BAC Information

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BAC

Clone NameB6Ng01-068E08
Chromosome18 (Build37)
Map Location 73,952,285 - 74,065,003
singlet/doubletdoublet
Overlap geneMe2, Mro
Upstream geneLOC100043411, LOC100042955, Rkhd2, Smad4, Elac1
Downstream geneMapk4, 2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068E08.bB6Ng01-068E08.g
ACCDH886908DH886909
length1,096801
definitionDH886908|Mus musculus domesticus DNA, BAC clone: B6Ng01-068E08, 5' end.DH886909|Mus musculus domesticus DNA, BAC clone: B6Ng01-068E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,952,285 - 73,953,390)(74,064,205 - 74,065,003)
sequence
gaattcaccaaggtagcctgctggtgggtgtcacgtgcatgtgaggagat
gacagaagcaatgacacaggaaacatgaagcacgtgccatgagaacagac
agactgcagagtgaggagccagttcactgctaaggcagtggcacagctaa
gaaaacgccaccttgtccggggaaggcaagtgaaggaggaaggaccagag
gacagcgtgtaagaagacgagcagttcagccttgaatctgccatcgtctt
tacctagagtaaggaactcatttctgagtattttgttgcctgtaatttta
aaagctgagtttgcaagatggcttccagaattttatcccctctggtcaaa
gtgcttgcccattaagcgtgaggactgagtccaaataccaagaataagag
ctgggtccagtgagcatatgtaacccagcctcttacagggacagaatgca
gagcagtagtctctggaagcttgggagccggctagcagcttaaagagtat
gtcagataagagtatatagtagaaaaaacactaagaagatcctgattcac
ggtagaagtagggatggacaccagaggttgtcttttgacctccacatgct
tgacttggcacatgggtcataaatagagatgcacatccatgcacgacaca
cacacacacacacacacacacacacacacacacacacaccccacagacac
acacacacatacaccacaggcaggccataaagatgaagaacctgggtttt
aatctgtggctatagaaaaccattgcaaaaaactacgtaagacaatgcct
attttatatgattaatcctagtgtagatggaaattaactagagagaagct
ggagaagggtttataggaagccgggagagttgaaagaagactgtggtaac
agaagacacgcacttatgcggctgatactgaggaagctctgatggcacgt
ttggctggtaaagaagagccacaaacagcacagattcaagatctggcaat
gggggaacgctactgcactgttagcacttgggaataagagggcaggcagt
ttggaagaatttcatttgaaatagaacaggtgcgtaacggatttct
gaattcctggaaacttgagaaccactctctcttatcctggtgagctttag
ccttggagggggaggactgctggctttagaggaacagtccttaaatgatt
aatgtctctgtgggagttcagcagaaatctagcccaaggctctgcactgg
taaaggagacagatcaggtacaaacgggatgtaaggaagcttttgcaggc
ttttggaaacctactgggcatgtgcaagcccgggtaaagcgtttgtgcct
ctgtaaaagcagcctctaactccttgttacacttccgtttggaaagattg
cgggaagaatgtcatggaggagggaccccaggcatgagcaccatagtcta
tgataaattcacctctggggagcacccaggaggtaagctaaatatattca
tgctggaggctgagataatttctgtagggggaaactctacagaaatgtgg
gggtccaagacagggctctgagtgccaatggagggtctggcagctgtgac
ctggctactgctttcattctgtgtcatgacctacaattgggagaaaaaaa
atttaaccagtttccctcaacacaacacttcattcaccctaccctggaag
aagcacccctagagagcatccatgttattacttcacctagccagggtatc
cctggctttttctgagctccaagcctaccttttttgctgctgggggtttt
ggaaaaggatgtgtgcacataagtatttgaaacagcaggagggttgtgtt
cagtctaggcccctctgaaagctcagacttggggaggaactgggagaaat
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_73952285_73953390
seq2: B6Ng01-068E08.b_47_1142

seq1  GAATTCACCAAGGTAGCCTGCTGGTGGGTGTCACGTGCATGTGAGGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAGGTAGCCTGCTGGTGGGTGTCACGTGCATGTGAGGAGAT  50

seq1  GACAGAAGCAATGACACAGGAAACATGAAGCACGTGCCATGAGAACAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGCAATGACACAGGAAACATGAAGCACGTGCCATGAGAACAGAC  100

seq1  AGACTGCAGAGTGAGGAGCCAGTTCACTGCTAAGGCAGTGGCACAGCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCAGAGTGAGGAGCCAGTTCACTGCTAAGGCAGTGGCACAGCTAA  150

seq1  GAAAACGCCACCTTGTCCGGGGAAGGCAAGTGAAGGAGGAAGGACCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGCCACCTTGTCCGGGGAAGGCAAGTGAAGGAGGAAGGACCAGAG  200

seq1  GACAGCGTGTAAGAAGACGAGCAGTTCAGCCTTGAATCTGCCATCGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCGTGTAAGAAGACGAGCAGTTCAGCCTTGAATCTGCCATCGTCTT  250

seq1  TACCTAGAGTAAGGAACTCATTTCTGAGTATTTTGTTGCCTGTAATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGAGTAAGGAACTCATTTCTGAGTATTTTGTTGCCTGTAATTTTA  300

seq1  AAAGCTGAGTTTGCAAGATGGCTTCCAGAATTTTATCCCCTCTGGTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAGTTTGCAAGATGGCTTCCAGAATTTTATCCCCTCTGGTCAAA  350

seq1  GTGCTTGCCCATTAAGCGTGAGGACTGAGTCCAAATACCAAGAATAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCCCATTAAGCGTGAGGACTGAGTCCAAATACCAAGAATAAGAG  400

seq1  CTGGGTCCAGTGAGCATATGTAACCCAGCCTCTTACAGGGACAGAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCAGTGAGCATATGTAACCCAGCCTCTTACAGGGACAGAATGCA  450

seq1  GAGCAGTAGTCTCTGGAAGCTTGGGAGCCGGCTAGCAGCTTAAAGAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTAGTCTCTGGAAGCTTGGGAGCCGGCTAGCAGCTTAAAGAGTAT  500

seq1  GTCAGATAAGAGTATATAGTAGAAAAAACACTAAGAAGATCCTGATTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATAAGAGTATATAGTAGAAAAAACACTAAGAAGATCCTGATTCAC  550

seq1  GGTAGAAGTAGGGATGGACACCAGAGGTTGTCTTTTGACCTCCACATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAGTAGGGATGGACACCAGAGGTTGTCTTTTGACCTCCACATGCT  600

seq1  TGACTTGGCACATGGGTCATAAATAGAGATGCACATCCATGCACGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGCACATGGGTCATAAATAGAGATGCACATCCATGCACGACACA  650

seq1  CACACACACACACACACACACACACACACACACACACACCCCACAGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACCCCACAGACAC  700

seq1  ACACACACATACACCACAGGCAGGCCATAAAGATGAAGAACCTGGGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATACACCACAGGCAGGCCATAAAGATGAAGAACCTGGGTTTT  750

seq1  AATCTGTGGCTATAGAAAACCATTGCAAAAAACTACGTAAGACAATGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGGCTATAGAAAACCATTGCAAAAAACTACGTAAGACAATGCCT  800

seq1  ATTTTATATGATTAATCCTAGTGTTAGATGGAAATTAACTAGAGAGAAGC  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTTTATATGATTAATCCTAGTG-TAGATGGAAATTAACTAGAGAGAAGC  849

seq1  TGGAGAAGGGTTTATAGGAAGCCGGGAGAGTTGAAAGAAGACTGTGGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGGGTTTATAGGAAGCCGGGAGAGTTGAAAGAAGACTGTGGTAA  899

seq1  CAGAAGACACGCACTTATGCGGCTGATACTGAGGAAGCCCTGATGGCACG  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGAAGACACGCACTTATGCGGCTGATACTGAGGAAGCTCTGATGGCACG  949

seq1  GTTGGCTGGTAAAGAAGAGCCACAAACAGCACCAAGATTCAAGATCTGGC  1000
       |||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  TTTGGCTGGTAAAGAAGAGCCACAAACAGCAC--AGATTCAAGATCTGGC  997

seq1  AATGGGTGAACGCTACTGCCACTGTTAGCACTTGGGAATACAGAGGGCAG  1050
      |||||| ||||||||||| ||||||||||||||||||||| |||||||||
seq2  AATGGGGGAACGCTACTG-CACTGTTAGCACTTGGGAATA-AGAGGGCAG  1045

seq1  GCAGTTTGGAAAGAATTCCATTTGAGATAGAAACAGGATGCGGTAACGGA  1100
      ||||||||| ||||||| ||||||| |||| |||||| ||| ||||||| 
seq2  GCAGTTTGG-AAGAATTTCATTTGAAATAG-AACAGG-TGC-GTAACGG-  1090

seq1  ATTTCT  1106
      ||||||
seq2  ATTTCT  1096

seq1: chr18_74064205_74065003
seq2: B6Ng01-068E08.g_71_871 (reverse)

seq1  CATTTCTCCCAGTTCCTCCCCAAGTCTGAGCTTTCAGAGGGGCCTAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCCCAGTTCCTCCCCAAGTCTGAGCTTTCAGAGGGGCCTAGACT  50

seq1  GAACACAACCCTCCTGCTGTTTCAAATACTTATGTGCACACATCCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAACCCTCCTGCTGTTTCAAATACTTATGTGCACACATCCTTTTC  100

seq1  CAAAACCCCCAGCAGC-AAGAAGGTAGGCTTGGAGCTCAG-AAAAGCCAG  148
      |||||||||||||||| || |||||||||||||||||||| |||||||||
seq2  CAAAACCCCCAGCAGCAAAAAAGGTAGGCTTGGAGCTCAGAAAAAGCCAG  150

seq1  GGATACCCTGGCTAGGTGAAGTAATAACATGGATGCTCTCTAGGGGTGCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACCCTGGCTAGGTGAAGTAATAACATGGATGCTCTCTAGGGGTGCT  200

seq1  TCTTCCAGGGTAGGGTGAATGAAGTGTTGTGTTGAGGGAAACTGGTTAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGGGTAGGGTGAATGAAGTGTTGTGTTGAGGGAAACTGGTTAAA  250

seq1  TTTTTTTTCTCCCAATTGTAGGTCATGACACAGAATGAAAGCAGTAGCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTCCCAATTGTAGGTCATGACACAGAATGAAAGCAGTAGCCA  300

seq1  GGTCACAGCTGCCAGACCCTCCATTGGCACTCAGAGCCCTGTCTTGGACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGCTGCCAGACCCTCCATTGGCACTCAGAGCCCTGTCTTGGACC  350

seq1  CCCACATTTCTGTAGAGTTTCCCCCTACAGAAATTATCTCAGCCTCCAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATTTCTGTAGAGTTTCCCCCTACAGAAATTATCTCAGCCTCCAGC  400

seq1  ATGAATATATTTAGCTTACCTCCTGGGTGCTCCCCAGAGGTGAATTTATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATATTTAGCTTACCTCCTGGGTGCTCCCCAGAGGTGAATTTATC  450

seq1  ATAGACTATGGTGCTCATGCCTGGGGTCCCTCCTCCATGACATTCTTCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTATGGTGCTCATGCCTGGGGTCCCTCCTCCATGACATTCTTCCC  500

seq1  GCAATCTTTCCAAACGGAAGTGTAACAAGGAGTTAGAGGCTGCTTTTACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTTCCAAACGGAAGTGTAACAAGGAGTTAGAGGCTGCTTTTACA  550

seq1  GAGGCACAAACGCTTTACCCGGGCTTGCACATGCCCAGTAGGTTTCCAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACAAACGCTTTACCCGGGCTTGCACATGCCCAGTAGGTTTCCAAA  600

seq1  AGCCTGCAAAAGCTTCCTTACATCCCGTTTGTACCTGATCTGTCTCCTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCAAAAGCTTCCTTACATCCCGTTTGTACCTGATCTGTCTCCTTT  650

seq1  ACCAGTGCAGAGCCTTGGGCTAGATTTCTGCTGAACTCCCACAGAGACAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGCAGAGCCTTGGGCTAGATTTCTGCTGAACTCCCACAGAGACAT  700

seq1  TAATCATTTAAGGACTGTTCCTCTAAAGCCAGCAGTCCTCCCCCTCCAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTTAAGGACTGTTCCTCTAAAGCCAGCAGTCCTCCCCCTCCAAG  750

seq1  GCTAAAGCTCACCAGGATAAGAGAGAGTGGTTCTCAAGATTCCAGGAATT  798
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTAAAGCTCACCAGGATAAGAGAGAGTGGTTCTCAAGTTTCCAGGAATT  800

seq1  C  799
      |
seq2  C  801