BAC Information

Click to search

BAC

Clone NameB6Ng01-066D18
Chromosome18 (Build37)
Map Location 52,793,020 - 52,794,229
singlet/doubletsinglet
Overlap geneZfp474
Upstream geneEG240289, Ftmt, Srfbp1, Lox
Downstream gene1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066D18.bB6Ng01-066D18.g
ACCDH885467DH885468
length1,166557
definitionDH885467|Mus musculus domesticus DNA, BAC clone: B6Ng01-066D18, 5' end.DH885468|Mus musculus domesticus DNA, BAC clone: B6Ng01-066D18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgagttcgaggccagcctggtctacaaagtgagttccaggacag
ctagatctatatagagaaaccctgtctcagaaaacaaaaatacaacaaca
ccaaaaaaaaaaagagggacctggagagataagactcagatcttccagga
ggaagttcctactgatggcagatgctgtccatggggagagctgtggtctt
tcccagtgttttatacaacaaaacagtcatttatgcagtaagaatttatt
ttgtgctgtagcgatgaccattattaaatcattttaaaaacccttaatta
cttttagatttttcatgaataaaactctaaaatatatagatagacatttg
tctcgtgtgaataaagtctaagaacggtactcgggttcatgtaatggggt
ttacacttaactgagcctcaagttcactcacgcctatgctggctcacatc
aagtgttacttggatataaactattccaagatgactcctacggtttcaga
cgttatatgtatgttctaagcatcagtgtcaataaatgtagcacttgtca
agtgggagcaagtctgggacacatgctaagaccttgtctcaaaagaaaaa
agaaactttctcaagtcccatcaatatgttcactaactacaaaggaactc
atagacttttagctgaaaaacctgcctagctaaaagttaggacagcatta
accaggggagttgagcagaatggcttttggtaagtaacccccaccagact
ctgggagggataatacctgctacaagcctccctataagtgactatatttg
tttctcaggtaaggaagaccagagcatacattaggaagctgtactcacac
aagatgcctagagagaatggaggctgccaaacagcataaaagacagaaca
atcaatcaaaccttcttggcctttgaatgggcccattcagatgagcctca
actacttcttatattttgtcccatttggagaatttgggtctgtactatag
aaagtggccatctgtgtgttattatattatttaaaggattaaatagttta
aagacttgtcacacatttgatgcatcgatgcctcttttaagaaacgagta
agcaaaatgctctgatcccacaactctagttcaattgttcttcccttctc
atgacttagaatggaa

actgtgaggagaagggtatggctcctcactgtggagaggagcagagaaat
aaagaatggctgaaccccatttttattctttttccctcttattctactgg
gattcccaccctgtcacattctgggcaagtttctcttccttagttaattc
tatctagaaacaatcacatctggaaagaggattcactaattgcctggtgc
taatgcttcacttaagtggctctcaattaagattaagcatatctgtagat
tttccaagattcataatgttattaactgctggttttttatcatcgtggtc
tgagataatactaagtatgatttcaatccttgtgaatttgttaaggcttg
ctttgtgatatgtactcacttataagtggacattagccataaagtacagg
acaaccatgctacaattcacagacccaaaacaaactgggtgatactgaag
tctcaagggaggattgtgaagcttactcagaaggggaaactaaacagtca
tctgatgtgcatggagagaggaagctgggtaggagaggaggtgaggaggg
gaacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52793020_52794229
seq2: B6Ng01-066D18.b_41_1206

seq1  GAATTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  50

seq1  CTAGATCTATATAGAGAAACCCTGTCTCAGAAAACAAAAATACAACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCTATATAGAGAAACCCTGTCTCAGAAAACAAAAATACAACAACA  100

seq1  CCAAAAAAAAAAAGAGGGACCTGGAGAGATAAGACTCAGATCTTCCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAAAAGAGGGACCTGGAGAGATAAGACTCAGATCTTCCAGGA  150

seq1  GGAAGTTCCTACTGATGGCAGATGCTGTCCATGGGGAGAGCTGTGGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCCTACTGATGGCAGATGCTGTCCATGGGGAGAGCTGTGGTCTT  200

seq1  TCCCAGTGTTTTATACAACAAAACAGTCATTTATGCAGTAAGAATTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGTTTTATACAACAAAACAGTCATTTATGCAGTAAGAATTTATT  250

seq1  TTGTGCTGTAGCGATGACCATTATTAAATCATTTTAAAAACCCTTAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTGTAGCGATGACCATTATTAAATCATTTTAAAAACCCTTAATTA  300

seq1  CTTTTAGATTTTTCATGAATAAAACTCTAAAATATATAGATAGACATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGATTTTTCATGAATAAAACTCTAAAATATATAGATAGACATTTG  350

seq1  TCTCGTGTGAATAAAGTCTAAGAACGGTACTCGGGTTCATGTAATGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTGTGAATAAAGTCTAAGAACGGTACTCGGGTTCATGTAATGGGGT  400

seq1  TTACACTTAACTGAGCCTCAAGTTCACTCACGCCTATGCTGGCTCACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTAACTGAGCCTCAAGTTCACTCACGCCTATGCTGGCTCACATC  450

seq1  AAGTGTTACTTGGATATAAACTATTCCAAGATGACTCCTACGGTTTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTACTTGGATATAAACTATTCCAAGATGACTCCTACGGTTTCAGA  500

seq1  CGTTATATGTATGTTCTAAGCATCAGTGTCAATAAATGTAGCACTTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATATGTATGTTCTAAGCATCAGTGTCAATAAATGTAGCACTTGTCA  550

seq1  AGTGGGAGCAAGTCTGGGACACATGCTAAGACCTTGTCTCAAAAGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGCAAGTCTGGGACACATGCTAAGACCTTGTCTCAAAAGAAAAA  600

seq1  AGAAACTTTCTCAAGTCCCATCAATATGTTCACTAACTACAAAGGAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTTCTCAAGTCCCATCAATATGTTCACTAACTACAAAGGAACTC  650

seq1  ATAGACTTTTAGCTGAAAAACCTGCCTAGCTAAAAGTTAGGACAGCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTTTAGCTGAAAAACCTGCCTAGCTAAAAGTTAGGACAGCATTA  700

seq1  ACCAGGGGAGTTGAGCAGAATGGCTTTTGGTAAGTAACCCCCACCAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGAGTTGAGCAGAATGGCTTTTGGTAAGTAACCCCCACCAGACT  750

seq1  CTGGGAGGGATAATACCTGCTACAAGCCTCCCTATAAGTGACTATATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGGATAATACCTGCTACAAGCCTCCCTATAAGTGACTATATTTG  800

seq1  TTTCTCAGGTAAGGAAGACCAGAGCATACATTAGGAAGCTGTACTCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGGTAAGGAAGACCAGAGCATACATTAGGAAGCTGTACTCACAC  850

seq1  AAGATGCCTAGAGAGAATGGAGGCTGCCAAACAGCATAAAAGACAGAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCCTAGAGAGAATGGAGGCTGCCAAACAGCATAAAAGACAGAACA  900

seq1  ATCAATCAAACCTTCTTGGCCTTTGAATGGGCCCATTCAGGATGAGCCTC  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCAATCAAACCTTCTTGGCCTTTGAATGGGCCCATTCA-GATGAGCCTC  949

seq1  AACTACTTCTTATATTTTTGTCCCATTTGGAGAATTTGGGTTCTGTACTT  1000
      |||||||||||||| ||||||||||||||||||||||||| ||||||| |
seq2  AACTACTTCTTATA-TTTTGTCCCATTTGGAGAATTTGGG-TCTGTAC-T  996

seq1  ATAGAAAGTGGCCATCTTGTGTGTTTATTATATTTATTTTAAAGGATTAA  1050
      |||||||||||||||| |||||| ||||||||||   ||||||||||| |
seq2  ATAGAAAGTGGCCATC-TGTGTG-TTATTATATT--ATTTAAAGGATT-A  1041

seq1  AATAGTTTTAAAAGACTTGGTCACACATTTGATTGCATTCGATGGCCTTC  1100
      ||||||||  |||||||| ||||||||||||| |||| ||||| ||||  
seq2  AATAGTTT--AAAGACTT-GTCACACATTTGA-TGCA-TCGAT-GCCT--  1083

seq1  CTTTTAAAGAACACCGAGTAAAGCAAAAAAATGGGCTCTGGAATCTCACA  1150
      |||||||  ||   ||||| ||||||||      ||||||  ||| ||||
seq2  CTTTTAAGAAA---CGAGT-AAGCAAAA-----TGCTCTG--ATCCCACA  1122

seq1  ACTCTTATGTTCAAATTTGTGTTTCCTTCTCCCTTCTCATGAACCCTAAA  1200
      |||||   ||||||  ||||      |  |||||||||||||   || | 
seq2  ACTCT--AGTTCAA--TTGT------TCTTCCCTTCTCATGA---CTTA-  1158

seq1  GGGAATGGAA  1210
        ||||||||
seq2  --GAATGGAA  1166


| Home | SequenceCutter | Blast | Download |