BAC Information

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BAC

Clone NameB6Ng01-065N10
Chromosome18 (Build37)
Map Location 63,027,953 - 63,184,344
singlet/doubletdoublet
Overlap geneApcdd1, Napg, 9430028L06Rik
Upstream geneAblim3, Sh3tc2, Adrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik
Downstream gene9030411M15Rik, LOC627792, Txnl1, Wdr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065N10.bB6Ng01-065N10.g
ACCDH885196DH885197
length1,048952
definitionDH885196|Mus musculus domesticus DNA, BAC clone: B6Ng01-065N10, 5' end.DH885197|Mus musculus domesticus DNA, BAC clone: B6Ng01-065N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,183,288 - 63,184,344)(63,027,953 - 63,028,905)
sequence
gaattcttcagaattatcctaaggagtagaggggacatttatgtgtcttc
tgttttgagctgttgacttctgtataaggaaatacgccatgccttcacct
tctgtaattctgccttttaggaaattcagccagaacctggtggcacagct
ttggtactttgtgaagtgtgtgtactttgggctgtctgcctatcaaatcc
gctgtggctacccaacccgtgtgctcgggaacttcctcacaaagagctac
aattacgtcaacctcttcttgtttcaagggtgaggacactgtcttgcctg
tcacccgtggaggggacgagatgggaaattggtgtgtgtcttccacaagg
aagcaagggcgtaaggcaccctgaagctcttacaatgttggcaacactca
ctgagtacctgccaggtagtctccctagaattacccagacttggatcatt
ttcacgataggaacttgcctacttaccatgataatgtttggggattaaaa
agtacaaatatccctcttgccgaagctccgggatcaccaaaggagagcat
ggcagaaaggttctaaaagccagaggcagtgggtgtctacaacaaaacag
tattttctggacacagcaaggcagttgtacctatgagctcaccacaattg
taacagcagtatgcacaagacccaaataagatcagcccagacaatgtctc
agcttggagcaagagcacgggtcccttagctgagttgctattggcaattt
gatgacaactgggagactaagactaagtttcttcaagggtgtgggtcctg
ggagactacccatgctccagtagatgatttaaacacacgcttatagagac
tgcactaagttggctccatgagtttaaaaatgaaacaactcatggaattg
ggtgggaaaaattcgatgataaagaggaggaattataggggaagaatgaa
ggtgattaagatgaaacacttaaccgcaaggttggattctcaagcaattg
acaggaagtgaagtaaacatatctagtcttaagctgaatatatttctg
gaattcaccccacatgctttcaaagccttaagcaaatgactggcctggcc
ctgcctggggccctgggtggcattcattccttttgcctcagaacccagct
caggcagtacccacatatcagagggcatcctaagcctcctgaattggcca
taacctttataggatcacagggagagatattaatgggggatctggaaaag
tctggtgaaatgtcaagtgtttagcagtgatctttccatcccagaaaggt
ccactatcatgaaaagagaaaaaaaaaaaaaaaagccctgccgctggcat
cgagccatcccatccctcccacagtgaagttcctggatacacccttacta
tttcagattaaaaggtcctggagctttgtggctggctgggtaatccgctg
ccacacagaccattgtcccacttgaattcgccataaatacagaataagct
ccttccatgagctccccgctttccgagaaggctgaaaaaaactccttggt
aactggggccacttcccatccagggcagagggatttgcaaggctgctccc
tacccccatcccagccacacaaagctagcatgctctctctctctctctct
ctctctctctgtgtgtgtgtgtgtgtgtgtgtgtctgttttgtctctctc
tgtctctctctccaagaacttcatggcaggcagagaaaacacagcaaaag
cacatgatgtttgacattagaatatcgtgagacataggagtctggctagt
tgacaagggttgcactaccacagctaggagttctgcctcctcctccatga
gatatgtcaaagctgcttcctggaaatgctctgaagtcccaagaccccaa
atgtatctgggctcatttgctttttgccaattttttatataaggttttta
attttttttctggaagttcatttttatttataaaagatcgtacgttttta
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_63183288_63184344
seq2: B6Ng01-065N10.b_48_1095 (reverse)

seq1  CAGAAATATATTCATGCTTAAGGACTAGATATGTTTACTTCACTCCCTGT  50
      |||||||||||||| |||||| |||||||||||||||||||||| |||||
seq2  CAGAAATATATTCA-GCTTAA-GACTAGATATGTTTACTTCACTTCCTGT  48

seq1  CTTATTGCTTGAGAAATCCACACTTGCGTATAATGTGATTTCATCTAATT  100
      |  |||||||||| ||||||  ||||||  ||| ||| |||||||| | |
seq2  C-AATTGCTTGAG-AATCCAACCTTGCGGTTAA-GTG-TTTCATCTTAAT  94

seq1  CACCTTTCATTTCCTCCCCTATAATTCCTCCTCTGTATCATCGAATTTTT  150
      |||| |||| ||| |||||||||||||||||||| |||||||||||||||
seq2  CACC-TTCA-TTCTTCCCCTATAATTCCTCCTCTTTATCATCGAATTTTT  142

seq1  CCCACCCAATTCCATGAGTTGTTTCATTTTTAAACTCATGGAGCCAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCAATTCCATGAGTTGTTTCATTTTTAAACTCATGGAGCCAACTT  192

seq1  AGTGCAGTCTCTATAAGCGTGTGTTTAAAATCATCTACTGGAGCATGGGT  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTGCAGTCTCTATAAGCGTGTGTTT-AAATCATCTACTGGAGCATGGGT  241

seq1  AGTCTCCCAGGACCCACACCCTTGAAGAAAACTTAGTCTTAGTCTCCCAG  300
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTCTCCCAGGACCCACACCCTTGAAG-AAACTTAGTCTTAGTCTCCCAG  290

seq1  TTGTCATC-AATTGCCAATAGCAACTCAGCTAAGGGACCCGTGCTCTTGC  349
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCAAATTGCCAATAGCAACTCAGCTAAGGGACCCGTGCTCTTGC  340

seq1  TCCAAGCTGAGACATTGTCTGGGCTGATCTTATTTGGGTCTTGTGCATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTGAGACATTGTCTGGGCTGATCTTATTTGGGTCTTGTGCATAC  390

seq1  TGCTGTTACAATTGTGGTGAGCTCATAGGTACAACTGCCTTGCTGTGTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTACAATTGTGGTGAGCTCATAGGTACAACTGCCTTGCTGTGTCC  440

seq1  AGAAAATACTGTTTTGTTGTAGACACCCACTGCCTCTGGCTTTTAGAACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATACTGTTTTGTTGTAGACACCCACTGCCTCTGGCTTTTAGAACC  490

seq1  TTTCTGCCATGCTCTCCTTTGGTGATCCCGGAGCTTCGGCAAGAGGGATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCATGCTCTCCTTTGGTGATCCCGGAGCTTCGGCAAGAGGGATA  540

seq1  TTTGTACTTTTTAATCCCCAAACATTATCATGGTAAGTAGGCAAGTTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTTTTTAATCCCCAAACATTATCATGGTAAGTAGGCAAGTTCCT  590

seq1  ATCGTGAAAATGATCCAAGTCTGGGTAATTCTAGGGAGACTACCTGGCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGAAAATGATCCAAGTCTGGGTAATTCTAGGGAGACTACCTGGCAG  640

seq1  GTACTCAGTGAGTGTTGCCAACATTGTAAGAGCTTCAGGGTGCCTTACGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCAGTGAGTGTTGCCAACATTGTAAGAGCTTCAGGGTGCCTTACGC  690

seq1  CCTTGCTTCCTTGTGGAAGACACACACCAATTTCCCATCTCGTCCCCTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTCCTTGTGGAAGACACACACCAATTTCCCATCTCGTCCCCTCC  740

seq1  ACGGGTGACAGGCAAGACAGTGTCCTCACCCTTGAAACAAGAAGAGGTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTGACAGGCAAGACAGTGTCCTCACCCTTGAAACAAGAAGAGGTTG  790

seq1  ACGTAATTGTAGCTCTTTGTGAGGAAGTTCCCGAGCACACGGGTTGGGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAATTGTAGCTCTTTGTGAGGAAGTTCCCGAGCACACGGGTTGGGTA  840

seq1  GCCACAGCGGATTTGATAGGCAGACAGCCCAAAGTACACACACTTCACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCGGATTTGATAGGCAGACAGCCCAAAGTACACACACTTCACAA  890

seq1  AGTACCAAAGCTGTGCCACCAGGTTCTGGCTGAATTTCCTAAAAGGCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAAAGCTGTGCCACCAGGTTCTGGCTGAATTTCCTAAAAGGCAGA  940

seq1  ATTACAGAAGGTGAAGGCATGGCGTATTTCCTTATACAGAAGTCAACAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGAAGGTGAAGGCATGGCGTATTTCCTTATACAGAAGTCAACAGC  990

seq1  TCAAAACAGAAGACACATAAATGTCCCCTCTACTCCTTAGGATAATTCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAGAAGACACATAAATGTCCCCTCTACTCCTTAGGATAATTCTG  1040

seq1  AAGAATTC  1057
      ||||||||
seq2  AAGAATTC  1048

seq1: chr18_63027953_63028905
seq2: B6Ng01-065N10.g_68_1019

seq1  GAATTCACCCCACATGCTTTCAAAGCCTTAAGCAAATGACTGGCCTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCACATGCTTTCAAAGCCTTAAGCAAATGACTGGCCTGGCC  50

seq1  CTGCCTGGGGCCCTGGGTGGCATTCATTCCTTTTGCCTCAGAACCCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGGGCCCTGGGTGGCATTCATTCCTTTTGCCTCAGAACCCAGCT  100

seq1  CAGGCAGTACCCACATATCAGAGGGCATCCTAAGCCTCCTGAATTGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTACCCACATATCAGAGGGCATCCTAAGCCTCCTGAATTGGCCA  150

seq1  TAACCTTTATAGGATCACAGGGAGAGATATTAATGGGGGATCTGGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTTATAGGATCACAGGGAGAGATATTAATGGGGGATCTGGAAAAG  200

seq1  TCTGGTGAAATGTCAAGTGTTTAGCAGTGATCTTTCCATCCCAGAAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGAAATGTCAAGTGTTTAGCAGTGATCTTTCCATCCCAGAAAGGT  250

seq1  CCACTATCATGAAAAGAGAAAAAAAAAAAAAAAAGCCCTGCCGCTGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATCATGAAAAGAGAAAAAAAAAAAAAAAAGCCCTGCCGCTGGCAT  300

seq1  CGAGCCATCCCATCCCTCCCACAGTGAAGTTCCTGGATACACCCTTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCATCCCATCCCTCCCACAGTGAAGTTCCTGGATACACCCTTACTA  350

seq1  TTTCAGATTAAAAGGTCCTGGAGCTTTGTGGCTGGCTGGGTAATCCGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATTAAAAGGTCCTGGAGCTTTGTGGCTGGCTGGGTAATCCGCTG  400

seq1  CCACACAGACCATTGTCCCACTTGAATTCGCCATAAATACAGAATAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGACCATTGTCCCACTTGAATTCGCCATAAATACAGAATAAGCT  450

seq1  CCTTCCATGAGCTCCCCGCTTTCCGAGAAGGCTGAAAAAAACTCCTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATGAGCTCCCCGCTTTCCGAGAAGGCTGAAAAAAACTCCTTGGT  500

seq1  AACTGGGGCCACTTCCCATCCAGGGCAGAGGGATTTGCAAGGCTGCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGGCCACTTCCCATCCAGGGCAGAGGGATTTGCAAGGCTGCTCCC  550

seq1  TACCCCCATCCCAGCCACACAAAGCTAGCATGCTCTCTCTCTCTCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCATCCCAGCCACACAAAGCTAGCATGCTCTCTCTCTCTCTCTCT  600

seq1  CTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTCTG-TTTGTCTCTCTC  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTTTGTCTCTCTC  650

seq1  TGTCTCTCTCTCCAAGAACTTCATGGCAGGCAGAGAAAACACAGCAAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCTCCAAGAACTTCATGGCAGGCAGAGAAAACACAGCAAAAG  700

seq1  CACATGATGTTTGACATTAGAATATCGTGAGACATAGGAGTCTGGCTAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATGTTTGACATTAGAATATCGTGAGACATAGGAGTCTGGCTAGT  750

seq1  TGACAAGGGTTGCACTACCACAGCTAGGAGTCCTGCCTCCTCCTCCATGA  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGACAAGGGTTGCACTACCACAGCTAGGAGTTCTGCCTCCTCCTCCATGA  800

seq1  GATAATGTCAAAGCTGCTTCCTGGAAATGCTCTGAAGTCCCCAAGACCCC  849
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAT-ATGTCAAAGCTGCTTCCTGGAAATGCTCTGAAGT-CCCAAGACCCC  848

seq1  AAATGTATCTGGGCTCA-TTGTCTTTTGCCAATTTTT--TATAAGGTTTT  896
      ||||||||||||||||| |||  ||||||||||||||  |||||||||||
seq2  AAATGTATCTGGGCTCATTTGCTTTTTGCCAATTTTTTATATAAGGTTTT  898

seq1  TAATTTTTTTTCTGGTAAAGTTCATTTTTATTTATAAAAGATTCGTACGT  946
      |||||||||||||||  |||||||||||||||||||||||| ||||||||
seq2  TAATTTTTTTTCTGG--AAGTTCATTTTTATTTATAAAAGA-TCGTACGT  945

seq1  TTTTAAA  953
      |||||||
seq2  TTTTAAA  952