BAC Information

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BAC

Clone NameB6Ng01-061G05
Chromosome18 (Build37)
Map Location 89,696,844 - 89,699,633
singlet/doubletsinglet
Overlap geneDok6
Upstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061G05.bB6Ng01-061G05.g
ACCDH882081DH882082
length9111,251
definitionDH882081|Mus musculus domesticus DNA, BAC clone: B6Ng01-061G05, 5' end.DH882082|Mus musculus domesticus DNA, BAC clone: B6Ng01-061G05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaacaaacactttaaagagaagattgaaaagcagcttattgat
actgtgtgctactaaatatacaatcccatatttaaagcaatttcagttgt
atttttactaataattcataggctcaggccatctattggtacaagaatgt
tacttgacctagtctactgagtaacattaaaatttaatatttatatattt
gtaaggatacacacccaactttcatcctatattgtagataacatcctagc
ttgtcagtttcttcatgagaccatagaatattttcatcttattttgaagg
tgtttttgaaaatattttaaattatatacttatgtgaaatcaggactttg
aaaaattttaaataattactttaaaatttctaaattgataaatattaggt
tgaacccgagaaattgcctggaataggactaaggattatagaaaacagag
gagtcaaggacaccacaagaatgcaacccacagaatgaactaaccatagc
tcacagagatttagagactagaataaatatcagggagcctatatggatat
gacatagatcctccccatatatgttatggctatatagtttagtggttgag
aaactcccaccagtgtgagcatgtctgtttctaacgcttttgcttgattt
tgggacacctttcctcgtagtgggttgcctaatccagccttgatatgagg
atttatgcctagtattactataacttgttatgctatatttggttgatctc
cctggcagacctgttctttctcaagggaaaggagtagtagatctgtggga
aagggtaggtggggtaaatacttagaggaagaaacagaaaggaaatggta
gtcggggcaatattaaatcttaatagaattacaggaaaagagaaaggtgc
acaaatgcaca

gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagacagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttactca
aaaaattggacatagtactaccggaggatcacacaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactgt
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgggtgaggtaacacaatcacagg
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagtatactcgagatataagataaaatttgcaaaacacatgaaactgaa
gaagaacgaagaccaaaatgtggacactttgccccttcttagaattggaa
acaatcacccatggaaggagttacagagacaaagtttggagctgagacaa
aaggatggaccatctagagactgccatattcagagatccatcccataatt
agcctccaaacgatgacacctttgagactaggccggggcctagcaaacac
ataagttgatgctctcagtcagctattggatggagcacaggacccccaat
ggaggagctagagaaagtatccaaggagataagagctctctaatagcgtt
ctcacgcccggcaggagacacacagacagaatcttctgcggcaaacttta
ttgcttacatctcaggagctaggagcgcaaatctctcagcctcaagcgaa
gttatctcttaatctttaaggagtcgagctcgccgtcaagcgcagagcgg
cgctctatgttacatctagctacaactagctcagctgcaagtctgaagat
gtccagcgaagaatggcgaatctgttcttaggagagaatattctttcgct
tagacactactccgtatggtcgcactggagcaacgtagctgtactcggaa
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89696844_89699633
seq2: B6Ng01-061G05.b_50_951

seq1  GAATTCTCAACAAACACTTTAAAGAGAAGATTGAAAAGCAGCTTATTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACAAACACTTTAAAGAGAAGATTGAAAAGCAGCTTATTGAT  50

seq1  ACTGTGTGCTACTAAATATACAATCCCATATTTAAAGCAATTTCAGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGCTACTAAATATACAATCCCATATTTAAAGCAATTTCAGTTGT  100

seq1  ATTTTTACTAATAATTCATAGGCTCAGGCCATCTATTGGTACAAGAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACTAATAATTCATAGGCTCAGGCCATCTATTGGTACAAGAATGT  150

seq1  TACTTGACCTAGTCTACTGAGTAACATTAAAATTTAATATTTATATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACCTAGTCTACTGAGTAACATTAAAATTTAATATTTATATATTT  200

seq1  GTAAGGATACACACCCAACTTTCATCCTATATTGTAGATAACATCCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATACACACCCAACTTTCATCCTATATTGTAGATAACATCCTAGC  250

seq1  TTGTCAGTTTCTTCATGAGACCATAGAATATTTTCATCTTATTTTGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGTTTCTTCATGAGACCATAGAATATTTTCATCTTATTTTGAAGG  300

seq1  TGTTTTTGAAAATATTTTAAATTATATACTTATGTGAAATCAGGACTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGAAAATATTTTAAATTATATACTTATGTGAAATCAGGACTTTG  350

seq1  AAAAATTTTAAATAATTACTTTAAAATTTCTAAATTGATAAATATTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTAAATAATTACTTTAAAATTTCTAAATTGATAAATATTAGGT  400

seq1  TGAACCCGAGAAATTGCCTGGAATAGGACTAAGGATTATAGAAAACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCGAGAAATTGCCTGGAATAGGACTAAGGATTATAGAAAACAGAG  450

seq1  GAGTCAAGGACACCACAAGAATGCAACCCACAGAATGAACTAACCATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGGACACCACAAGAATGCAACCCACAGAATGAACTAACCATAGC  500

seq1  TCACAGAGATTTAGAGACTAGAATAAATATCAGGGAGCCTATATGGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGATTTAGAGACTAGAATAAATATCAGGGAGCCTATATGGATAT  550

seq1  GACATAGATCCTCCCCATATATGTTATGGCTATATAGTTTAGTGGTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGATCCTCCCCATATATGTTATGGCTATATAGTTTAGTGGTTGAG  600

seq1  AAACTCCCACCAGTGTGAGCATGTCTGTTTCTAACGCTTTTGCTTGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCACCAGTGTGAGCATGTCTGTTTCTAACGCTTTTGCTTGATTT  650

seq1  TGGGACACCTTTCCTCGTAGTGGGTTGCCTAATCCAGCCTTGATATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACACCTTTCCTCGTAGTGGGTTGCCTAATCCAGCCTTGATATGAGG  700

seq1  ATTTATGCCTAGTATTACTATAACTTGTTATGCTATATTTGGTTGATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCCTAGTATTACTATAACTTGTTATGCTATATTTGGTTGATCTC  750

seq1  CCTGGCAGACCTGTTCTTTCTCAAGGGAAAGGAGTAGTAGATCTGTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGACCTGTTCTTTCTCAAGGGAAAGGAGTAGTAGATCTGTGGGA  800

seq1  AAGGGTAGGTGGGGTAAATACTTAGAGGAAGAAACAGAAAGGAAATGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAGGTGGGGTAAATACTTAGAGGAAGAAACAGAAAGGAAATGGTA  850

seq1  GTCGGGGCAATATTAAATCCTAAATAGAAATTACAGGAAAAGAGAAAGGT  900
      |||||||||||||||||| || ||||| ||||||||||||||||||||||
seq2  GTCGGGGCAATATTAAAT-CTTAATAG-AATTACAGGAAAAGAGAAAGGT  898

seq1  GCACAAAATGCACAAGTCATTCACACACACAAACACCACCATCACCACCA  950
      ||||                                              
seq2  GCAC----------------------------------------------  902

seq1  CCACCACACCACCACCACCAACATCATCAAAAATAACGAATTAACAATCA  1000
                                                        
seq2  --------------------------------------------------  902

seq1  TTGGTCATTAATATATCTCAACAGTGGTGGACTCAATTTTGTAATAAAAA  1050
                                                        
seq2  --------------------------------------------------  902

seq1  GACACAGGTTAATAGGTGGATGTGTAGACAGGATCCATCATTCTGCTTTA  1100
                                                        
seq2  --------------------------------------------------  902

seq1  TATAAGAAACACACATCAGCATCATAAAATAAATTGCCTCAGAGTAAAGG  1150
                                                        
seq2  --------------------------------------------------  902

seq1  AATGAAAAAACTCAAGGAACTGCGCATACTACTGAAGATGAGGAACAAGG  1200
                                                        
seq2  --------------------------------------------------  902

seq1  GGAACACTCATCCATTGCTGTTGGGAGTGCAAACTTGTACAACCACTATG  1250
                                                        
seq2  --------------------------------------------------  902

seq1  GAAATCAATTTGGCAGTTTCTCAGAAAATTAGGAGTGGTTCTACTTCAAT  1300
                                                        
seq2  --------------------------------------------------  902

seq1  ATCCAGCTCTACCACTCCTGGTCATATACCCAAAAGATACTCTACCATAC  1350
                                                        
seq2  --------------------------------------------------  902

seq1  CACAAGGACACTTGTTCAACTATATTCATAGCAGTTTTATGTAATATCCA  1400
                                                        
seq2  --------------------------------------------------  902

seq1  GAAACAGGAAACAACCCAGATGTCCCTCAACAGAAGAATGGAAAAAGGAA  1450
                                                        
seq2  --------------------------------------------------  902

seq1  ATATGGTTTGTTTACACACTGGAATACTACTCAGATATTAAGGACATCCT  1500
                                                        
seq2  --------------------------------------------------  902

seq1  GAAATTTTCAGATGAATACATGGAACTAGATAACATCATCCTGTGTAAGC  1550
                                                        
seq2  --------------------------------------------------  902

seq1  TAACTTAGACTCAAAAGGTCATATTAGCCAGAAAGTACAGGTTGTCCATA  1600
                                                        
seq2  --------------------------------------------------  902

seq1  CTACAGTCCACAAACCCAAAGAAACTAAATAACAAGGAGAGCCCAAATAA  1650
                                                        
seq2  --------------------------------------------------  902

seq1  AGATGGTTGAATCTCACTCAGAAGAGGAAATAAAATAGTCATTGGAGTTG  1700
                                                        
seq2  --------------------------------------------------  902

seq1  GATGGAGGTGGAGAACTGTGTGGGAGAGGGTATAAGGAGAGGATCTGGAG  1750
                                                        
seq2  --------------------------------------------------  902

seq1  GAGTGGGCATTAGCTGTAGGGAGAACCACGGAGACAGATTTGGGAGCATG  1800
                                                        
seq2  --------------------------------------------------  902

seq1  AAGAAAAATTTGAAGTGGCTAAAGTTGGGATGAAGGTGGGTGGGTGGCAC  1850
                                                        
seq2  --------------------------------------------------  902

seq1  ATCTCTAGGATGTGTCAAAAACCTGGGATGGGGGAGGCTCCAAGGAGTCT  1900
                                                        
seq2  --------------------------------------------------  902

seq1  ATAGGGATCAGACTCTAGCTGTGTCTCCTAGCATTAAAGGATATGAATTC  1950
                                                        
seq2  --------------------------------------------------  902

seq1  TGAACGGGCCACTTCCTGTAGACAGGTCTCCCAATGGAAGGATAAGGACA  2000
                                                        
seq2  --------------------------------------------------  902

seq1  GCAACCCACTCATAAAACCTGCAACCCCAAGTATGTCCTTCCTACTAGAA  2050
                                                        
seq2  --------------------------------------------------  902

seq1  GCACGGGGACAAAGATGGAGCAGAGGCAGAGGAAATGGTCAAACAATGAT  2100
                                                        
seq2  --------------------------------------------------  902

seq1  TGACACAGCCTGACACCTGTGCCATGGGCAAGAACCAATTCCAGACACTA  2150
                                                        
seq2  --------------------------------------------------  902

seq1  TTAATGATACTCTGTTATGCTTGTAGGCAGGAGACTACAAGAACTGTTCT  2200
                                                        
seq2  --------------------------------------------------  902

seq1  ATGTTAGGCTCCATACAGCAGCTGACTGAAACAGACACAGAGACTCATAG  2250
                                                        
seq2  --------------------------------------------------  902

seq1  CCGAACATTAGATGGAGCTGGGAGAGACTTGTGAAGGATTTGAAGGAGGG  2300
                                                        
seq2  --------------------------------------------------  902

seq1  ACTCAAAAAGGACAGGCACTCCACAGAAAGGCTAACAGAGTCAACTAACC  2350
                                                        
seq2  --------------------------------------------------  902

seq1  TGGATCCTTGGGATCTCCCAAAGACTGAAACACCAACAAAACAGCATACA  2400
                                                        
seq2  --------------------------------------------------  902

seq1  TGAATTTAGGCTCCCTGCATATATGTGGCTGATGAGAATCTTGGTCTTCA  2450
                                                        
seq2  --------------------------------------------------  902

seq1  TGTGGGCACTCCAACTGAAGTGTGCCCTTACCCTGATTATTTTGCCTACC  2500
                                                        
seq2  --------------------------------------------------  902

seq1  TGTGGATCTTCTTCCCCTAACTGGGGTGCCTTGTCTGGCCTTAGTGGGAC  2550
                                                        
seq2  --------------------------------------------------  902

seq1  AGGATGTGCCTAGCCTTACAGAGACTTGATATGCCAGGGTGGGTTGGGTA  2600
                                                        
seq2  --------------------------------------------------  902

seq1  CCCAGGAAGTGCCTCCCCCTTATAAGAGGAGGGGAAGGAGAGTCAGGGAG  2650
                                                        
seq2  --------------------------------------------------  902

seq1  GGGTTCTAGAGGAGGTATAGGAGGAGAGGGGTCAGCAATTGGGATATAAA  2700
                                                        
seq2  --------------------------------------------------  902

seq1  GTAAAGAAATAATTAATGGAGACAAAATAATGAATAAATAATTTTTTAAA  2750
                                                        
seq2  --------------------------------------------------  902

seq1  AATTCCTAAATAGAAATTTCGGGAAAAGAGAAAGGTGCAC  2790
                                              
seq2  ----------------------------------------  902


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