BAC Information

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BAC

Clone NameB6Ng01-063P14
Chromosome18 (Build37)
Map Location 34,818,037 - 34,959,358
singlet/doubletdoublet
Overlap geneGfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b
Upstream geneLOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23
Downstream geneReep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063P14.bB6Ng01-063P14.g
ACCDH883903DH883904
length1,1321,099
definitionDH883903|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P14, 5' end.DH883904|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,818,037 - 34,819,178)(34,958,244 - 34,959,358)
sequence
gaattctctaggtagacttacagacttacagagatccactcacctctgct
aggtggattaaaagttgttcaccaccttgcctagaatttctgggtgttat
cttaaaattatttcaaagcaggcttgtagacctacatggtggaagaagaa
aaatcactccccacaagttgtcctctgaactatacatacatacacagaga
gagagagagagtaaataaataagtgtaattattaatcccagcacttggga
ggcagaggcaggcggatttctgtgagttcgaggccagcctggtctacaaa
atgaagtccaggacagccagggctatacaaagaaaccctgtcttgaaaaa
aaacaaaaaacaaacaaacaaaaaccccaaaactacattaccttttcatc
ccttatcaaagaaacttatttttgtaataaacagatactattaaggaaaa
tcacaactaatcaaaagacagagagccagagctctctggtggccagccca
gctgatacagctacagcacagctcctgcacctaaggctctgggatcattg
cagaaggggagcagaaagatcataagagccagagaagtgggaagtttgct
gtgggaattgtgtcttctagaaatgtcaaagatggggactggtgagatgg
ctcagcgggtaagagctctgactgctcttctaaaggtcctgagttcaaat
tccaacagccacatgatggctcacaactacttgtaatgagatctgacacc
ctcttctggtgtgtctgaagacagctatagtgtacttatgtataataata
aataaatctttgggctggggcaagcgtagttgaccagagggagcagaggt
cctaaaaattcaattcccaacaaccacacgaaaggctcacaaccatctgt
acagctacagtgtactcacatacagaaaattagtaaataaatcttaaaaa
aaagaaagaaagaaaagaagggctgagagatggctcagcggttaagagca
ctgacgtctcgacgaagtcctggtcaaatcccagcaccacatggtggctc
acacaaccataatgagatctgatgccccttctggtgtatctgaagacagc
taaaggtactacatataataattaataaataa
gaattcaatggggagctcaatggggcctgattgggggagggaagacagct
tttccttcatttcctcttattagcattatttatcccagtattaactatct
attaaacttgttctgggagaatataaaaagaaagagaccatggcttacac
aattgagagacactgctttaattaaaagggtttgctcaaactaggtcctc
tcttaactagacaaatcatatagtaaacaggaaaaaaccggcagagcgga
gcaacttaagggtatccaggaaaacccagacacaagaaatccacataata
gaattaatacaagctccgcaatctactttgactctattactgtacctcac
tctgtggtgtcgagctgtccatcagcatcacgtgggtgagtctgggatct
actgacttgacctcaccagtctatggtagcaggaaagcagagcacatgaa
aaacaggaaaaaagctatttaataccttgacaaccaagatataatatcat
acatgctccttaacaatataggtatttatttatttttaattctctacaag
atggaaaactttctaagaagagtgatctccaataatagtgctggaaataa
catctacaatagtgcaaacattaatatttgtcaagttaatgaactaaaag
aactgactgagtttaagatctaagtatatctttttaggaatactcactta
aatttctatatctttaagccaacaatcattaaagaggcactcaactatta
aagaaaaaataaaaactttgggagtggggcaatgtgatgtaagtacaaat
ttattgtattttctttgacttagcaatttcacaccaagaaatttacttat
ttttacagacttattttaattatgtggacaaatgtgttgtggtgggatat
gtaatataagagtacaaatggccagaagaaaatgtggatcctttgtaaat
gagctacaaacagctatgagccacccacacaggtgcaggcacaaactcaa
gcacgagtgctctttacagctgacatcttttttccaacacaagttgtctt
tatcaatctttttttttaagatttattttattatatgaaagtaactgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_34818037_34819178
seq2: B6Ng01-063P14.b_48_1179

seq1  GAATTCTCTAGGTAGACTTACAGACTTACAGAGATCCACTCACCTCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGTAGACTTACAGACTTACAGAGATCCACTCACCTCTGCT  50

seq1  AGGTGGATTAAAAGTTGTTCACCACCTTGCCTAGAATTTCTGGGTGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATTAAAAGTTGTTCACCACCTTGCCTAGAATTTCTGGGTGTTAT  100

seq1  CTTAAAATTATTTCAAAGCAGGCTTGTAGACCTACATGGTGGAAGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTATTTCAAAGCAGGCTTGTAGACCTACATGGTGGAAGAAGAA  150

seq1  AAATCACTCCCCACAAGTTGTCCTCTGAACTATACATACATACACAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTCCCCACAAGTTGTCCTCTGAACTATACATACATACACAGAGA  200

seq1  GAGAGAGAGAGTAAATAAATAAGTGTAATTATTAATCCCAGCACTTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGTAAATAAATAAGTGTAATTATTAATCCCAGCACTTGGGA  250

seq1  GGCAGAGGCAGGCGGATTTCTGTGAGTTCGAGGCCAGCCTGGTCTACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGCGGATTTCTGTGAGTTCGAGGCCAGCCTGGTCTACAAA  300

seq1  ATGAAGTCCAGGACAGCCAGGGCTATACAAAGAAACCCTGTCTTGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCCAGGACAGCCAGGGCTATACAAAGAAACCCTGTCTTGAAAAA  350

seq1  AAACAAAAAACAAACAAACAAAAACCCCAAAACTACATTACCTTTTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACAAACAAACAAAAACCCCAAAACTACATTACCTTTTCATC  400

seq1  CCTTATCAAAGAAACTTATTTTTGTAATAAACAGATACTATTAAGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCAAAGAAACTTATTTTTGTAATAAACAGATACTATTAAGGAAAA  450

seq1  TCACAACTAATCAAAAGACAGAGAGCCAGAGCTCTCTGGTGGCCAGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTAATCAAAAGACAGAGAGCCAGAGCTCTCTGGTGGCCAGCCCA  500

seq1  GCTGATACAGCTACAGCACAGCTCCTGCACCTAAGGCTCTGGGATCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATACAGCTACAGCACAGCTCCTGCACCTAAGGCTCTGGGATCATTG  550

seq1  CAGAAGGGGAGCAGAAAGATCATAAGAGCCAGAGAAGTGGGAAGTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGGGAGCAGAAAGATCATAAGAGCCAGAGAAGTGGGAAGTTTGCT  600

seq1  GTGGGAATTGTGTCTTCTAGAAATGTCAAAGATGGGGACTGGTGAGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAATTGTGTCTTCTAGAAATGTCAAAGATGGGGACTGGTGAGATGG  650

seq1  CTCAGCGGGTAAGAGCTCTGACTGCTCTTCTAAAGGTCCTGAGTTCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGGGTAAGAGCTCTGACTGCTCTTCTAAAGGTCCTGAGTTCAAAT  700

seq1  TCCAACAGCCACATGATGGCTCACAACTACTTGTAATGAGATCTGACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAGCCACATGATGGCTCACAACTACTTGTAATGAGATCTGACACC  750

seq1  CTCTTCTGGTGTGTCTGAAGACAGCTATAGTGTACTTATGTATAATAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGTGTGTCTGAAGACAGCTATAGTGTACTTATGTATAATAATA  800

seq1  AATAAATCTTTGGGCTGGGGCAAGCGTAGTTGACCAGAGGGAGCAGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTTGGGCTGGGGCAAGCGTAGTTGACCAGAGGGAGCAGAGGT  850

seq1  CCTAAAAATTCAATTCCCAACAACCACACG-AAGGCTCACAACCATCTGT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTAAAAATTCAATTCCCAACAACCACACGAAAGGCTCACAACCATCTGT  900

seq1  ACAGCTACAGTGTACTCACATACAGAAAATAAGTAAATAAATCTTAAAAA  949
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  ACAGCTACAGTGTACTCACATACAGAAAATTAGTAAATAAATCTT-AAAA  949

seq1  AAAAGAAAGAAAGAAAAAGAAGGGGCTGGAGAGATGGCTCAGCGGTTAAG  999
      ||||||||||||| ||||||| ||||| ||||||||||||||||||||||
seq2  AAAAGAAAGAAAG-AAAAGAA-GGGCT-GAGAGATGGCTCAGCGGTTAAG  996

seq1  AGCACTGACGGTTCTTCCGAACGAAGGTCCTGAGTTCAAATCCCAGCAAC  1049
      ||||||||||  |||  || ||||| |||||  | |||||||||||| ||
seq2  AGCACTGACG--TCT--CG-ACGAA-GTCCT--GGTCAAATCCCAGC-AC  1037

seq1  CACATGGTGGCTCACAACCAACCATAATGAGATCTGATGCCCTCTTCTGG  1099
      ||||||||||||||||  |||||||||||||||||||||||| |||||||
seq2  CACATGGTGGCTCACA--CAACCATAATGAGATCTGATGCCC-CTTCTGG  1084

seq1  TGTATCTGAAGACAGCTAAAGTGTACTTACACATAATAAATAA-------  1142
      ||||||||||||||||||||| |||| |||| ||||||| |||       
seq2  TGTATCTGAAGACAGCTAAAG-GTAC-TACATATAATAATTAATAAATAA  1132

seq1: chr18_34958244_34959358
seq2: B6Ng01-063P14.g_68_1166 (reverse)

seq1  TACAGTGTACTTTCATATAAT-AAATAAATCTTTAAAAAAAAAAAAGAAT  49
      |||||| |||||||||||||| |||||||||||    ||||||||||| |
seq2  TACAGT-TACTTTCATATAATAAAATAAATCTT----AAAAAAAAAGATT  45

seq1  GAATAAAGACAACTTGGTGTGGGAAAAAAAGATGGCTCAGCTGTAAAGAG  99
      | ||||||||||||| |||| || ||||||||||  ||||||||||||||
seq2  G-ATAAAGACAACTT-GTGTTGG-AAAAAAGATG--TCAGCTGTAAAGAG  90

seq1  CACTCGGTGCTTGAGTTTGGTGCCTGGCACCTGTGTTGGGTGGCTCATAG  149
      ||||| |||||||||||| |||||| ||||||||| ||||||||||||||
seq2  CACTC-GTGCTTGAGTTT-GTGCCT-GCACCTGTG-TGGGTGGCTCATAG  136

seq1  CTGTTTGTAGCTCATTTACAAGGGATTCCACATTCTCTTCTGGCCATTTG  199
      ||||||||||||||||||||| ||| |||||||| |||||||||||||||
seq2  CTGTTTGTAGCTCATTTACAAAGGA-TCCACATTTTCTTCTGGCCATTTG  185

seq1  TACTCTTATA-TACATATCCCCACACAACACATTTGTCCACATAATTAAA  248
      |||||||||| ||||||||||  |||||||||||||||||||||||| ||
seq2  TACTCTTATATTACATATCCCACCACAACACATTTGTCCACATAATT-AA  234

seq1  AATAAGTCTGTTAAAAATAAGTAAATTTCTTGGTGTGAAATTGCTAAGTC  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCTG-TAAAAATAAGTAAATTTCTTGGTGTGAAATTGCTAAGTC  283

seq1  AAAGAAAATACAATAAATTTGTACTTACATCACATTGCCCCACTCCCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATACAATAAATTTGTACTTACATCACATTGCCCCACTCCCAAA  333

seq1  GTTTTTATTTTTTCTTTAATAGTTGAGTGCCTCTTTTAATGATTGTTGGC  398
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTTTATTTTTTCTTTAATAGTTGAGTGCCTC-TTTAATGATTGTTGGC  382

seq1  TTAAAGATATAGAAATTTAAGTGAGTATTCCTAAAAAGATATACTTAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATATAGAAATTTAAGTGAGTATTCCTAAAAAGATATACTTAGAT  432

seq1  CTTAAACTCAGTCAGTTCTTTTAGTTCATTAACTTGACAAATATTAATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTCAGTCAGTTCTTTTAGTTCATTAACTTGACAAATATTAATGT  482

seq1  TTGCACTATTGTAGATGTTATTTCCAGCACTATTATTGGAGATCACTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTATTGTAGATGTTATTTCCAGCACTATTATTGGAGATCACTCTT  532

seq1  CTTAGAAAGTTTTCCATCTTGTAGAGAATTAAAAATAAATAAATACCTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAGTTTTCCATCTTGTAGAGAATTAAAAATAAATAAATACCTAT  582

seq1  ATTGTTAAGGAGCATGTATGATATTATATCTTGGTTGTCAAGGTATTAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAAGGAGCATGTATGATATTATATCTTGGTTGTCAAGGTATTAAA  632

seq1  TAGCTTTTTTCCTGTTTTTCATGTGCTCTGCTTTCCTGCTACCATAGACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTTTCCTGTTTTTCATGTGCTCTGCTTTCCTGCTACCATAGACT  682

seq1  GGTGAGGTCAAGTCAGTAGATCCCAGACTCACCCACGTGATGCTGATGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGTCAAGTCAGTAGATCCCAGACTCACCCACGTGATGCTGATGGA  732

seq1  CAGCTCGACACCACAGAGTGAGGTACAGTAATAGAGTCAAAGTAGATTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCGACACCACAGAGTGAGGTACAGTAATAGAGTCAAAGTAGATTGC  782

seq1  GGAGCTTGTATTAATTCTATTATGTGGATTTCTTGTGTCTGGGTTTTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGTATTAATTCTATTATGTGGATTTCTTGTGTCTGGGTTTTCCT  832

seq1  GGATACCCTTAAGTTGCTCCGCTCTGCCGGTTTTTTCCTGTTTACTATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACCCTTAAGTTGCTCCGCTCTGCCGGTTTTTTCCTGTTTACTATAT  882

seq1  GATTTGTCTAGTTAAGAGAGGACCTAGTTTGAGCAAACCCTTTTAATTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTCTAGTTAAGAGAGGACCTAGTTTGAGCAAACCCTTTTAATTAA  932

seq1  AGCAGTGTCTCTCAATTGTGTAAGCCATGGTCTCTTTCTTTTTATATTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTCTCTCAATTGTGTAAGCCATGGTCTCTTTCTTTTTATATTCT  982

seq1  CCCAGAACAAGTTTAATAGATAGTTAATACTGGGATAAATAATGCTAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACAAGTTTAATAGATAGTTAATACTGGGATAAATAATGCTAATA  1032

seq1  AGAGGAAATGAAGGAAAAGCTGTCTTCCCTCCCCCAATCAGGCCCCATTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAATGAAGGAAAAGCTGTCTTCCCTCCCCCAATCAGGCCCCATTG  1082

seq1  AGCTCCCCATTGAATTC  1115
      |||||||||||||||||
seq2  AGCTCCCCATTGAATTC  1099