BAC Information

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BAC

Clone NameB6Ng01-063L05
Chromosome18 (Build37)
Map Location 84,093,282 - 84,215,514
singlet/doubletdoublet
Overlap geneTshz1
Upstream geneZfp516, LOC100041001, 4921531P14Rik, LOC665284
Downstream geneZadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063L05.bB6Ng01-063L05.g
ACCDH883713DH883714
length1,082235
definitionDH883713|Mus musculus domesticus DNA, BAC clone: B6Ng01-063L05, 5' end.DH883714|Mus musculus domesticus DNA, BAC clone: B6Ng01-063L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,214,407 - 84,215,514)(84,093,282 - 84,093,516)
sequence
gaattcaaaattacttggcatacctataataaactttctagtcctaaaag
taaaatagatatattttcaaatttattcaagggttattttatttgctgtt
gtctggccctcagttatttattgtgatatttctctttatgaatggagttg
cttttctgttgtatttttagctggttattattgctgtgttactgcgctgt
tgaattttgttttcttcctaattagctttctatattaacagaggctcctg
tttgtctttgtgtgtgatagtacaatctaggttttcttcccttttttttt
tttttttttttttgcctaatgtagcagctattctgttttaagaaaacatg
gtagcttttcaacatctgtgagaatcaatgacaaatagatttttagaaaa
agaaaaaagagagaattagttagtatctttttgttgatgatggtgtcatg
aaatgtctcctgccatgcaaatgtccacctaggagccatgactaagatgt
agatgtttgtgagggattggggcagggtttctcctgcctggtctgggaac
agtgggacacaggtgatgaggacccaaactggagaccctcgcctggtctg
taaaccctgagtgtctagagagtgaaagtttccagagtgtgctggcagga
agaagggttcagacaccacaaattagggagcagaactgcatttgaatata
aaaggtgcccacctgataggggtttgagtctgagtgtcacaaggagcatt
aataatgaaagcctccggttccctcagccttcaggttaaggatgcctctg
ctgttgctccctctgagcgtcactttataaatacttacagttttttcagg
aagtcagcatatctggtggcagtgaataaatcttaaaacctaggatcata
gccgtttgtattctgagcctttatttcctggcgtgcgtgtagttcctgtg
tggctcagccttcttttgtcccaggcttgaagcttgatcatgtctgctga
atatcaattgcttgaatgatttctttgtcatcttcactgaaataaaaata
aatccctcatttattgggtcgcacccccaccc
aaggactgttcagtgtcccccacgctgccgaatgagttcaaagtttggct
tagaaacttaatgagatcctgtctcaaataaaaagtgtatcgggagacag
ctgactggcgggacactgctctagtgcatgaggctctagattcaaacgtc
agtatcagggtaagcaaaaatggaaagatggggaggggaggacagcgcaa
gaggggggagagtgagggagaagatgaggagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_84214407_84215514
seq2: B6Ng01-063L05.b_45_1126 (reverse)

seq1  GGGTGGGGGTGCTGAACCAAATAAAATGAGGGAAATTATTTTATTGTCAG  50
      |||||||||||| || ||||   ||||||||| | |||||||  | ||||
seq2  GGGTGGGGGTGC-GACCCAA--TAAATGAGGG-ATTTATTTTTATTTCAG  46

seq1  TGAAAGATGACCAAAAGAAATCACTCCCAAGCATATCGATATTGCAGCAG  100
      || ||||||||  |||||||||| |  |||||| || |||||| ||||||
seq2  TG-AAGATGAC--AAAGAAATCATT--CAAGCA-ATTGATATT-CAGCAG  89

seq1  ACATGAATACAAGCCTCCAAGGCCCTGGGACAAAAGAAGGCCCTGAGCCC  150
      ||||||   |||| || ||||  |||||||||||||||||  ||||| ||
seq2  ACATGA--TCAAG-CTTCAAG--CCTGGGACAAAAGAAGG--CTGAG-CC  131

seq1  ACACCAGGAACTACACGCACGCCAGGAAAATAAAGGCTCAGAATACAAAC  200
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACA-CAGGAACTACACGCACGCCAGG-AAATAAAGGCTCAGAATACAAAC  179

seq1  GGCTATGATTCCCTAAGTTTTTAAAGATTTATTCACTGCCACCAGATAAT  250
      |||||||||  |||| |||||  |||||||||||||||||||||||| ||
seq2  GGCTATGAT--CCTAGGTTTT--AAGATTTATTCACTGCCACCAGAT-AT  224

seq1  GCTGACTTCCTG-AAAAACTGTAAGTATTTATAAAGTGACGCTCAGAGGA  299
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  GCTGACTTCCTGAAAAAACTGTAAGTATTTATAAAGTGACGCTCAGAGGG  274

seq1  GGCAACAGCAGAGGCATCCCTAACCCTGAAGGCTGAGGGAACCGGAGGCT  349
       |||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  AGCAACAGCAGAGGCATCCTTAA-CCTGAAGGCTGAGGGAACCGGAGGCT  323

seq1  TTCATTATTAATGCTCCTTGTGACACTCAGACTCAAACCCCTATCAGGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATTAATGCTCCTTGTGACACTCAGACTCAAACCCCTATCAGGTG  373

seq1  GGCACCTTTTATATTCAAATGCAGTTCTGCTCCCTAATTTGTGGTGTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTTTTATATTCAAATGCAGTTCTGCTCCCTAATTTGTGGTGTCTG  423

seq1  AACCCTTCTTCCTGCCAGCACACTCTGGAAACTTTCACTCTCTAGACACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCTTCCTGCCAGCACACTCTGGAAACTTTCACTCTCTAGACACT  473

seq1  CAGGGTTTACAGACCAGGCGAGGGTCTCCAGTTTGGGTCCTCATCACCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTACAGACCAGGCGAGGGTCTCCAGTTTGGGTCCTCATCACCTG  523

seq1  TGTCCCACTGTTCCCAGACCAGGCAGGAGAAACCCTGCCCCAATCCCTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCACTGTTCCCAGACCAGGCAGGAGAAACCCTGCCCCAATCCCTCA  573

seq1  CAAACATCTACATCTTAGTCATGGCTCCTAGGTGGACATTTGCATGGCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCTACATCTTAGTCATGGCTCCTAGGTGGACATTTGCATGGCAG  623

seq1  GAGACATTTCATGACACCATCATCAACAAAAAGATACTAACTAATTCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTTCATGACACCATCATCAACAAAAAGATACTAACTAATTCTCT  673

seq1  CTTTTTTCTTTTTCTAAAAATCTATTTGTCATTGATTCTCACAGATGTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTTTTTCTAAAAATCTATTTGTCATTGATTCTCACAGATGTTG  723

seq1  AAAAGCTACCATGTTTTCTTAAAACAGAATAGCTGCTACATTAGGCAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTACCATGTTTTCTTAAAACAGAATAGCTGCTACATTAGGCAAAA  773

seq1  AAAAAAAAAAAAAAAAAAGGGAAGAAAACCTAGATTGTACTATCACACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAGGGAAGAAAACCTAGATTGTACTATCACACAC  823

seq1  AAAGACAAACAGGAGCCTCTGTTAATATAGAAAGCTAATTAGGAAGAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAACAGGAGCCTCTGTTAATATAGAAAGCTAATTAGGAAGAAAA  873

seq1  CAAAATTCAACAGCGCAGTAACACAGCAATAATAACCAGCTAAAAATACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCAACAGCGCAGTAACACAGCAATAATAACCAGCTAAAAATACA  923

seq1  ACAGAAAAGCAACTCCATTCATAAAGAGAAATATCACAATAAATAACTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGCAACTCCATTCATAAAGAGAAATATCACAATAAATAACTGA  973

seq1  GGGCCAGACAACAGCAAATAAAATAACCCTTGAATAAATTTGAAAATATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGACAACAGCAAATAAAATAACCCTTGAATAAATTTGAAAATATA  1023

seq1  TCTATTTTACTTTTAGGACTAGAAAGTTTATTATAGGTATGCCAAGTAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTACTTTTAGGACTAGAAAGTTTATTATAGGTATGCCAAGTAAT  1073

seq1  TTTGAATTC  1108
      |||||||||
seq2  TTTGAATTC  1082

seq1: chr18_84093282_84093516
seq2: B6Ng01-063L05.g_73_307

seq1  AAGGACTGTTCAGTGTCCCCCACGCTGCCGAATGAGTTCAAAGTTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGTTCAGTGTCCCCCACGCTGCCGAATGAGTTCAAAGTTTGGCT  50

seq1  TAGAAACTTAATGAGATCCTGTCTCAAATAAAAAGTGTATCGGGAGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTTAATGAGATCCTGTCTCAAATAAAAAGTGTATCGGGAGACAG  100

seq1  CTGACTGGCGGGACACTGCTCTAGTGCATGAGGCTCTAGATTCAAACGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGCGGGACACTGCTCTAGTGCATGAGGCTCTAGATTCAAACGTC  150

seq1  AGTATCAGGGTAAGCAAAAATGGAAAGATGGGGAGGGGAGGACAGCGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAGGGTAAGCAAAAATGGAAAGATGGGGAGGGGAGGACAGCGCAA  200

seq1  GAGGGGGGAGAGTGAGGGAGAAGATGAGGAGAGGG  235
      |||||||||||||||||||||||||||||||||||
seq2  GAGGGGGGAGAGTGAGGGAGAAGATGAGGAGAGGG  235