BAC Information

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BAC

Clone NameB6Ng01-067H18
Chromosome18 (Build37)9 (Build37)
Map Location 74,228,329 - 74,228,51579,767,145 - 79,767,758
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042955, Rkhd2, Smad4, Elac1, Me2, Mro, Mapk4
Downstream gene2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, Dym
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067H18.bB6Ng01-067H18.g
ACCDH886359DH886360
length316614
definitionDH886359|Mus musculus domesticus DNA, BAC clone: B6Ng01-067H18, 5' end.DH886360|Mus musculus domesticus DNA, BAC clone: B6Ng01-067H18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,228,329 - 74,228,515)(79,767,145 - 79,767,758)
sequence
tgaagttaaatcctgtctcatgaggatgatagagaccattaaaaagatat
aaataattcccttaaaaagtataggaaaacacagccaaataggtagaagc
ccttaaagaggaaacaattaaaacccttaaagaaagccgggcggtggtgg
tgcatgcctttaatctcagcacttgggaggcagaggcaggcgaatttctg
agttcgaggccagcctggtctacaaagtgagctccaggacagccagggct
atacagagaagccctgtctcaaaaacaaaaacaaaaacaaaacaaacaaa
aaaaaccttaaagaaa
gaattcctttccttttatgttcatttctttagcagtgtatctgagagagg
aggtagggagggacagaggacgtcactgccgccctatcttttctctcagt
ctgttcttattttcaaattacagcgagctggggacagaatgaaaacgggt
agagactgtccagcttagatgtacccattaagcaagtttgttacagctta
gatccaggttgataaactaagggctaaagatcagacagagtcacatcgga
cgacttctctgctgtctgtgatttcctgttgcatggagctgagtagaaat
accagaagccagatagtgctgcaaagtgcaacatgcttactgtcgacaga
cacagcttgtcaaccccagtcctagatgttcacagaacataaagtgaccc
tgtccctcctgcttaactatatggcagtgcctgaaaccttagctgttaag
ctgtcacagggcagggattcctgccataacactactgggaaggaccgtca
cacacacaagtttgtggcttgtggcttcacgccatccagtgggtaatgtg
tctgaactttatcatcctctcttaacggatgaggaaattgtggcttgggg
gtagggggaggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_74228329_74228515
seq2: B6Ng01-067H18.b_181_368

seq1  AAAGAAAAATATCGCCGGGC-GTGGTGGCGCACTCCTTTAATCCCAGCAC  49
      |||||||      ||||||| ||||||| |||  ||||||||| ||||||
seq2  AAAGAAA------GCCGGGCGGTGGTGGTGCATGCCTTTAATCTCAGCAC  44

seq1  TCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTA  99
      | |||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCGAGGCCAGCCTGGTCTA  94

seq1  CAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAA  149
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAGCCCTGTCTCAA  144

seq1  AAAAAAAACAAAAAACAAAAAAAAAAAAAAA------AAAGAAA  187
      ||| ||||  |||||||||| ||| ||||||      |||||||
seq2  AAACAAAAACAAAAACAAAACAAACAAAAAAAACCTTAAAGAAA  188

seq1: chr9_79767145_79767758
seq2: B6Ng01-067H18.g_67_680 (reverse)

seq1  ACTCCTCCCCCTACCCCCAAGCCACAATTTCCTCATCCGTTAAGAGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCCCCTACCCCCAAGCCACAATTTCCTCATCCGTTAAGAGAGGA  50

seq1  TGATAAAGTTCAGACACATTACCCACTGGATGGCGTGAAGCCACAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGTTCAGACACATTACCCACTGGATGGCGTGAAGCCACAAGCCA  100

seq1  CAAACTTGTGTGTGTGACGGTCCTTCCCAGTAGTGTTATGGCAGGAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGTGTGTGTGACGGTCCTTCCCAGTAGTGTTATGGCAGGAATCC  150

seq1  CTGCCCTGTGACAGCTTAACAGCTAAGGTTTCAGGCACTGCCATATAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTGACAGCTTAACAGCTAAGGTTTCAGGCACTGCCATATAGTT  200

seq1  AAGCAGGAGGGACAGGGTCACTTTATGTTCTGTGAACATCTAGGACTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAGGGACAGGGTCACTTTATGTTCTGTGAACATCTAGGACTGGG  250

seq1  GTTGACAAGCTGTGTCTGTCGACAGTAAGCATGTTGCACTTTGCAGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAAGCTGTGTCTGTCGACAGTAAGCATGTTGCACTTTGCAGCACT  300

seq1  ATCTGGCTTCTGGTATTTCTACTCAGCTCCATGCAACAGGAAATCACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTTCTGGTATTTCTACTCAGCTCCATGCAACAGGAAATCACAGA  350

seq1  CAGCAGAGAAGTCGTCCGATGTGACTCTGTCTGATCTTTAGCCCTTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGAAGTCGTCCGATGTGACTCTGTCTGATCTTTAGCCCTTAGTT  400

seq1  TATCAACCTGGATCTAAGCTGTAACAAACTTGCTTAATGGGTACATCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCTGGATCTAAGCTGTAACAAACTTGCTTAATGGGTACATCTAA  450

seq1  GCTGGACAGTCTCTACCCGTTTTCATTCTGTCCCCAGCTCGCTGTAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACAGTCTCTACCCGTTTTCATTCTGTCCCCAGCTCGCTGTAATTT  500

seq1  GAAAATAAGAACAGACTGAGAGAAAAGATAGGGCGGCAGTGACGTCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGAACAGACTGAGAGAAAAGATAGGGCGGCAGTGACGTCCTCT  550

seq1  GTCCCTCCCTACCTCCTCTCTCAGATACACTGCTAAAGAAATGAACATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCCCTACCTCCTCTCTCAGATACACTGCTAAAGAAATGAACATAA  600

seq1  AAGGAAAGGAATTC  614
      ||||||||||||||
seq2  AAGGAAAGGAATTC  614