BAC Information

Click to search

BAC

Clone NameB6Ng01-069B22
Chromosome18 (Build37)
Map Location 69,667,691 - 69,819,810
singlet/doubletdoublet
Overlap geneTcf4
Upstream geneLOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069B22.bB6Ng01-069B22.g
ACCDH887518DH887519
length8871,045
definitionDH887518|Mus musculus domesticus DNA, BAC clone: B6Ng01-069B22, 5' end.DH887519|Mus musculus domesticus DNA, BAC clone: B6Ng01-069B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,667,691 - 69,668,770)(69,818,752 - 69,819,810)
sequence
gaattcttaatttcttaaattcttaaggtgttgaggtgttgttgggtttc
catttcatttcaacttaaggcattaataaatattttttgcaactatgaag
tcatttaagactgagtacggtcactaatttgttccttggcattgaaatgt
gagttccagtttgggtgtagccttgccatcttgaaaggacttactgacag
ctcaaaggccacataaggtatgcgatgctcttagccatcctttacttgct
gttcgcagcctgcttctgtctgcgatgagccctagtttgcctgagttggg
aatagaatttcatgggggatgaaccctgaaagtcagactgtgttcacaaa
gtgagggtaacccctagaagagggctccctgccggggcacgcagtttccc
cttgcttctaggaaaatgagctcccgtttgcatcctgatgccttatgaag
gcttttggggttttcctagaaatctgaaagccatgctcacctgcagccgg
tgagaatggtagtctgagtggaaccattcttagtttgctcggcttttcct
attgttttaagacgcgtgggatgttaaaaggacagctcattcttggtccc
actccacagtatgaaactgttcaaggacagctaagaagactctgcctcac
tgcattacatggtagacaaacccttgcgagagagaattcttccctgcaac
gagagcaggagtctctataaagaaagtttctcttaaagcagtggggtctg
ttggctcactccattacattttctataataaattcatttgtgtaaatgat
tattatacatctctgagattgtgcgattgaatcagaattatggtagacga
aacttcagagtattgaattggggtgggggggggaatg
gaattcatacgggtctctgttgagaaaaagatttgccagtctgctcttca
tgcacgtgaggagttccgggtttttagggacgcactgcctggtttctaga
aagcaaagaaggtgacaagtcctctattggactcaacaggcacatctctg
gaactacgccaggatctagctggctccacaggaggaatccttggagtgag
aggtaacttttgttaaatcagtagaactctcaactttatgtcttcttttt
tagtaccccagcaaccatatctaagaggtgtctgtgtaatattggccaat
catttgtctttttaaagttgttggccaatcatttgtctttttaaaggtgc
tcacttctattctctctctttactttccattggggtcagttcaacttccc
ctctccaaaaataattctagtgttttttgtctttctcccacccctttttc
ctcctgtcctatctcagaatcaaaggtcaaataattccaaaaaagcaaca
atgtacagtttaatacattaaagaaatgcttagactccatctggtattta
agaataaactacatatttatggaaaagacagtttttacatcaatgtcttg
ggtgcatgccgcatccagctaacttatgcaaagtgaacacagctacagaa
attagtctatttttctcttgattgagagcagatatacataactggttata
aggcgcatatctggattttaataaagccagatttcttaattaaaagcagt
gttgtttaaacactgcagtcagggggaaaaagaaagctgtacaaatgaaa
acctcatattaaatgcatccctagtgtttaacacattacctgaggccagg
ctaaattaaaatctagacttgcctttgtaaactctttagcaactgccaat
gacatgcaacatttttactcagtgatgatttttagggtagaggtcagata
agaaaaagtagggaaaaagtttagcattgcattcaaaaatatctttcaca
tttagagtgagtcactgcttctatttataaactcacatttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69667691_69668770
seq2: B6Ng01-069B22.b_47_933

seq1  GAATTCTTAATTTCTTAAATTCTTAAGGTGTTGAGGTGTTGTTGGGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATTTCTTAAATTCTTAAGGTGTTGAGGTGTTGTTGGGTTTC  50

seq1  CATTTCATTTCAACTTAAGGCATTAATAAATATTTTTTGCAACTATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATTTCAACTTAAGGCATTAATAAATATTTTTTGCAACTATGAAG  100

seq1  TCATTTAAGACTGAGTACGGTCACTAATTTGTTCCTTGGCATTGAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGACTGAGTACGGTCACTAATTTGTTCCTTGGCATTGAAATGT  150

seq1  GAGTTCCAGTTTGGGTGTAGCCTTGCCATCTTGAAAGGACTTACTGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGTTTGGGTGTAGCCTTGCCATCTTGAAAGGACTTACTGACAG  200

seq1  CTCAAAGGCCACATAAGGTATGCGATGCTCTTAGCCATCCTTTACTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGCCACATAAGGTATGCGATGCTCTTAGCCATCCTTTACTTGCT  250

seq1  GTTCGCAGCCTGCTTCTGTCTGCGATGAGCCCTAGTTTGCCTGAGTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCAGCCTGCTTCTGTCTGCGATGAGCCCTAGTTTGCCTGAGTTGGG  300

seq1  AATAGAATTTCATGGGGGATGAACCCTGAAAGTCAGACTGTGTTCACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATTTCATGGGGGATGAACCCTGAAAGTCAGACTGTGTTCACAAA  350

seq1  GTGAGGGTAACCCCTAGAAGAGGGCTCCCTGCCGGGGCACGCAGTTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGTAACCCCTAGAAGAGGGCTCCCTGCCGGGGCACGCAGTTTCCC  400

seq1  CTTGCTTCTAGGAAAATGAGCTCCCGTTTGCATCCTGATGCCTTATGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTAGGAAAATGAGCTCCCGTTTGCATCCTGATGCCTTATGAAG  450

seq1  GCTTTTGGGGTTTTCCTAGAAATCTGAAAGCCATGCTCACCTGCAGCCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGGGTTTTCCTAGAAATCTGAAAGCCATGCTCACCTGCAGCCGG  500

seq1  TGAGAATGGTAGTCTGAGTGGAACCATTCTTAGTTTGCTCGGCTTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGGTAGTCTGAGTGGAACCATTCTTAGTTTGCTCGGCTTTTCCT  550

seq1  ATTGTTTTAAGACGCGTGGGATGTTAAAAGGACAGCTCATTCTTGGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTAAGACGCGTGGGATGTTAAAAGGACAGCTCATTCTTGGTCCC  600

seq1  ACTCCACAGTATGAAACTGTTCAAGGACAGCTAAGAAGACTCTGCCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACAGTATGAAACTGTTCAAGGACAGCTAAGAAGACTCTGCCTCAC  650

seq1  TGCATTACATGGTAGACAAACCCTTGCGAGAGAGAATTCTTCCCTGCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTACATGGTAGACAAACCCTTGCGAGAGAGAATTCTTCCCTGCAAC  700

seq1  GAGAGCAGGAGTCTCTATAAAGAAAGTTTCTCTTAAAGCAGTGGGGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGAGTCTCTATAAAGAAAGTTTCTCTTAAAGCAGTGGGGTCTG  750

seq1  TTGGCTCACTCCATTACATTTTCTATAATAAATTCATTTGTGTAAATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCACTCCATTACATTTTCTATAATAAATTCATTTGTGTAAATGAT  800

seq1  TATTATACATCTCTGAGATTGTGCGATTGAATCAGAATTATGGTAGACGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACATCTCTGAGATTGTGCGATTGAATCAGAATTATGGTAGACGA  850

seq1  AACTTCAGAGTATTGAATTGGGGTGGGGGGGG--ATGCATTGCAAATTTC  898
      ||||||||||||||||||||||||||||||||  |||             
seq2  AACTTCAGAGTATTGAATTGGGGTGGGGGGGGGAATG-------------  887

seq1  GCCTTATTTGTAGGAAATTCTCAAACCAGTTCTCTATACATGGCCCCATG  948
                                                        
seq2  --------------------------------------------------  887

seq1  GAAGGGCTTAGACCACGAAGAGACAACACAGCCTGTGAGCGTCTTTTTGG  998
                                                        
seq2  --------------------------------------------------  887

seq1  TGGTCTGTCATCCCAGTTTTGGGTTCCAGGGACCTTTTAACATTAGTTTT  1048
                                                        
seq2  --------------------------------------------------  887

seq1  CAATACATCATATGAGTGTCATTTTTAGAATG  1080
                                      
seq2  --------------------------------  887

seq1: chr18_69818752_69819810
seq2: B6Ng01-069B22.g_69_1113 (reverse)

seq1  AAAAAAAATGTGAGTTTATAAATAGAAGCAGTGAACTCACTTCTAAAATG  50
      ||||||||||||||||||||||||||||||||| |||||| ||| |||||
seq2  AAAAAAAATGTGAGTTTATAAATAGAAGCAGTG-ACTCAC-TCT-AAATG  47

seq1  TGGAAAGATATTTTTGAATGCCAATGCTAAACCTTTTTTCCCTACTTTTT  100
      | |||||||||||||||||| |||||||||||  ||||||||||||||||
seq2  T-GAAAGATATTTTTGAATG-CAATGCTAAAC--TTTTTCCCTACTTTTT  93

seq1  TCTTTATCTTGACCTCTACCCTAAAAATCCATCACTGAGTAAAAATTGTT  150
         ||||| ||||||||||||||||||| |||||||||||||||||   |
seq2  --CTTATC-TGACCTCTACCCTAAAAAT-CATCACTGAGTAAAAAT--GT  137

seq1  TGCATGTTCATTGGCAGTTGCTAAAGAGTTTACAAAGGCAAGTCTAGATT  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATG-TCATTGGCAGTTGCTAAAGAGTTTACAAAGGCAAGTCTAGATT  186

seq1  TTAATTTAGCCTGGCCTCAGGTAATGTGTTAAACACTAGGGATGCATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTAGCCTGGCCTCAGGTAATGTGTTAAACACTAGGGATGCATTTA  236

seq1  ATATGAGGTTTTCATTTGTACAGCTTTCTTTTTCCCCCTGACTGCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGGTTTTCATTTGTACAGCTTTCTTTTTCCCCCTGACTGCAGTGT  286

seq1  TTAAACAACACTGCTTTTAATTAAGAAATCTGGCTTTATTAAAATCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAACACTGCTTTTAATTAAGAAATCTGGCTTTATTAAAATCCAGA  336

seq1  TATGCGCCTTATAACCAGTTATGTATATCTGCTCTCAATCAAGAGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGCCTTATAACCAGTTATGTATATCTGCTCTCAATCAAGAGAAAAA  386

seq1  TAGACTAATTTCTGTAGCTGTGGTTACTTTGCATAAGTTAGCTGGATGCG  450
      |||||||||||||||||||||| | |||||||||||||||||||||||||
seq2  TAGACTAATTTCTGTAGCTGTGTTCACTTTGCATAAGTTAGCTGGATGCG  436

seq1  GCATGCACCCAAGACATTGATGTAAAAACTGTCTTTTCCATAAATATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACCCAAGACATTGATGTAAAAACTGTCTTTTCCATAAATATGTA  486

seq1  GTTTATTCTTAAATACCAGATGGAGTCTAAGCATTTCTTTAATGTATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCTTAAATACCAGATGGAGTCTAAGCATTTCTTTAATGTATTAA  536

seq1  ACTGTACATTGTTGCTTTTTTGGAATTATTTGACCTTTGATTCTGAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACATTGTTGCTTTTTTGGAATTATTTGACCTTTGATTCTGAGATA  586

seq1  GGACAGGAGGAAAAAGGGGTGGGAGAAAGACAAAAAACACTAGAATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGAGGAAAAAGGGGTGGGAGAAAGACAAAAAACACTAGAATTATT  636

seq1  TTTGGAGAGGGGAAGTTGAACTGACCCCAATGGAAAGTAAAGAGAGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGAGGGGAAGTTGAACTGACCCCAATGGAAAGTAAAGAGAGAGAA  686

seq1  TAGAAGTGAGCACCTTTAAAAAGACAAATGATTGGCCAACAACTTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGAGCACCTTTAAAAAGACAAATGATTGGCCAACAACTTTAAAA  736

seq1  AGACAAATGATTGGCCAATATTACACAGACACCTCTTAGATATGGTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATGATTGGCCAATATTACACAGACACCTCTTAGATATGGTTGCT  786

seq1  GGGGTACTAAAAAAGAAGACATAAAGTTGAGAGTTCTACTGATTTAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACTAAAAAAGAAGACATAAAGTTGAGAGTTCTACTGATTTAACAA  836

seq1  AAGTTACCTCTCACTCCAAGGATTCCTCCTGTGGAGCCAGCTAGATCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCTCTCACTCCAAGGATTCCTCCTGTGGAGCCAGCTAGATCCTG  886

seq1  GCGTAGTTCCAGAGATGTGCCTGTTGAGTCCAATAGAGGACTTGTCACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGTTCCAGAGATGTGCCTGTTGAGTCCAATAGAGGACTTGTCACCT  936

seq1  TCTTTGCTTTCTAGAAACCAGGCAGTGCGTCCCTAAAAACCCGGAACTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTTTCTAGAAACCAGGCAGTGCGTCCCTAAAAACCCGGAACTCC  986

seq1  TCACGTGCATGAAGAGCAGACTGGCAAATCTTTTTCTCAACAGAGACCCG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGCATGAAGAGCAGACTGGCAAATCTTTTTCTCAACAGAGACCCG  1036

seq1  TATGAATTC  1059
      |||||||||
seq2  TATGAATTC  1045