BAC Information

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BAC

Clone NameB6Ng01-060N02
Chromosome18 (Build37)
Map Location 13,598,342 - 13,599,425
singlet/doubletsinglet
Overlap genenone
Upstream geneLama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379
Downstream geneLOC100040358, Zfp521, LOC100040094, LOC100040103, LOC100040391, LOC382096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060N02.bB6Ng01-060N02.g
ACCDH881686DH881687
length1,2501,057
definitionDH881686|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N02, 5' end.DH881687|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagctctgttgcccatttttaatagggttatttggttc
tctggagtctaacttcttgagttctttgtatatattggatattagccctc
tattggatgtaggattggtaaagatcttttcccaatctgttggttgccat
tttgacctattgacagtgtcctctgccttacagaagctttggaattttat
gaggtcccatttttccactcttgatcttacagcataagccattgctgttc
tgttcaggaactttttccctgtgcccatgtgttcaaggctttcccctact
ttctcttccattagattcagtgtatctggttttatgttgaggttcttgat
ccacttggacttgagctttgtacagggagatcagaatggatcaatttgca
ttcttctacgtgttgatggccagttgaaccggcaccatttgttgaaaatg
ctgtctattttttccactggatggttttagctcctttgtcaaagatcaag
tgacatatgtgtatggattcatttcagggtcttgaattctattccattga
tctacctgcctgtcactgtaccaataccatgcagtgtttatcactcttgc
tctgtagtacagcttgaggtcagggatgatgatttccctagaagttcttt
tattgttgaaaatagttttcactatcctggttttctttgttattccaaat
gaattttagaattgctctttctaactccatgaagaatttagttggaattt
tgatgaggattgtattgaatctgtagattgctttcagcaatatgaccatt
tttactatattaatccttccaatccatgagcatgggagatctttccaact
tctgaggtcttctttgatttctttcttcagagacttgaagttctggtcgt
acagatcttttacttgtttggctagaatcataccaagataaaatttaata
tcccttcatgttaaaagtcttggaaagaccataaattcagtgtcatacct
aaacatagtaaaagcatatacagccaacttagcaacctcaactaaatgga
gagaactaaagcaatccactagtcacgactaacagggcgcccactctccc
ttctatcaataataccggagtctgctagactattagcaaagggagtcaag
gatacaggtgaggaaaacaatcaaatttcatttgcgagaatatggtactt
agtagccaagttcggagaactctccacgcgtaaaacacactctcacgcag

gaattctttccttgaagagctgccctccccactgcctccagccttgtgac
ctggtttctggcttcaggtctcctcctgaccccagctcaacccctctcgc
tcctcacagaatcatttctgaggcctcaggttgccaaggaccacgaatgc
ctccaattccactgccttttagcagcctgtgcaacctgaaataatttgcc
tcaaagccagttctcggagaagctggtcagacaaataagggattgaacta
tatttcctttttgcaagcgactgccggcggcaacatctgttcactgtaac
aagattgggatattgctgtgctcctttgctacccagtctggccctttccc
tagtggagcacccccacacccaggggtcacctcacagagttttctctgta
gcctagtctgctacactaagaaactgataactaattgccatgacttcaga
tcttagcttggccagctgtgtcgaagagaggcagccctggtctctccagt
gctgcaggtctatactttatcctccataaaaaagtcaatattggagaaaa
aatgacatttaaaaatcataaaataagtagtctggtatttacctaacgtt
cttttcttctcttccctttataaggcacgtactatcttgtttactttctt
tgcagaggtaactttccagtttccaatgacttttttttttcacataaaat
acattaaaaaaaaaaaaaaccgaaaactaaagacacctgaaagcttcact
aaagggcctcgcagaagaatcagtgaactagaatccaaaacaacagaatg
tatccaaattaatatccaaagaggaaaaaaaatgggaaaaaattagtttc
aatgccagtatcaggtatctaagagtccagcagagaatgaatgagactga
aagagcttatttgaaactaacgggtgagggatgtttgcttcagctcagtg
ctgagctataggatgcacaaccacagtgctgatcatgacgtctaagtagg
aagagtaagcacagaaaagaagctgactgccaggctgcctctgtgatctc
ctcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_13598342_13599425
seq2: B6Ng01-060N02.g_66_1122 (reverse)

seq1  TGCTGAGGGAGCATCCACAGAGGCAGCCCCTGTGCAGTTCAGCTGTCTTT  50
      |||||| |||| || |||||||||||  |||| |||| |||||| |||||
seq2  TGCTGA-GGAG-AT-CACAGAGGCAG--CCTG-GCAG-TCAGCT-TCTTT  42

seq1  TCTTGGTGGCCTTACTCTGTCCCTTACTTAGACGTCATTGGAATCCAAGC  100
      |||  |||  |||||||| |||  ||||||||||||||    |||  |||
seq2  TCT--GTG--CTTACTCT-TCC--TACTTAGACGTCAT---GATC--AGC  80

seq1  ACTGTGGTTGTGCATCCTATAGCCTCAGCACTTGGAGCTGAAGCAAAACA  150
      |||||||||||||||||||||| |||||||||  |||||||||| |||||
seq2  ACTGTGGTTGTGCATCCTATAG-CTCAGCACT--GAGCTGAAGC-AAACA  126

seq1  TCCCTCACCCGTTAGTTTTCAAATAAGCTCTTTCAGTCTCATTCATTCTC  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCCTCACCCGTTAG-TTTCAAATAAGCTCTTTCAGTCTCATTCATTCTC  175

seq1  TGCTGGACTCTTAGATAACCTGATACTGGCATTGAAACTAATTTTTTCCC  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCTGGACTCTTAGAT-ACCTGATACTGGCATTGAAACTAATTTTTTCCC  224

seq1  ATTTTTTTTCCTCTTTGGATATTAATTTGGATACATTCTGTTGTTTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTCCTCTTTGGATATTAATTTGGATACATTCTGTTGTTTTGGA  274

seq1  TTCTAGTTCACTGATTCTTCTGCGAGGCCCTTTAGTGAAGCTTTCAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCACTGATTCTTCTGCGAGGCCCTTTAGTGAAGCTTTCAGGTG  324

seq1  TCTTTAGTTTTCGGTTTTTTTTTTTTTTTAATGTATTTTATGTGAAAAAA  400
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTTTTCGG-TTTTTTTTTTTTTTAATGTATTTTATGTGAAAAAA  373

seq1  AAAAGTCATTGGAAACTGGAAAGTTACCTCTGCAAAGAAAGTAAACAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCATTGGAAACTGGAAAGTTACCTCTGCAAAGAAAGTAAACAAGA  423

seq1  TAGTACGTGCCTTATAAAGGGAAGAGAAGAAAAGAACGTTAGGTAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACGTGCCTTATAAAGGGAAGAGAAGAAAAGAACGTTAGGTAAATAC  473

seq1  CAGACTACTTATTTTATGATTTTTAAATGTCATTTTTTCTCCAATATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTACTTATTTTATGATTTTTAAATGTCATTTTTTCTCCAATATTGA  523

seq1  CTTTTTTATGGAGGATAAAGTATAGACCTGCAGCACTGGAGAGACCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATGGAGGATAAAGTATAGACCTGCAGCACTGGAGAGACCAGGG  573

seq1  CTGCCTCTCTTCGACACAGCTGGCCAAGCTAAGATCTGAAGTCATGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTCTTCGACACAGCTGGCCAAGCTAAGATCTGAAGTCATGGCAA  623

seq1  TTAGTTATCAGTTTCTTAGTGTAGCAGACTAGGCTACAGAGAAAACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATCAGTTTCTTAGTGTAGCAGACTAGGCTACAGAGAAAACTCTG  673

seq1  TGAGGTGACCCCTGGGTGTGGGGGTGCTCCACTAGGGAAAGGGCCAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGACCCCTGGGTGTGGGGGTGCTCCACTAGGGAAAGGGCCAGACT  723

seq1  GGGTAGCAAAGGAGCACAGCAATATCCCAATCTTGTTACAGTGAACAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCAAAGGAGCACAGCAATATCCCAATCTTGTTACAGTGAACAGAT  773

seq1  GTTGCCGCCGGCAGTCGCTTGCAAAAAGGAAATATAGTTCAATCCCTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCGCCGGCAGTCGCTTGCAAAAAGGAAATATAGTTCAATCCCTTAT  823

seq1  TTGTCTGACCAGCTTCTCCGAGAACTGGCTTTGAGGCAAATTATTTCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGACCAGCTTCTCCGAGAACTGGCTTTGAGGCAAATTATTTCAGG  873

seq1  TTGCACAGGCTGCTAAAAGGCAGTGGAATTGGAGGCATTCGTGGTCCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGGCTGCTAAAAGGCAGTGGAATTGGAGGCATTCGTGGTCCTTG  923

seq1  GCAACCTGAGGCCTCAGAAATGATTCTGTGAGGAGCGAGAGGGGTTGAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTGAGGCCTCAGAAATGATTCTGTGAGGAGCGAGAGGGGTTGAGC  973

seq1  TGGGGTCAGGAGGAGACCTGAAGCCAGAAACCAGGTCACAAGGCTGGAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCAGGAGGAGACCTGAAGCCAGAAACCAGGTCACAAGGCTGGAGG  1023

seq1  CAGTGGGGAGGGCAGCTCTTCAAGGAAAGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGAGGGCAGCTCTTCAAGGAAAGAATTC  1057