BAC Information

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BAC

Clone NameB6Ng01-066I12
Chromosome18 (Build37)
Map Location 80,654,973 - 80,846,704
singlet/doubletdoublet
Overlap geneCtdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1
Upstream geneLOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik
Downstream geneAtp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066I12.bB6Ng01-066I12.g
ACCDH885684DH885685
length3901,098
definitionDH885684|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I12, 5' end.DH885685|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,654,973 - 80,655,368)(80,845,602 - 80,846,704)
sequence
aactccttcatggtgacgcccaggttctctttaacatggcctcagatatc
ctcttgttctagacatctaactctaaggcactctacacacacctcttccc
aagagcatgcccccagcagtgttaaccaaaccctttccactcttataggc
tgcagagtaaaaatggaaggcagcaggtccccgtttccacagcgactgtt
tctgaactcttctatcttgaagggccctagtaagtgtgagccaacctgac
acagaagctaatgccaacaggaagagagagagcacttcccgtgccacctg
gcccagcccagacacagctatgtgaagtctgcccacagcagctgactgat
ctgcctcccacatatagggttcccaggaactcacttaaca
gaattccctggtggttgagataccacctttccgcaaccagaggataacca
gccccgtccaagtcagtttctatgtctgcaacgggaaacggaagagaagc
cagtaccagcgtttcacgtaccttcctgccaatggtaactctgtctttct
aaccttaagctctgagagtgagctgagaggaggtttttactgagcagccc
cccgaggctataagaggatgttgttgtaaacaaaacaaaacaaaacaaaa
catacctgtagcctcttcacaccacgtgatagccctattcacaagaccaa
gtcgcccaccccctcaaagaaaagcgaagcctgggtgtgttttcctgtga
ctggtgcatgctggggtcatcacttgctcgccttttgcaaatacagcagc
gcggccaaccaagcagctctgctgcgctcaggggctgatgcggtctgggg
gtgtatatctaacctctgtgagtctttgggttagaagaaagtatttgtca
acgcagttttgtaagtagcttcgaaaataagcctgccgtggtcactgggg
aacatacatgatgttgtcctcatggtgacgcttctacacagcgtgcggtg
tgtctccactgaataatgctgtcccctggtgacgtgagactttcagatgg
aagctcttctgctcgagtttactcatttagggaatggcttctttcattca
gaagtgatcggctcgccttttcaactttctagggtgttttatttacgaaa
ataccgtttttaactgctccccgccccgcaagcttctagaaaggtgtgtc
ccaggcgtccagggttttcctgtgtggtgcaggccatttctcctgcagca
agatgtataaacagagagcagagtcgggttgttatcctgagttctattgt
attttgagtaagctaggctatgtcaacacctttttaaattgctacttttt
ttttctcttaaaacttagatagtcatgtatttaagagggaagttatacaa
taatactagccatgaaagcagccatatttgctatctagtaaaatcacggg
gttttggtggtgtatttttgtttggtttttgatttttagggttcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_80654973_80655368
seq2: B6Ng01-066I12.b_45_440

seq1  GAATTCAACTCCTTCATGGTGACGCCCAGGTTCTCTTTAACATGGCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCTTCATGGTGACGCCCAGGTTCTCTTTAACATGGCCTCA  50

seq1  GATATCCTCTTGTTCTAGACATCTAACTCTAAGGCACTCTACACACACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCTCTTGTTCTAGACATCTAACTCTAAGGCACTCTACACACACCT  100

seq1  CTTCCCAAGAGCATGCCCCCAGCAGTGTTAACCAAACCCTTTCCACTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAAGAGCATGCCCCCAGCAGTGTTAACCAAACCCTTTCCACTCTT  150

seq1  ATAGGCTGCAGAGTAAAAATGGAAGGCAGCAGGTCCCCGTTTCCACAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTGCAGAGTAAAAATGGAAGGCAGCAGGTCCCCGTTTCCACAGCG  200

seq1  ACTGTTTCTGAACTCTTCTATCTTGAAGGGCCCTAGTAAGTGTGAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCTGAACTCTTCTATCTTGAAGGGCCCTAGTAAGTGTGAGCCAA  250

seq1  CCTGACACAGAAGCTAATGCCAACAGGAAGAGAGAGAGCACTTCCCGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACAGAAGCTAATGCCAACAGGAAGAGAGAGAGCACTTCCCGTGC  300

seq1  CACCTGGCCCAGCCCAGACACAGCTATGTGAAGTCTGCCCACAGCAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCCCAGCCCAGACACAGCTATGTGAAGTCTGCCCACAGCAGCTG  350

seq1  ACTGACCTGCCTCCCACATATAGGGTTCCCAGGAACTCACTTAACA  396
      ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCTGCCTCCCACATATAGGGTTCCCAGGAACTCACTTAACA  396

seq1: chr18_80845602_80846704
seq2: B6Ng01-066I12.g_69_1166 (reverse)

seq1  CCTTGAAACCTTAAAAAACAAAAAACAAAACAAAATAACAACAACAAAAC  50
      ||||||| |||  |||||  |||||| ||||||||  ||| || ||||||
seq2  CCTTGAACCCT--AAAAATCAAAAACCAAACAAAAATACACCACCAAAAC  48

seq1  CACCTTGATTTTACTAAGATAGC-AATATGGCTGCTTTCATGGCTAGTAT  99
      | || |||||||||| ||||||| ||||||||||||||||||||||||| 
seq2  C-CCGTGATTTTACT-AGATAGCAAATATGGCTGCTTTCATGGCTAGTA-  95

seq1  TTATTGTATAACTTCCCTCTTAAATTACATGACTATCTTAAGTTTTTAGA  149
      |||||||||||||||||||||||| |||||||||||| |||||||| |||
seq2  TTATTGTATAACTTCCCTCTTAAA-TACATGACTATC-TAAGTTTTAAGA  143

seq1  GGAAAAAAAAAGTAGCAATTTAAAAAGGTTGTTGACATAGCCTAGCTTAC  199
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  -GAAAAAAAAAGTAGCAATTTAAAAAGG-TGTTGACATAGCCTAGCTTAC  191

seq1  TCAAAATACAATAGAACTCAGGATAACAA-CCGACTCTGCTCTCTGTTTA  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCAAAATACAATAGAACTCAGGATAACAACCCGACTCTGCTCTCTGTTTA  241

seq1  TACATCCTGCTGCAGGAG-AATGGCCTGCACCACACAGG-AAACCCTGGA  296
      |||||| ||||||||||| |||||||||||||||||||| ||||||||||
seq2  TACATCTTGCTGCAGGAGAAATGGCCTGCACCACACAGGAAAACCCTGGA  291

seq1  CGCCTGGGACACACCTTTCTAGAAGCTTGCGGGGCGGGGAGCAGTTAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGGGACACACCTTTCTAGAAGCTTGCGGGGCGGGGAGCAGTTAAAA  341

seq1  ACGGTATTTTCGTAAATAAAACACCCTAGAAAGTTGAAAAGGCGAGCCGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTATTTTCGTAAATAAAACACCCTAGAAAGTTGAAAAGGCGAGCCGA  391

seq1  TCACTTCTGAATGAAAGAAGCCATTCCCTAAATGAGTAAACTCGAGCAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTGAATGAAAGAAGCCATTCCCTAAATGAGTAAACTCGAGCAGA  441

seq1  AGAGCTTCCATCTGAAAGTCTCACGTCACCAGGGGACAGCATTATTCAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTCCATCTGAAAGTCTCACGTCACCAGGGGACAGCATTATTCAGT  491

seq1  GGAGACACACCGCACGCTGTGTAGAAGCGTCACCATGAGGACAACATCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACACCGCACGCTGTGTAGAAGCGTCACCATGAGGACAACATCAT  541

seq1  GTATGTTCCCCAGTGACCACGGCAGGCTTATTTTCGAAGCTACTTACAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTCCCCAGTGACCACGGCAGGCTTATTTTCGAAGCTACTTACAAA  591

seq1  ACTGCGTTGACAAATACTTTCTTCTAACCCAAAGACTCACAGAGGTTAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGTTGACAAATACTTTCTTCTAACCCAAAGACTCACAGAGGTTAGA  641

seq1  TATACACCCCCAGACCGCATCAGCCCCTGAGCGCAGCAGAGCTGCTTGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACCCCCAGACCGCATCAGCCCCTGAGCGCAGCAGAGCTGCTTGGT  691

seq1  TGGCCGCGCTGCTGTATTTGCAAAAGGCGAGCAAGTGATGACCCCAGCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGCGCTGCTGTATTTGCAAAAGGCGAGCAAGTGATGACCCCAGCAT  741

seq1  GCACCAGTCACAGGAAAACACACCCAGGCTTCGCTTTTCTTTGAGGGGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGTCACAGGAAAACACACCCAGGCTTCGCTTTTCTTTGAGGGGGT  791

seq1  GGGCGACTTGGTCTTGTGAATAGGGCTATCACGTGGTGTGAAGAGGCTAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGACTTGGTCTTGTGAATAGGGCTATCACGTGGTGTGAAGAGGCTAC  841

seq1  AGGTATGTTTTGTTTTGTTTTGTTTTGTTTACAACAACATCCTCTTATAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGTTTTGTTTTGTTTTGTTTTGTTTACAACAACATCCTCTTATAG  891

seq1  CCTCGGGGGGCTGCTCAGTAAAAACCTCCTCTCAGCTCACTCTCAGAGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGGGGGCTGCTCAGTAAAAACCTCCTCTCAGCTCACTCTCAGAGCT  941

seq1  TAAGGTTAGAAAGACAGAGTTACCATTGGCAGGAAGGTACGTGAAACGCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTAGAAAGACAGAGTTACCATTGGCAGGAAGGTACGTGAAACGCT  991

seq1  GGTACTGGCTTCTCTTCCGTTTCCCGTTGCAGACATAGAAACTGACTTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGCTTCTCTTCCGTTTCCCGTTGCAGACATAGAAACTGACTTGG  1041

seq1  ACGGGGCTGGTTATCCTCTGGTTGCGGAAAGGTGGTATCTCAACCACCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGCTGGTTATCCTCTGGTTGCGGAAAGGTGGTATCTCAACCACCAG  1091

seq1  GGAATTC  1103
      |||||||
seq2  GGAATTC  1098