BAC Information

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BAC

Clone NameB6Ng01-062A13
Chromosome18 (Build37)
Map Location 25,402,763 - 25,575,968
singlet/doubletdoublet
Overlap geneAW554918
Upstream geneGalnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3, 5730494M16Rik
Downstream geneBrunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062A13.bB6Ng01-062A13.g
ACCDH882550DH882551
length988990
definitionDH882550|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A13, 5' end.DH882551|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,574,968 - 25,575,968)(25,402,763 - 25,403,772)
sequence
gaattcactttgtagacgaggccggccttgaattcacagagatccacctg
cctctgcctcccaactactgggattaaaggatttaccacataccagcctc
tcaaagtttttttaataagctttcaaaagtcacattagtttttaactata
tttgttcatgagaaacataagcttaaaccgaggaccaggtcccagagtga
aacacatccagccagctgcaggtactgggagtcataggccctatgggatt
cctttagataaagtttcctaggaaccctggggaatcaacagtcatactgc
attcttttctacacttaggacatactgtttcaaagggtgcttctcctctg
tagaagcagttaatcaatgaccagatgttttccataaactcttacccaat
catgtaatgccaggcttggaaacctccatttttttttttttcctttaaaa
accccttccccgagacctcacggttgcttttcctaatctgttgcatcagg
aaggtttgtggcccaagctctcaagttctcaagcttgaataaagaccctc
atgtgtttgcaccagagttgccatccctgggggtttctttggggtttttc
aatctgggcacaacacttccttctataaatcatgatttaatattcagcgt
gcagcaatgctgttactttatatagtcagagaagccacaaccttatacaa
ttacaagtataaatatatacaaagatgttatatgttttttttaatgaagt
ctagaaataatgttagccattaggctaatcaaatttctataaaatgtctg
ttaatcatgtgttaacatgcctatattttttggaaatacaagtgaaaggg
tattttctatcaatatgtagctgggtttgtatgcctaatcattactcaac
atttctgtttgtgttatttttttacttcttgattagtatcaaagattaga
gctctgttttcgaaaggacaatttctggacgataccag
gaattcctttgactcttcttatttttaatattaatttagaaaaagcttgg
tgatatcatcaaaaagcttggtaggattatgatttgaatgtatctatcta
tcgattcatccgtctgtctatccatgattcatctacccaaccagccactt
acctgcttgcctatctacttacctgcctacttaactactactgccttttc
aaaaacaaataggtggacagagttttcaagatattagttaggcctctgta
agagaaaaccttacattttttaaattgtcttttaaaaactactttaaagc
ttacacagacctcttacaatctacttattatcttagtatgtttaatcata
ttttgaaaattattcacctctacttttagtttaaaaaataaggtcataaa
tgtaagcttagtcactgtgatactgctgtaaagagactctatgacctatg
aaagaaagcatttaattggtacattgctgacagtttcataggctattagt
ccactctcatggttggggagcattgtggcaggcaggcatagtgttggaga
gggagctgagagcttacattctgatcagtaagcagagagcctaagcctga
catggccttatgaaacctccaagcccaccccccagtgtcacacttcctcc
aacaaggctgtacctctcaattcttcctgccctttcaaacacttacactc
cctggtgactaagctttcaactgtatgagcccatgagaagcattcttatc
caaacttcgccctgctctaggttccttagcttgctttgtctacctcatag
acactaataaaatgtaattgcttttctaaaaacaaaacaaatcactcagg
gtacctatataacttaactttaaaagtatttaaatttggtaagaaacaac
tttacctgtgtatatacttagatatatacgtacatatctgtgtttagata
gttcctagcttctttatgtagcacttaaattgtttgctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_25574968_25575968
seq2: B6Ng01-062A13.b_44_1031 (reverse)

seq1  CTGGTATCCGTCCAGAAATTTGTCCATTTCGAAAAACAGAGATTCTTAAT  50
      ||||||| |||||||||| |||||| ||||| ||||||||| |   ||||
seq2  CTGGTAT-CGTCCAGAAA-TTGTCC-TTTCG-AAAACAGAGCT--CTAAT  44

seq1  CTTTGAATACCAAATCAAGAAGAAAAAAAAAAAAAAAAAAACAGAAATGT  100
      ||||| ||| | ||||||||||   ||||||| || | ||||||||||||
seq2  CTTTG-ATA-CTAATCAAGAAG--TAAAAAAATAACACAAACAGAAATGT  90

seq1  TGACTAATGATTAGGCATACAAACCCAGCTACATATTGATAGAAAATACC  150
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAGTAATGATTAGGCATACAAACCCAGCTACATATTGATAGAAAATA-C  139

seq1  CCATTCACTTGTATATCCAAAAAATATAGGCATGTTAACACATGAATAAA  200
      || ||||||||||| ||||||||||||||||||||||||||||| || ||
seq2  CCTTTCACTTGTATTTCCAAAAAATATAGGCATGTTAACACATG-ATTAA  188

seq1  CAGACATTTTTATAGAAATTTGATTAGCCTAATGGCTAACATTATTTCTA  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACA-TTTTATAGAAATTTGATTAGCCTAATGGCTAACATTATTTCTA  237

seq1  GACTTCATTAAAAAAAACATATAACATCTTTGTATATATTTATATTTGTA  300
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GACTTCATTAAAAAAAACATATAACATCTTTGTATATATTTATACTTGTA  287

seq1  ATTGTATAAGGTTGTGGCTTCTCTGACTATATAAAGTAACAGCATTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATAAGGTTGTGGCTTCTCTGACTATATAAAGTAACAGCATTGCTG  337

seq1  CACGCTGAATATTAAATCATGATTTATAGAAGGAAGTGTTGTGCCCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTGAATATTAAATCATGATTTATAGAAGGAAGTGTTGTGCCCAGAT  387

seq1  TGAAAAACCCCAAAGAAACCACCAGGGATGGCAACTCTGGTGCAAACACA  450
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAAAAACCCCAAAGAAACCCCCAGGGATGGCAACTCTGGTGCAAACACA  437

seq1  TGAGGGTCTTTATTCAAGCTTGAGAACTTGAGAGCTTGGGCCACAAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCTTTATTCAAGCTTGAGAACTTGAGAGCTTGGGCCACAAACCT  487

seq1  TCCTGATGCAACAGATTAGGAAAAGCAACCGTGAGGTCTCGGGGAAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGCAACAGATTAGGAAAAGCAACCGTGAGGTCTCGGGGAAGGGG  537

seq1  TTTTTAAAGGAAAAAAAAAAAAATGGAGGTTTCCAAGCCTGGCATTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGAAAAAAAAAAAAATGGAGGTTTCCAAGCCTGGCATTACAT  587

seq1  GATTGGGTAAGAGTTTATGGAAAACATCTGGTCATTGATTAACTGCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGTAAGAGTTTATGGAAAACATCTGGTCATTGATTAACTGCTTCT  637

seq1  ACAGAGGAGAAGCACCCTTTGAAACAGTATGTCCTAAGTGTAGAAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAGAAGCACCCTTTGAAACAGTATGTCCTAAGTGTAGAAAAGAA  687

seq1  TGCAGTATGACTGTTGATTCCCCAGGGTTCCTAGGAAACTTTATCTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTATGACTGTTGATTCCCCAGGGTTCCTAGGAAACTTTATCTAAAG  737

seq1  GAATCCCATAGGGCCTATGACTCCCAGTACCTGCAGCTGGCTGGATGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCATAGGGCCTATGACTCCCAGTACCTGCAGCTGGCTGGATGTGT  787

seq1  TTCACTCTGGGACCTGGTCCTCGGTTTAAGCTTATGTTTCTCATGAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTGGGACCTGGTCCTCGGTTTAAGCTTATGTTTCTCATGAACAA  837

seq1  ATATAGTTAAAAACTAATGTGACTTTTGAAAGCTTATTAAAAAAACTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTAAAAACTAATGTGACTTTTGAAAGCTTATTAAAAAAACTTTG  887

seq1  AGAGGCTGGTATGTGGTAAATCCTTTAATCCCAGTAGTTGGGAGGCAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGGTATGTGGTAAATCCTTTAATCCCAGTAGTTGGGAGGCAGAG  937

seq1  GCAGGTGGATCTCTGTGAATTCAAGGCCGGCCTCGTCTACAAAGTGAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATCTCTGTGAATTCAAGGCCGGCCTCGTCTACAAAGTGAATT  987

seq1  C  1001
      |
seq2  C  988

seq1: chr18_25402763_25403772
seq2: B6Ng01-062A13.g_68_1057

seq1  GAATTCCTTTGACTCTTCTTATTTTTAATATTAATTTAGAAAAAGCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGACTCTTCTTATTTTTAATATTAATTTAGAAAAAGCTTGG  50

seq1  TGATATCATCAAAAAGCTTGGTAGGATTATGATTTGAATGTATCTATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCATCAAAAAGCTTGGTAGGATTATGATTTGAATGTATCTATCTA  100

seq1  TCTATTCATCCATCTGTCTATCCATGATTCATCTACCCAACCAGCCACTT  150
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCGATTCATCCGTCTGTCTATCCATGATTCATCTACCCAACCAGCCACTT  150

seq1  ACCTGCTTGCCTATCTACTTACCTGCCTACTTAACTACTACTGCCTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTGCCTATCTACTTACCTGCCTACTTAACTACTACTGCCTTTTC  200

seq1  AAAAACAAATAGGTGGACAGAGTTTTCAAGATATTAGTTAGGCCTCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAATAGGTGGACAGAGTTTTCAAGATATTAGTTAGGCCTCTGTA  250

seq1  AGAGAAAACCTTACATTTTTTAAATTGTCTTTTAAAAACTACTTTAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACCTTACATTTTTTAAATTGTCTTTTAAAAACTACTTTAAAGC  300

seq1  TTACACAGACATCTTACAATCTACTTATTATCTTAGTATGTTTAATCATA  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGACCTCTTACAATCTACTTATTATCTTAGTATGTTTAATCATA  350

seq1  TTTTGAAAATTATTCACCTCTACTTTTAGTTTAAAAAATAAGGTCATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAATTATTCACCTCTACTTTTAGTTTAAAAAATAAGGTCATAAA  400

seq1  TGTAAGCTTAGTCACTGTGATACTGCTGTAAAGAGACTCTATGACCTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCTTAGTCACTGTGATACTGCTGTAAAGAGACTCTATGACCTATG  450

seq1  AAAGAAAGCATTTAATTGGTACATTGCTGACAGTTTCATAGGCTATTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGCATTTAATTGGTACATTGCTGACAGTTTCATAGGCTATTAGT  500

seq1  CCACTCTCATGGTTGGGGAGCATTGTGGCAGGCAGGCATAGTGTTGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCATGGTTGGGGAGCATTGTGGCAGGCAGGCATAGTGTTGGAGA  550

seq1  GGGAGCTGAGAGCTTACATTCTGATCAGTAAGCAGAGAGCCTAAGCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTGAGAGCTTACATTCTGATCAGTAAGCAGAGAGCCTAAGCCTGA  600

seq1  CATGGCCTTATGAAACCTCCAAGCCCACCCCCCAGTGTCACACTTCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTTATGAAACCTCCAAGCCCACCCCCCAGTGTCACACTTCCTCC  650

seq1  AACAAGGCTGTACCTCTCAATTCTTCCTGCCCTTTCAAACACTTACACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCTGTACCTCTCAATTCTTCCTGCCCTTTCAAACACTTACACTC  700

seq1  CCTGGTGACTAAGCATTCAACTGTATGAGCCCATGAGAAGCATTCTTATC  750
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTGGTGACTAAGCTTTCAACTGTATGAGCCCATGAGAAGCATTCTTATC  750

seq1  CAAACTTCGCCCTGCTCTAGGTTCCTTAGCTTGCTTTGTCTACCTCATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCGCCCTGCTCTAGGTTCCTTAGCTTGCTTTGTCTACCTCATAG  800

seq1  ACACTAATAAAATGTAATTGCTTTTCTAAAAACAAAAACAAAACAACTCA  850
      ||||||||||||||||||||||||||||||||| |||||||| | |||||
seq2  ACACTAATAAAATGTAATTGCTTTTCTAAAAAC-AAAACAAATC-ACTCA  848

seq1  AGGTACCTAATATAACTTAAACTTTAAAAAGTAATTTAAATTTGGTTAAG  900
       ||||||| ||||||||| |||||| |||||| |||||||||||| ||||
seq2  GGGTACCT-ATATAACTT-AACTTT-AAAAGT-ATTTAAATTTGG-TAAG  893

seq1  AAAACAAACTTTACCTGTGTATATAACTTAGATATATAAGGTACCATATC  950
      |||   |||||||||||||||||| |||||||||||| | ||| ||||||
seq2  AAA--CAACTTTACCTGTGTATAT-ACTTAGATATAT-ACGTA-CATATC  938

seq1  TGTGTTTTAGATAGTTTCCTAAGCTTTCATTTAATGTTAGCACTTAAAAT  1000
      |||| ||||||||| ||||| |||||    || ||| |||||||| ||||
seq2  TGTG-TTTAGATAG-TTCCT-AGCTT---CTTTATG-TAGCACTT-AAAT  980

seq1  TGTTTGCTAA  1010
      ||||||||||
seq2  TGTTTGCTAA  990