BAC Information

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BAC

Clone NameB6Ng01-062C17
Chromosome18 (Build37)
Map Location 14,222,040 - 14,352,802
singlet/doubletdoublet
Overlap geneLOC100040094, LOC100040103
Upstream geneEG383354, LOC665379, LOC100040358, Zfp521
Downstream geneLOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062C17.bB6Ng01-062C17.g
ACCDH882648DH882649
length1,1611,113
definitionDH882648|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C17, 5' end.DH882649|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,351,631 - 14,352,802)(14,222,040 - 14,223,175)
sequence
gaattcagaatcaattaagaatccaccaggaaatcagaaccttctgttaa
gctgtaaaatgctttgggatgaaatggtgtcacctgataatattgcacca
gagatgtattgtaaagccagatactccaggccaaatgtctacttccacaa
aagctacaatcccctcactgcatggaacatctcagtgcaggaagaataga
aacaaagagtgattacacacaccttcagcgcttcccctcatcactaatat
ttggagcaaagattcttcacccatatgaatacttgccacgctcccggaga
caggttctgtagtaacaaggaggaggcaggaccgtctggcacctagtcac
gagtatctaatagcaagccttgtcctctattcttaggtgtaattccaaga
tcggtaactatagattaaagtgactgtagactttcagagagtgagggtca
gatgagcccatgtgtggttgaacacaggccagtgtcctgataggctcgca
cacatacctagctgtgggctaagaggaaggtacttacgcctttacagtaa
tgagtaagcagaactatataattgtcacagaaaagaaactgcccagaggg
gatctagcatgtcataaacatgctaaaaagtaacagcacagtttgcagga
atctcctcaccacaggaatttctaaaaagaaactttacctaaggcaggca
gcactattcttactgtaggaaagcaggccattagaagtgcactaatttca
aaaaggacagtcagcactttgccctttgtcagtcagcagtaactgtgggt
atggtgtcctttatgcagcatgtttgagatgcgtctttcgggtaaacacg
cacacgtgctaactaccttttctcattgctattactgacttcctgacgga
aagcagggttcctttcactcgtgggttataggtgtggtctatcagagtga
ggaagggacatcacagcagagcttacaggaagctggtcacattctagtca
tggaaagagacataaacactagcgctgcttggcctactcgttttaccctg
ttcagaccacacctcccggggtggtgtggccacacctccaagtgagtctt
cctgtccagttagccacctctagaactgccttgcgacccatcttgaggga
gagtttgtttc
gaattcaattaattccaggaatctcagaaaccaggtgcgaactctgccgg
atattaaaagattcctaagaggagacccgaggttttgtagcacggttaga
tcaattttcgaggagctggcaaactggcagctgccctggggtagcctgga
cctttccctagctgagccaaatagtttaaatcctttttctcccctgggag
ccagtctgactggagacctctgagtaggctaaggcagtgaggtactcacc
caccctccagctcctggtatgtgtgtacgtgtcccctccaccccatgaag
ttggacaagcacctgtcaccctcagaggagatatttccagctggtgccag
ggctcagcaccagagctgtttcctgtgggtgttggtctggagatggatgg
taaaatgacccatgacagcctgacaccagggctgagagcagcgacagggg
cttaatgcccaagaggcacaggctgaaaacccaggaagaacaatgtcctg
ctgaagtgaagtgttgagtggggactcggcaggggccactcagagggcct
ttaaggactttgtgtccgcatgattagccaagatgaaggggccagctgca
aacgctaatttcctgatgacacaaaggaaccatgaacaatatatagatag
gatttgaatttgtaataagcagtggcttaatccacagcacaggatagtct
gagaagaagaagaagaaagaaaaaaaaaaaacctcgtgaagttcttaggc
ccattcagagcactctttacggaactttcacttgaagcaatttctcttgg
aagagctactagttagctgtgggaaagaaggggcaccttgctggagggcc
ctggcttcctcacagctccagtctctaaagcaaggagacaagcagcgctg
gaataatggcctttgatgcacctggctggaggatgtctggaagaaaagaa
tgagtgcatttatccgctgagaatattttgccgacaccaaccttctgtac
tgaactctggtcttgagtcagtgagttctttttaaacgatgctctccttc
agtttaagaataaaactagagtggtttgtgttgtcgctttcagctgggtg
gattaagttagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_14351631_14352802
seq2: B6Ng01-062C17.b_48_1208 (reverse)

seq1  GAAACAAACTCTCCCTCAAGATGTGTCTGCAAGGCAGTTTCTAGA-GTGG  49
      ||||||||||||||||||||||| ||| ||||||||| ||||||| ||||
seq2  GAAACAAACTCTCCCTCAAGATGGGTC-GCAAGGCAG-TTCTAGAGGTGG  48

seq1  CTAAACTGGACAGGGAAGACTCACTGTGAAGTGTGGGCCACATCCACCCC  99
      || ||||||||| ||||||||||||  || |||| ||||||| |||||||
seq2  CT-AACTGGACA-GGAAGACTCACTTGGAGGTGT-GGCCACA-CCACCCC  94

seq1  GGGGGGTGTGGGTCTTGGACAGGGTAAAAAACGAGTAGGCCAAGCAAGCG  149
      ||| ||||| |||| || |||||||  |||||||||||||||||| ||||
seq2  GGGAGGTGT-GGTC-TGAACAGGGT--AAAACGAGTAGGCCAAGC-AGCG  139

seq1  CTAGTGTTTATGTCTCTGTTCCATGACTAGAATGTGACCAGCTTCCTGTA  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTAGTGTTTATGTCTCT-TTCCATGACTAGAATGTGACCAGCTTCCTGTA  188

seq1  AGCTCTGCTGTGATGTCCCTTCCTCACTCTGATAGACCACACCTATAACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCTGTGATGTCCCTTCCTCACTCTGATAGACCACACCTATAACC  238

seq1  CACGAGTGAAAGGAACCCTGCTTTCCGTCAGGAAGTCAGTAATAGCAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTGAAAGGAACCCTGCTTTCCGTCAGGAAGTCAGTAATAGCAATG  288

seq1  AGAAAAGGTAGTTAGCACGTGTGCGTGTTTACCCGAAAGACGCATCTCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGTAGTTAGCACGTGTGCGTGTTTACCCGAAAGACGCATCTCAA  338

seq1  ACATGCTGCATAAAGGACACCATACCCACAGTTACTGCTGACTGACAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGCATAAAGGACACCATACCCACAGTTACTGCTGACTGACAAAG  388

seq1  GGCAAAGTGCTGACTGTCCTTTTTGAAATTAGTGCACTTCTAATGGCCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTGCTGACTGTCCTTTTTGAAATTAGTGCACTTCTAATGGCCTG  438

seq1  CTTTCCTACAGTAAGAATAGTGCTGCCTGCCTTAGGTAAAGTTTCTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTACAGTAAGAATAGTGCTGCCTGCCTTAGGTAAAGTTTCTTTTT  488

seq1  AGAAATTCCTGTGGTGAGGAGATTCCTGCAAACTGTGCTGTTACTTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCCTGTGGTGAGGAGATTCCTGCAAACTGTGCTGTTACTTTTTA  538

seq1  GCATGTTTATGACATGCTAGATCCCCTCTGGGCAGTTTCTTTTCTGTGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTATGACATGCTAGATCCCCTCTGGGCAGTTTCTTTTCTGTGAC  588

seq1  AATTATATAGTTCTGCTTACTCATTACTGTAAAGGCGTAAGTACCTTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATAGTTCTGCTTACTCATTACTGTAAAGGCGTAAGTACCTTCCT  638

seq1  CTTAGCCCACAGCTAGGTATGTGTGCGAGCCTATCAGGACACTGGCCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCCACAGCTAGGTATGTGTGCGAGCCTATCAGGACACTGGCCTGT  688

seq1  GTTCAACCACACATGGGCTCATCTGACCCTCACTCTCTGAAAGTCTACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACCACACATGGGCTCATCTGACCCTCACTCTCTGAAAGTCTACAG  738

seq1  TCACTTTAATCTATAGTTACCGATCTTGGAATTACACCTAAGAATAGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTAATCTATAGTTACCGATCTTGGAATTACACCTAAGAATAGAGG  788

seq1  ACAAGGCTTGCTATTAGATACTCGTGACTAGGTGCCAGACGGTCCTGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTTGCTATTAGATACTCGTGACTAGGTGCCAGACGGTCCTGCCT  838

seq1  CCTCCTTGTTACTACAGAACCTGTCTCCGGGAGCGTGGCAAGTATTCATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGTTACTACAGAACCTGTCTCCGGGAGCGTGGCAAGTATTCATA  888

seq1  TGGGTGAAGAATCTTTGCTCCAAATATTAGTGATGAGGGGAAGCGCTGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAAGAATCTTTGCTCCAAATATTAGTGATGAGGGGAAGCGCTGAA  938

seq1  GGTGTGTGTAATCACTCTTTGTTTCTATTCTTCCTGCACTGAGATGTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGTAATCACTCTTTGTTTCTATTCTTCCTGCACTGAGATGTTCC  988

seq1  ATGCAGTGAGGGGATTGTAGCTTTTGTGGAAGTAGACATTTGGCCTGGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGAGGGGATTGTAGCTTTTGTGGAAGTAGACATTTGGCCTGGAG  1038

seq1  TATCTGGCTTTACAATACATCTCTGGTGCAATATTATCAGGTGACACCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGCTTTACAATACATCTCTGGTGCAATATTATCAGGTGACACCAT  1088

seq1  TTCATCCCAAAGCATTTTACAGCTTAACAGAAGGTTCTGATTTCCTGGTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCCAAAGCATTTTACAGCTTAACAGAAGGTTCTGATTTCCTGGTG  1138

seq1  GATTCTTAATTGATTCTGAATTC  1172
      |||||||||||||||||||||||
seq2  GATTCTTAATTGATTCTGAATTC  1161

seq1: chr18_14222040_14223175
seq2: B6Ng01-062C17.g_66_1178

seq1  GAATTCAATTAATTCCAGGAATCTCAGAAACCAGGTGCGAACTCTGCCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAATTCCAGGAATCTCAGAAACCAGGTGCGAACTCTGCCGG  50

seq1  ATATTAAAAGATTCCTAAGAGGAGACCCGAGGTTTTGTAGCACGGTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAAGATTCCTAAGAGGAGACCCGAGGTTTTGTAGCACGGTTAGA  100

seq1  TCAATTTTCGAGGAGCTGGCAAACTGGCAGCTGCCCTGGGGTAGCCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTCGAGGAGCTGGCAAACTGGCAGCTGCCCTGGGGTAGCCTGGA  150

seq1  CCTTTCCCTAGCTGAGCCAAATAGTTTAAATCCTTTTTCTCCCCTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCTAGCTGAGCCAAATAGTTTAAATCCTTTTTCTCCCCTGGGAG  200

seq1  CCAGTCTGACTGGAGACCTCTGAGTAGGCTAAGGCAGTGAGGTACTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGACTGGAGACCTCTGAGTAGGCTAAGGCAGTGAGGTACTCACC  250

seq1  CACCCTCCAGCTCCTGGTATGTGTGTACGTGTCCCCTCCACCCCATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCAGCTCCTGGTATGTGTGTACGTGTCCCCTCCACCCCATGAAG  300

seq1  TTGGACAAGCACCTGTCACCCTCAGAGGAGATATTTCCAGCTGGTGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAAGCACCTGTCACCCTCAGAGGAGATATTTCCAGCTGGTGCCAG  350

seq1  GGCTCAGCACCAGAGCTGTTTCCTGTGGGTGTTGGTCTGGAGATGGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCACCAGAGCTGTTTCCTGTGGGTGTTGGTCTGGAGATGGATGG  400

seq1  TAAAATGACCCATGACAGCCTGACACCAGGGCTGAGAGCAGCGACAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGACCCATGACAGCCTGACACCAGGGCTGAGAGCAGCGACAGGGG  450

seq1  CTTAATGCCCAAGAGGCACAGGCTGAAAACCCAGGAAGAACAATGTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGCCCAAGAGGCACAGGCTGAAAACCCAGGAAGAACAATGTCCTG  500

seq1  CTGAAGTGAAGTGTTGAGTGGGGACTCGGCAGGGGCCACTCAGAGGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGAAGTGTTGAGTGGGGACTCGGCAGGGGCCACTCAGAGGGCCT  550

seq1  TTAAGGACTTTGTGTCCGCATGATTAGCCAAGATGAAGGGGCCAGCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGACTTTGTGTCCGCATGATTAGCCAAGATGAAGGGGCCAGCTGCA  600

seq1  AACGCTAATTTCCTGATGACACAAAGGAACCATGAACAATATATAGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTAATTTCCTGATGACACAAAGGAACCATGAACAATATATAGATAG  650

seq1  GATTTGAATTTGTAATAAGCAGTGGCTTAATCCACAGCACAGGATAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAATTTGTAATAAGCAGTGGCTTAATCCACAGCACAGGATAGTCT  700

seq1  GAGAAGAAGAAGAAGAAAG-AAAAAAAAAAACCTCGTGAAGTTCTTAGGC  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGAAGAAGAAGAAGAAAGAAAAAAAAAAAACCTCGTGAAGTTCTTAGGC  750

seq1  CCATTCAGAGCACTCTTTACGGAACTTTCACTTGAAGCAATTTCTCTTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAGAGCACTCTTTACGGAACTTTCACTTGAAGCAATTTCTCTTGG  800

seq1  AAGAGCTACTAGTTAGCTGTGGGAAAGAAGGGGCACCTTGCTGGAGGGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTACTAGTTAGCTGTGGGAAAGAAGGGGCACCTTGCTGGAGGGCC  850

seq1  CTGGCTTCCTCACAGCTCCAGTCTCTTAAGCAAGGAGACAAGCAGCGCTG  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGGCTTCCTCACAGCTCCAGTCTCTAAAGCAAGGAGACAAGCAGCGCTG  900

seq1  GAATAATGGCCTTTGATGCACCTGGCTGGGAGGATGTTCTGGAAGAAAAG  949
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GAATAATGGCCTTTGATGCACCTGGCT-GGAGGATG-TCTGGAAGAAAAG  948

seq1  AATGAGTGCATTTATCCGCTGAGAATATTTTGCCGGACACCAACCTTCTG  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATGAGTGCATTTATCCGCTGAGAATATTTTGCC-GACACCAACCTTCTG  997

seq1  TTACTGAACTCTTGGTCTTGAGTCAGTGAGGGTTCTTTTTTTAAACGATG  1049
       |||||||||| |||||||||||||||||  ||||  |||||||||||||
seq2  -TACTGAACTC-TGGTCTTGAGTCAGTGA--GTTC--TTTTTAAACGATG  1041

seq1  CTCT-CTTCAGTTTTTAGAGATTAAAAACTAGAGTTGGGTTTTTGTTGTT  1098
      |||| |||||||||    ||| | |||||||||||  ||||| |||||| 
seq2  CTCTCCTTCAGTTT---AAGAAT-AAAACTAGAGT--GGTTTGTGTTGTC  1085

seq1  GTCTGGCTTTTCAGCTGGGGTTGGAATTTAAGTTAGCC  1136
      |       |||||||||||  ||||  |||||||||||
seq2  G------CTTTCAGCTGGG--TGGA--TTAAGTTAGCC  1113