BAC Information

Click to search

BAC

Clone NameB6Ng01-062H18
Chromosome18 (Build37)14 (Build37)
Map Location 18,109,881 - 18,110,43950,743,000 - 50,744,184
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062H18.bB6Ng01-062H18.g
ACCDH882866DH882867
length9691,170
definitionDH882866|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H18, 5' end.DH882867|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,109,881 - 18,110,439)(50,743,000 - 50,744,184)
sequence
gaattctctggtgaaatttttggggtcacttatatatactatcatatcac
ctgcaaaaagtgatattttgacttcttcctttgcaatttgtatgcccttg
atctctttttgttgtctaatttctctagataggacttcaatacaatgttg
aataggtagagagagagtggctagccttgtctagttcctaattttagtgg
gattgtttccagcttctcaccatttactttgatgttggctacttgtttgc
tgtagattgcttttataatgtttaggtatgggccttgaattcctgatttt
ccaagagttttatcatgaatgtgtgttggattttgccaaatgctttctca
gcatctaatgagatgatcatgtggtttttgtctttgagcttgtttatata
ctggattacgttgattgatttctgtatattgaaccatccctgcatccctg
ggatgaaacatacttggtcaggatggatgattgttttgatgtgttcttgg
attcggttagagaaaactttattgaggatttttgcatcaatattcataag
ggatattggtctgaagttctctatctttgttgggtcttttgtggtttagg
tatcagagtaattgtgacatcatagaatgagttgggtagagtaccttttg
tttctattttgtggaatagtttgtgaagaactgggattagatcttttttg
aaggtctgatagaactttgcactaaacatatctggtcctgggcttttttt
tggttaggagactattaaagactgcttctatttctttaggggatatatga
ctgtttagatcattaacctgatcttgatttaactttggtacctgatatct
ttctagaaacttgtccatttcatccaatttctccagtttgttgaatattg
ccttttgtagaaggatctgaggttgtttggatttcttaaggatctgttgt
tatgtctcccttttcattt
gaattcaaacaatgtcatgccagattataattatgatattgagcaccaat
gtgaccctgcctgggtctttttaacctgtaagaacttaacaatcttacat
attaaatagttataaaaagaaaaaaaaaataaaaacaaaacccatcaaaa
atgcttcttagatgattactgaggtgagaactctgtgatttctaagaatt
tataattattccttagatacagtgtgttagattagatgtatcctaattta
atataataattattatatgataattttacattgcctggcataaatcacac
taaaatgtgtttacaattagatatgcctataaaaaacagattttcagttc
ttacaatatttaaataaaaatccatctctctgggtatggatgagcacagt
gatcttcgggtcctcaatttttgaaagtttagtgtataattctctctcca
attctcattactcagatattaggactggtagatgaattgagaaagaatat
gtagcctacaagtctcatgaatatttctgtttcacagatgcatctttcac
caacttttaaacattttgtctttttaatttctaactaaagacagatcagg
tatatcacaattgctgttagtggacactgattggtacattgtttttgaag
aaatacagaaaaaaaaaccactttgcttgtataacactgaatggagtatg
tggttaacctataatgtactatactcattaacaaagggaaagaatttagt
tgttgtaaatcacactagagaaaacaaaagcttcactttaaaaagaaaaa
cacccaagtaataggttatttctgtaactacaagtggctgtatttaagtg
aatgaaatgcatctggatgtgggagttctaaggagctgaaggaaaacttt
ggatggtcaagagtctgacatatgacaacaaagtttcaaatattctgtta
tagaaattgccaggaacttagtctaacagtaggtatttttgtgcttctgt
tcaaatactaaattatactttcaagtctttcaaaatttaaacctataaca
tgtcattgcagaatttgtcttcatctgtgttgcatctgtagtgtatattt
actacatgtctaggaaacttctttcttgacttatctataagtcggaaggc
gacgctcgcctccgttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18109881_18110439
seq2: B6Ng01-062H18.b_50_606 (reverse)

seq1  ACCAATATCCCTTCTGAATATTGGTGCAAAAATCCTCAATAAAGTTCTTG  50
      ||||||||||||| ||||||||| |||||||||||||||||||||| |  
seq2  ACCAATATCCCTTATGAATATTGATGCAAAAATCCTCAATAAAGTTTTCT  50

seq1  CTAACCGAATCCAAGAACACATCAAAACAATCTTCCATCCTGACCAAGTA  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTAACCGAATCCAAGAACACATCAAAACAATCATCCATCCTGACCAAGTA  100

seq1  GGTTTCATCCCAGGGATGCAGGGATGGTTCAATATACAGAAATCCATCAA  150
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTTTCATCCCAGGGATGCAGGGATGGTTCAATATACAGAAATCAATCAA  150

seq1  TGTAATCCAGTATATAAACAAACTCAAAGACAAAAACCACATGATCATCT  200
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGTAATCCAGTATATAAACAAGCTCAAAGACAAAAACCACATGATCATCT  200

seq1  CGTTAGATGCTGAGAAAGCATTTGACAAAATCCAACACCCATTCATGATA  250
      | |||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  CATTAGATGCTGAGAAAGCATTTGGCAAAATCCAACACACATTCATGATA  250

seq1  AAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAA  300
      ||| ||||||||| |||||||||||||||||||||||||||||| |||||
seq2  AAACTCTTGGAAA-ATCAGGAATTCAAGGCCCATACCTAAACATTATAAA  299

seq1  AGCAATCTACAGCAAACCAGTAGCCAGCATCAAAGTAAATGGTGAGAAGC  350
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  AGCAATCTACAGCAAACAAGTAGCCAACATCAAAGTAAATGGTGAGAAGC  349

seq1  TTGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGTCCACTCTCT  400
      | ||| ||||||||||||||| ||| |||||||||||||  |||||||||
seq2  TGGAAACAATCCCACTAAAATTAGGAACTAGACAAGGCTAGCCACTCTCT  399

seq1  CCCTACCCATTCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTAGACA  450
      | ||||| ||||||||||||| ||||||||||| | |||| |||||||||
seq2  CTCTACCTATTCAACATTGTA-TTGAAGTCCTATCTAGAGAAATTAGACA  448

seq1  ACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAAGTCAAATTAT  500
      |||||| ||||||||||| |||||||||| |||||||||||||||| |||
seq2  ACAAAAAGAGATCAAGGGCATACAAATTGCAAAGGAAGAAGTCAAAATAT  498

seq1  CACTTTTTGCAGATGATATGATAGTATATATACATGACCCTAAAAATTCC  550
      |||||||||||| |||||||||||||||||||  |||||| ||||||| |
seq2  CACTTTTTGCAGGTGATATGATAGTATATATAAGTGACCCCAAAAATTTC  548

seq1  ACCAGAGAA  559
      |||||||||
seq2  ACCAGAGAA  557

seq1: chr14_50743000_50744184
seq2: B6Ng01-062H18.g_69_1238 (reverse)

seq1  AAAGAAAAGGGAGGCGAGTGCTGCTTTCTGGACTTATAGATAAGTCAGGA  50
      ||||  || ||||||||| |  || |||  ||||||||||||||||| ||
seq2  AAAG--AACGGAGGCGAGCGTCGCCTTC-CGACTTATAGATAAGTCAAGA  47

seq1  AGAGATG-TTCTTATGACATGTAAGTAAATGTATACACTTACAGATGCAA  99
      | ||| | ||| || ||||||| ||||||  ||||||| |||||||||||
seq2  A-AGAAGTTTCCTA-GACATGT-AGTAAA--TATACAC-TACAGATGCAA  91

seq1  CACAGATGAAGACATATTCCTTGCAGATGACATGTTATAGGTTTAAATTT  149
      |||||||||||||| ||||  |||| ||||||||||||||||||||| ||
seq2  CACAGATGAAGACAAATTC--TGCA-ATGACATGTTATAGGTTTAAA-TT  137

seq1  TTGGAAGACTCTGAAAGTTATAATTTAGTATTTTGAACAGAAGCAC-AAA  198
      ||| |||||| |||||| |||||||||||| ||||||||||||||| |||
seq2  TTGAAAGACT-TGAAAG-TATAATTTAGTA-TTTGAACAGAAGCACAAAA  184

seq1  ATACCTACTGTTAGACTAAGTTCCTGGCAATTTCTATAACAGAATTATTT  248
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  ATACCTACTGTTAGACTAAGTTCCTGGCAATTTCTATAACAGAAT--ATT  232

seq1  TGAAACTTTGTTGTCATATGTCAGACTCTTGACCATCC-AAGTTTTCCTT  297
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAAACTTTGTTGTCATATGTCAGACTCTTGACCATCCAAAGTTTTCCTT  282

seq1  CAGCTCCTTAGAACTCCCACATCCAGATGCATTTCATTCACTTAAATACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTTAGAACTCCCACATCCAGATGCATTTCATTCACTTAAATACA  332

seq1  GCCACTTGTAGTTACAGAAATAACCTATTACTTGGGTGTTTTTCTTTTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTGTAGTTACAGAAATAACCTATTACTTGGGTGTTTTTCTTTTTA  382

seq1  AAGTGAAGCTTTTGTTTTCTCTAGTGTGATTTACAACAACTAAATTCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGCTTTTGTTTTCTCTAGTGTGATTTACAACAACTAAATTCTTT  432

seq1  CCCTTTGTTAATGAGTATAGTACATTATAGGTTAACCACATACTCCATTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTTAATGAGTATAGTACATTATAGGTTAACCACATACTCCATTC  482

seq1  AGTGTTATACAAGCAAAGTGGTTTTTTTTTCTGTATTTCTTCAAAAACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTATACAAGCAAAGTGGTTTTTTTTTCTGTATTTCTTCAAAAACAA  532

seq1  TGTACCAATCAGTGTCCACTAACAGCAATTGTGATATACCTGATCTGTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAATCAGTGTCCACTAACAGCAATTGTGATATACCTGATCTGTCT  582

seq1  TTAGTTAGAAATTAAAAAGACAAAATGTTTAAAAGTTGGTGAAAGATGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAGAAATTAAAAAGACAAAATGTTTAAAAGTTGGTGAAAGATGCA  632

seq1  TCTGTGAAACAGAAATATTCATGAGACTTGTAGGCTACATATTCTTTCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAACAGAAATATTCATGAGACTTGTAGGCTACATATTCTTTCTC  682

seq1  AATTCATCTACCAGTCCTAATATCTGAGTAATGAGAATTGGAGAGAGAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCTACCAGTCCTAATATCTGAGTAATGAGAATTGGAGAGAGAAT  732

seq1  TATACACTAAACTTTCAAAAATTGAGGACCCGAAGATCACTGTGCTCATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTAAACTTTCAAAAATTGAGGACCCGAAGATCACTGTGCTCATC  782

seq1  CATACCCAGAGAGATGGATTTTTATTTAAATATTGTAAGAACTGAAAATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCAGAGAGATGGATTTTTATTTAAATATTGTAAGAACTGAAAATC  832

seq1  TGTTTTTTATAGGCATATCTAATTGTAAACACATTTTAGTGTGATTTATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTATAGGCATATCTAATTGTAAACACATTTTAGTGTGATTTATG  882

seq1  CCAGGCAATGTAAAATTATCATATAATAATTATTATATTAAATTAGGATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAATGTAAAATTATCATATAATAATTATTATATTAAATTAGGATA  932

seq1  CATCTAATCTAACACACTGTATCTAAGGAATAATTATAAATTCTTAGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATCTAACACACTGTATCTAAGGAATAATTATAAATTCTTAGAAA  982

seq1  TCACAGAGTTCTCACCTCAGTAATCATCTAAGAAGCATTTTTGATGGGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGTTCTCACCTCAGTAATCATCTAAGAAGCATTTTTGATGGGTT  1032

seq1  TTGTTTTTATTTTTTTTTTCTTTTTATAACTATTTAATATGTAAGATTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTATTTTTTTTTTCTTTTTATAACTATTTAATATGTAAGATTGT  1082

seq1  TAAGTTCTTACAGGTTAAAAAGACCCAGGCAGGGTCACATTGGTGCTCAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTTACAGGTTAAAAAGACCCAGGCAGGGTCACATTGGTGCTCAA  1132

seq1  TATCATAATTATAATCTGGCATGACATTGTTTGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||
seq2  TATCATAATTATAATCTGGCATGACATTGTTTGAATTC  1170