCTTAACCTGAGTGTTCCTCTTTCAGAGG  200

seq1  ACCCAAGTGTAGCTCCCAGCACCCAGATGCTGGCTCGCGGCCATCCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGTGTAGCTCCCAGCACCCAGATGCTGGCTCGCGGCCATCCATAA  250

seq1  CACCAGTTTCAGCGGAACCCAATACCTCCTTCAAGCTACTGTGGACATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTTTCAGCGGAACCCAATACCTCCTTCAAGCTACTGTGGACATCA  300

seq1  TGCGCGCACATGGTGCACATGCATGCAGGCAGGCAGTCCCACGTGCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCGCACATGGTGCACATGCATGCAGGCAGGCAGTCCCACGTGCAGAT  350

seq1  AAAATGCTTTAATTAAATATTTATTCTCAAAAACAGACTATTATTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTTTAATTAAATATTTATTCTCAAAAACAGACTATTATTTTTAT  400

seq1  TAAAAGAGAAATCATGGAACATCAATAATCATAGAAAAGTGGGAAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAAATCATGGAACATCAATAATCATAGAAAAGTGGGAAAGCAA  450

seq1  ATGGGCAGAGCTGAGAAACTCAGCTCAAGCTTGCGTTCTCGAGCATAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGAGCTGAGAAACTCAGCTCAAGCTTGCGTTCTCGAGCATAGAC  500

seq1  CACGTGTACTGTGAGGAGTTGGGAGTTTATTGCTTCTGTTTGGTTTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGTACTGTGAGGAGTTGGGAGTTTATTGCTTCTGTTTGGTTTGAAG  550

seq1  TATTTGCTTGGTTGTTCATTTGTTTTATGGGACAGGGTCTTGCTGACTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTTGGTTGTTCATTTGTTTTATGGGACAGGGTCTTGCTGACTAG  600

seq1  GAAATTGCTCTAACGAACAGACTGGCCTTGAACTGACAGCAGTTATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGCTCTAACGAACAGACTGGCCTTGAACTGACAGCAGTTATTCTG  650

seq1  CCTCTGCCTCCTAGATGCTGGGGTTACAGGCTTACACCACCATGCTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCTAGATGCTGGGGTTACAGGCTTACACCACCATGCTCAGT  700

seq1  CTAGGCTTACTTTTATTGCAGCTGCCCAGCACAATACTAGTGGAGAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTTACTTTTATTGCAGCTGCCCAGCACAATACTAGTGGAGAAGTT  750

seq1  AAAATGGTGGTACACGCCAAGAGAATTGTAAGTTCAGAGTCAGTTTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTGGTACACGCCAAGAGAATTGTAAGTTCAGAGTCAGTTTAAGA  800

seq1  TACATGACAAGTCCAAGGCCACTTCTGGCTACCTTACAAGCTCCAGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGACAAGTCCAAGGCCACTTCTGGCTACCTTACAAGCTCCAGCCAT  850

seq1  CTCAAAGATATTGTTTGTGATCAGGGTATAATTTCTGCATTAATAGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGATATTGTTTGTGATCAGGGTATAATTTCTGCATTAATAGAAAG  900

seq1  CAAGAGAAAACAATGCATTTCTTCTTTTCTTATTTTTTCTCCACTTCCTC  950
      ||||||||||||||||||||||||||||| |||||||||| |||||||| 
seq2  CAAGAGAAAACAATGCATTTCTTCTTTTC-TATTTTTTCT-CACTTCCT-  947

seq1  CTTCTCCTCTTCTTTTGCCTCCTTTTCTTCTTCCTCTTGTTCTCCTTCAT  1000
      ||||| ||| ||||||||||||||||| |||| ||||   ||| ||||||
seq2  CTTCT-CTC-TCTTTTGCCTCCTTTTC-TCTT-CTCT--GTCT-CTTCAT  990

seq1  TCAGTCCCCCCTCCCCCCGCCCAGGCCTCGATTTTTTGAGAATGGAATAT  1050
      ||||||||||||||||||| ||||| ||||||||||  ||||||||||||
seq2  TCAGTCCCCCCTCCCCCCGGCCAGG-CTCGATTTTTGAAGAATGGAATAT  1039

seq1  AGTA-GTGTACTATAGTACACATTAACTTGGAACACTGTGGAGCAGGCTG  1099
      |||| ||||||||||||  | |||||||||| || |||| |||||| |||
seq2  AGTAGGTGTACTATAGT--ATATTAACTTGG-ACCCTGT-GAGCAGCCTG  1085

seq1  ACCTCAAGTTTGTGGTGACCCTCCTTGCCTCCAGAGTGCTGGAATTGCA  1148
      || |||    ||||| |  ||| |||| |||  ||||||||||||||||
seq2  ACTTCA---GTGTGGGGGACCT-CTTG-CTC--GAGTGCTGGAATTGCA  1127