BAC Information

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BAC

Clone NameB6Ng01-069M02
Chromosome18 (Build37)
Map Location 88,442,504 - 88,443,641
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps18_1039.1, LOC329008, LOC100039961
Downstream geneLOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069M02.bB6Ng01-069M02.g
ACCDH887965DH887966
length1,1341,162
definitionDH887965|Mus musculus domesticus DNA, BAC clone: B6Ng01-069M02, 5' end.DH887966|Mus musculus domesticus DNA, BAC clone: B6Ng01-069M02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaccttggccttcaaaaggcaacaattcccaaacaagattaat
tgggaaagtagtgcagtgctaggtcactcaggtgacagtttatggatttg
catttgcaacagtacagtattttacagacacttttaaatactaagaaagg
aaggtcgatgaggtaaatttccagtgatgtaataatagcagcaacagtta
cagcaacagtattgacatgctcaatattttttacaatgacaaaatgtgtc
catggcaaagtttcaatgcctgctgcaattagacaccgttttttattgtt
gctatttttttgaaactagaaactttctgtactcaaggtgtgaaagccta
agaaggtgacatttcactaatgactcctctatgaaattgacaaagatgga
tgtagtgctgttatccatggcccctgagaaacacaatgctttcaaaacga
cattatatctatgggggagggggaaccaagaaaacctaagctctgttttc
ttttgtttatataaaagagagttacatacctcaatcgcagtatgtacatt
tcattttagcctacaaatactcgtttggcacctagttaaacatagagagc
tgattactatttatgtggggtttttttgatctaataaattcagttaggat
tatgcagcatcttacttgagagaatctcagtatgacttactgtcattacc
ttgctggtgttcatctgtataacttactttatatttaaacagtatgtcaa
gtaatgtgagtatcaaatatgtatatgcattatgtatgtattgataaaaa
tttccaacattcatcccaaaatattcaaaatttcaactttttatatttaa
atttttcatatatgaattctgtatgtatattattccttcctctcttttcc
ccattttaactcctcccatgtcacccaagtccctcttaatttcataaaca
ttctttaattaatattgtacacacacacacacacacacacacacacacac
acacacacaacttgcataccaaatacatttagtctctttgtatgtacata
tctactagagctgaccttgggcaaaaataatcaataaaggaataggtcct
tgagaaaacttaacatacatagcatttggtactg
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaataagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacactatg
gagtactactcagctattaaaaagaatgaatttatgatgttcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgttaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagccaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtgatgctcacagtcagctaatggatggatcatagggctcccaa
tggaggagctagagaaagtagccaggagctaaagggatctgcatccttat
agtggacacatatgaactacagtaccccgagctctgactctagctgcata
tatatcaaagatgctagtcgcatcactgcaaagaagcccatggactgcac
ttatatgccagttacagggaaccaggcccaaagggggagtggtgtggcag
gggattgcgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88442504_88443641
seq2: B6Ng01-069M02.b_44_1177 (reverse)

seq1  CAGTACCAAATGCTATGTATGTATAGTTTTCTCCAGGGACCTATTCCTTT  50
      ||||||||||||||||||||||  |||||||| || ||||||||||||||
seq2  CAGTACCAAATGCTATGTATGTTAAGTTTTCT-CAAGGACCTATTCCTTT  49

seq1  ATAGATTATTTTATGCCCAAAGGTCAGCTCTAAGTAAGATATGTACATAC  100
      || ||||||||| ||||| |||||||||||| ||| ||||||||||||||
seq2  ATTGATTATTTT-TGCCC-AAGGTCAGCTCT-AGT-AGATATGTACATAC  95

seq1  AAAGAGACTAAATGTATTTGGTATGCAAGGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAGAGACTAAATGTATTTGGTATGCAAGTTGTGTGTGTGTGTGTGTGTG  145

seq1  TGTGTGTGTGTGTGTGTGTGTAACAATATTAATTAAAGAATG-TTATGAA  199
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  TGTGTGTGTGTGTGTGTGTGT-ACAATATTAATTAAAGAATGTTTATGAA  194

seq1  ATTAAGAGGGACTTGGGTGACATGGGAGGAGTTAAAATGGGGAAAAGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGGGACTTGGGTGACATGGGAGGAGTTAAAATGGGGAAAAGAGA  244

seq1  GGAAGGAATAATATACATACAGAATTCATATATGAAAAATTTAAATATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAATAATATACATACAGAATTCATATATGAAAAATTTAAATATAA  294

seq1  AAAGTTGAAATTTTGAATATTTTGGGATGAATGTTGG-AATTTTTATCAA  348
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAGTTGAAATTTTGAATATTTTGGGATGAATGTTGGAAATTTTTATCAA  344

seq1  TACATACATAATGCATATACATATTTGATACTCACATTACTTGACATACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATAATGCATATACATATTTGATACTCACATTACTTGACATACT  394

seq1  GTTTAAATATAAAGTAAGTTATACAGATGAACACCAGCAAGGTAATGACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATATAAAGTAAGTTATACAGATGAACACCAGCAAGGTAATGACA  444

seq1  GTAAGTCATACTGAGATTCTCTCAAGTAAGATGCTGCATAATCCTAACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCATACTGAGATTCTCTCAAGTAAGATGCTGCATAATCCTAACTG  494

seq1  AATTTATTAGATCAAAAAAACCCCACATAAATAGTAATCAGCTCTCTATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTAGATCAAAAAAACCCCACATAAATAGTAATCAGCTCTCTATG  544

seq1  TTTAACTAGGTGCCAAACGAGTATTTGTAGGCTAAAATGAAATGTACATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTAGGTGCCAAACGAGTATTTGTAGGCTAAAATGAAATGTACATA  594

seq1  CTGCGATTGAGGTATGTAACTCTCTTTTATATAAACAAAAGAAAACAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGATTGAGGTATGTAACTCTCTTTTATATAAACAAAAGAAAACAGAG  644

seq1  CTTAGGTTTTCTTGGTTCCCCCTCCCCCATAGATATAATGTCGTTTTGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTTTTCTTGGTTCCCCCTCCCCCATAGATATAATGTCGTTTTGAA  694

seq1  AGCATTGTGTTTCTCAGGGGCCATGGATAACAGCACTACATCCATCTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTGTTTCTCAGGGGCCATGGATAACAGCACTACATCCATCTTTG  744

seq1  TCAATTTCATAGAGGAGTCATTAGTGAAATGTCACCTTCTTAGGCTTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCATAGAGGAGTCATTAGTGAAATGTCACCTTCTTAGGCTTTCA  794

seq1  CACCTTGAGTACAGAAAGTTTCTAGTTTCAAAAAAATAGCAACAATAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGAGTACAGAAAGTTTCTAGTTTCAAAAAAATAGCAACAATAAAA  844

seq1  AACGGTGTCTAATTGCAGCAGGCATTGAAACTTTGCCATGGACACATTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTGTCTAATTGCAGCAGGCATTGAAACTTTGCCATGGACACATTTT  894

seq1  GTCATTGTAAAAAATATTGAGCATGTCAATACTGTTGCTGTAACTGTTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTAAAAAATATTGAGCATGTCAATACTGTTGCTGTAACTGTTGC  944

seq1  TGCTATTATTACATCACTGGAAATTTACCTCATCGACCTTCCTTTCTTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTATTACATCACTGGAAATTTACCTCATCGACCTTCCTTTCTTAG  994

seq1  TATTTAAAAGTGTCTGTAAAATACTGTACTGTTGCAAATGCAAATCCATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAAGTGTCTGTAAAATACTGTACTGTTGCAAATGCAAATCCATA  1044

seq1  AACTGTCACCTGAGTGACCTAGCACTGCACTACTTTCCCAATTAATCTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCACCTGAGTGACCTAGCACTGCACTACTTTCCCAATTAATCTTG  1094

seq1  TTTGGGAATTGTTGCCTTTTGAAGGCCAAGGTTTGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAATTGTTGCCTTTTGAAGGCCAAGGTTTGAATTC  1134