BAC Information

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BAC

Clone NameB6Ng01-060L24
Chromosome18 (Build37)
Map Location 68,297,402 - 68,431,062
singlet/doubletdoublet
Overlap geneD18Ertd653e, 4933403F05Rik
Upstream geneGnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939
Downstream geneRnmt, Mc5r, Mc2r, LOC100043380, EG225681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060L24.bB6Ng01-060L24.g
ACCDH881639DH881640
length4971,047
definitionDH881639|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L24, 5' end.DH881640|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,430,560 - 68,431,062)(68,297,402 - 68,298,458)
sequence
actaattacagaagacattgttgggccaggtatgctgtagcatgcctctt
agttctagtacttgggaaacagttctctgagtccaaggacagcctggtct
acaagatgaattcgggaagaaaataaaacactaccaagaacccccatata
aagcatgtatcctagggagggaggaagggaaaggacagtgggagaggcag
aagtggaggggttaaatacacacacacacacatataatgtacgcattttt
aaatgatactaaatgttaagagagagtatagttaagtgcttgcactatct
gtacctttggttctggagggtccaatgacacctttgacttctgtcagtca
gcaccaggctcacaggcagtgcacatacatgtatatgtgcaggtaaaaga
ctcatgcacataagataaatattttaaaatatattaatatattttgaaag
aaaagccatataaagaggtattttgatgtgtgttattttgggttgtt
gaattctgtgagagccctcaggcccaaaggggagcaatcctcaggccttc
ccagacttccagaaatgtggctgccagatgtttgcagtgtcttggcttcc
tatacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacagagagagagtcattggaaaagaagcattctccgtgt
atttcctcagcccctatttttaatagcttcttatagttgtgtttcatggg
ggcggggaagcttagagcactttacaattttatatctaaggaaggttaga
gaaaccagctctcgctgggtatacccacatcacacttaagggcccgcctc
gtgcttgtcaacatgcagccaactcacaatgaacacagtgacattctggg
agatacttttcccttcttactgggcttttgcttataatagtttctgagtt
tgtattcttacgagttttgtctgtacgcacgcacgtgtgtgcgtgttcac
gtgcgactctgcatgtgtgtgtgcttcttgtgctcattctttgtttctcg
ttttttctttttcctctgttttgttctattctggtgtttgtccctttttt
aaagagagagagaaagatggcacagggttgggaatgggtaggggggctct
aggaggagacgaggaaggacaaaccttgatcagaatatattgtatgaaaa
aaaagaaatctatttgtaataaagaataaaacaagcaagcaaacaaacaa
acaaacaaaacgtcagtttggcatgacatgtgttgtcctgcagccagatg
agtcacctgtatggagttctcatggtgcgtgactcaatcgtactgcatag
cacaggtccggacactgccatgcgctatgtgacatcccctatatgatatc
tcacctttcatacctgcatagacatagctgatgtctgagttggctcctct
cattaaaaccaccattttctccattgtcctcgaaggagtgagctgttttt
ttttttggttgttttgtttagtttggcttataagatgtgtttggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68430560_68431062
seq2: B6Ng01-060L24.b_45_547 (reverse)

seq1  AACAACCCAAAATAACACACATCAAAATACCTCTTTATATGGCTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCCAAAATAACACACATCAAAATACCTCTTTATATGGCTTTTCTT  50

seq1  TCAAAATATATTAATATATTTTAAAATATTTATCTTATGTGCATGAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATATTAATATATTTTAAAATATTTATCTTATGTGCATGAGTCT  100

seq1  TTTACCTGCACATATACATGTATGTGCACTGCCTGTGAGCCTGGTGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGCACATATACATGTATGTGCACTGCCTGTGAGCCTGGTGCTGA  150

seq1  CTGACAGAAGTCAAAGGTGTCATTGGACCCTCCAGAACCAAAGGTACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGAAGTCAAAGGTGTCATTGGACCCTCCAGAACCAAAGGTACAGA  200

seq1  TAGTGCAAGCACTTAACTATACTCTCTCTTAACATTTAGTATCATTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAAGCACTTAACTATACTCTCTCTTAACATTTAGTATCATTTAAA  250

seq1  AATGCGTACATTATATGTGTGTGTGTGTGTATTTAACCCCTCCACTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGTACATTATATGTGTGTGTGTGTGTATTTAACCCCTCCACTTCTG  300

seq1  CCTCTCCCACTGTCCTTTCCCTTCCTCCCTCCCTAGGATACATGCTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCACTGTCCTTTCCCTTCCTCCCTCCCTAGGATACATGCTTTAT  350

seq1  ATGGGGGTTCTTGGTAGTGTTTTATTTTCTTCCCGAATTCATCTTGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGTTCTTGGTAGTGTTTTATTTTCTTCCCGAATTCATCTTGTAGA  400

seq1  CCAGGCTGTCCTTGGACTCAGAGAACTGTTTCCCAAGTACTAGAACTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGTCCTTGGACTCAGAGAACTGTTTCCCAAGTACTAGAACTAAG  450

seq1  AGGCATGCTACAGCATACCTGGCCCAACAATGTCTTCTGTAATTAGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCTACAGCATACCTGGCCCAACAATGTCTTCTGTAATTAGTGAA  500

seq1  TTC  503
      |||
seq2  TTC  503

seq1: chr18_68297402_68298458
seq2: B6Ng01-060L24.g_66_1112

seq1  GAATTCTGTGAGAGCCCTCAGGCCCAAAGGGGAGCAATCCTCAGGCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGAGCCCTCAGGCCCAAAGGGGAGCAATCCTCAGGCCTTC  50

seq1  CCAGACTTCCAGAAATGTGGCTGCCAGATGTTTGCAGTGTCTTGGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTTCCAGAAATGTGGCTGCCAGATGTTTGCAGTGTCTTGGCTTCC  100

seq1  TATACACACACACACACACACACACACACACACACACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACACACACACACACACACACACACACACACACACACACACACACA  150

seq1  CACACACACACACAGAGAGAGAGTCATTGGAAAAGAAGCATTCTCCGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAGAGAGAGAGTCATTGGAAAAGAAGCATTCTCCGTGT  200

seq1  ATTTCCTCAGCCCCTATTTTTAATAGCTTCTTATAGTTGTGTTTCATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCAGCCCCTATTTTTAATAGCTTCTTATAGTTGTGTTTCATGGG  250

seq1  GGCGGGGAAGCTTAGAGCACTTTACAATTTTATATCTAAGGAAGGTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGAAGCTTAGAGCACTTTACAATTTTATATCTAAGGAAGGTTAGA  300

seq1  GAAACCAGCTCTCGCTGGGTATACCCACATCACACTTAAGGGCCCGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGCTCTCGCTGGGTATACCCACATCACACTTAAGGGCCCGCCTC  350

seq1  GTGCTTGTCAACATGCAGCCAACTCACAATGAACACAGTGACATTCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTCAACATGCAGCCAACTCACAATGAACACAGTGACATTCTGGG  400

seq1  AGATACTTTTCCCTTCTTACTGGGCTTTTGCTTATAATAGTTTCTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTTTCCCTTCTTACTGGGCTTTTGCTTATAATAGTTTCTGAGTT  450

seq1  TGTATTCTTACGAGTTTTGTCTGTACGCACGCACGTGTGTGCGTGTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTACGAGTTTTGTCTGTACGCACGCACGTGTGTGCGTGTTCAC  500

seq1  GTGCGACTCTGCATGTGTGTGTGCTTCTTGTGCTCATTCTTTGTTTCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGACTCTGCATGTGTGTGTGCTTCTTGTGCTCATTCTTTGTTTCTCG  550

seq1  TTTTTTCTTTTTCCTCTGTTTTGTTCTATTCTGGTGTTTGTCCCTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTTCCTCTGTTTTGTTCTATTCTGGTGTTTGTCCCTTTTTT  600

seq1  AAAGAGAGAGAGAAAGATGGCACAGGGTTGGGAATGGGTAGGGGGGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGAGAAAGATGGCACAGGGTTGGGAATGGGTAGGGGGGCTCT  650

seq1  AGGAGGAGACGAGGAAGGACAAACCTTGATCAGAATATATTGTATGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGACGAGGAAGGACAAACCTTGATCAGAATATATTGTATGAAAA  700

seq1  AAAAGAAATCTATTTGTAATAAAGAATAAAACAAGCAAGCAAACAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATCTATTTGTAATAAAGAATAAAACAAGCAAGCAAACAAACAA  750

seq1  ACAAACAAAACGTCAGTTTGGCATGACATGTGTTGTCCTGCAGCCAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAACGTCAGTTTGGCATGACATGTGTTGTCCTGCAGCCAGATG  800

seq1  AGTCACCTGTATGGAGTTCTCATGGTGCGTGACTCAAATCGTACTGCATA  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTCACCTGTATGGAGTTCTCATGGTGCGTGACTC-AATCGTACTGCATA  849

seq1  GCACAGGTCCCGGACACTGCCATGCGCTATGTGACATCCCCTATATGATA  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGT-CCGGACACTGCCATGCGCTATGTGACATCCCCTATATGATA  898

seq1  TCTCACCTTCCATACCTGCCATAGACATAGCTGATGTCTGAGTTGGC-CC  949
      ||||||||| |||||||| |||||||||||||||||||||||||||| ||
seq2  TCTCACCTTTCATACCTG-CATAGACATAGCTGATGTCTGAGTTGGCTCC  947

seq1  TCTCATTAAAACCACCATTTTCTCACAGTTGTTCTCTGAGGAGTTGAGCT  999
      |||||||||||||||||||||||| || |||| |||  ||||| ||||||
seq2  TCTCATTAAAACCACCATTTTCTC-CA-TTGTCCTCGAAGGAG-TGAGCT  994

seq1  GTTTTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTGCTTTTAAAGAATGTG  1049
      ||||||||||||     ||||||||||| |||| |||| |||   |||||
seq2  GTTTTTTTTTTT---GGTTGTTTTGTTTAGTTTGGCTTATAA--GATGTG  1039

seq1  TTTGGAAA  1057
      ||||||||
seq2  TTTGGAAA  1047