BAC Information

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BAC

Clone NameB6Ng01-070N06
Chromosome18 (Build37)
Map Location 65,131,057 - 65,274,772
singlet/doubletdoublet
Overlap geneNedd4l
Upstream geneWdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneAlpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070N06.bB6Ng01-070N06.g
ACCDH888704DH888705
length991956
definitionDH888704|Mus musculus domesticus DNA, BAC clone: B6Ng01-070N06, 5' end.DH888705|Mus musculus domesticus DNA, BAC clone: B6Ng01-070N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,131,057 - 65,132,001)(65,274,221 - 65,274,772)
sequence
gaattccatgaccttccatatcactgctcatcagggaaggaagtcaggac
acggactcacacaggacagaaacgtagaggcaggagctgatgcagaggcc
atggaggggtgctgcttactgccttgcttctactggcttgctcagcctgc
tttcttagaacccaggacagctaacccagtgatggcaccacccacaaagt
ggctgacccatcaaattaagtaatttaaaacaaatatcttataggcagat
cttgtggaggcatttacacagttgaggttttctcccttcagataattcta
gttcgtgtgtcaagttgacataagaccggccagcgcaggtggtttggtaa
aacatcctattggttttcgcatttattggtgagcttgatattgtttcctg
gagacacaaacggagacagttctactttgggatcaagactgaggaactaa
acagtccgatcagcggatgggttaatgaactaatagttctgaaaagatga
agtacaaatggctatagacacagaaaaaaaatgttaaacattcttagtca
tagtggccaagcagaataaaacctcaaggagattccttctcaccccagtc
agaatggctgtcatcagaaaatagctggtgaaattgttgggagaaaagag
ggcacacaccccgccctcctcccctccccccccccagctgctgggagtgt
aggttagcccaaccataggaaatcagtgggggactcctcaaaaatcaatg
ctagaaataccacatgacccgggcagaccgtttctggctgtttaaagaat
cctaaatcagcctgtcacacagatactcccacgcccatgtcgactgcagc
tcttagtcacaaaacccaagtcatgtggggatggcggatggaggcataaa
gaaatatgaatatggtacatattcacaatggaggcttatgcagccataaa
gggaaatgaaattgagctgggcagatgactcagtagataag
gaattctatacagggtgggcgttctggacagtgctgacggacagctgaga
cgaaggaacatgtcgtgctgaggaagcacaccggaaaaactttcctgaaa
tcaacatgaggtagcaggagccatttaattaactctaggatggcaaagca
ctgaccttcacagacaaccttgaagtacgcaaggccactcttcctgcaat
tgacaagcaacagcagaagctcccttgtttgtttgtttggtttggttttt
aaggaaggccccaagggcatatttaatgcatgcattctgtcaacaagtat
ttactatgtcattgttatacataataataccaggtagcaagccacctgat
tttggactgaaatggtgaaaacaaaggaacaaaaagacaaagtctgcacc
tcttacccagagaatctttgggtatctttccaattaataacttaattaat
ttttatttttttgtatgtgagtacctgtcactctcttcagacacaccaga
agaggacatcagatcccattacagatggttgtgagccaccatgtggttgc
tgggaattgaactcaggacctctggaagagcagtcagtgctcttaaccgc
tgagccatcaattaatttttttatttattcactttatatcctgctcactg
ccccgtcccagtcatccctcccacaatccttttccccatctccttctcct
ctgagtgggtgggacccccccccctccacgtgtagtccctgtcttagtta
gggttttactgctgtgaatagataccatgaccaaggcaagtcttaaaaca
aaacaaacaaacaaaacaaaacaaacaaacaaacatttaattgggtctag
cttacagtttcagaggttcagtccattattatcaagtgggagcatggcag
catccaggcagcatggcgcagcagagctgagagtctagtcttcatctgaa
gctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65131057_65132001
seq2: B6Ng01-070N06.b_45_988

seq1  GAATTCCATGACCTTCCATATCACTGCTCATCAGGGAAGGAAGTCAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACCTTCCATATCACTGCTCATCAGGGAAGGAAGTCAGGAC  50

seq1  ACGGACTCACACAGGACAGAAACGTAGAGGCAGGAGCTGATGCAGAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACTCACACAGGACAGAAACGTAGAGGCAGGAGCTGATGCAGAGGCC  100

seq1  ATGGAGGGGTGCTGCTTACTGCCTTGCTTCTACTGGCTTGCTCAGCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGGTGCTGCTTACTGCCTTGCTTCTACTGGCTTGCTCAGCCTGC  150

seq1  TTTCTTAGAACCCAGGACAGCTAACCCAGTGATGGCACCACCCACAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGAACCCAGGACAGCTAACCCAGTGATGGCACCACCCACAAAGT  200

seq1  GGCTGACCCATCAAATTAAGTAATTTAAAACAAATATCTTATAGGCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCCATCAAATTAAGTAATTTAAAACAAATATCTTATAGGCAGAT  250

seq1  CTTGTGGAGGCATTTACACAGTTGAGGTTTTCTCCCTTCAGATAATTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGAGGCATTTACACAGTTGAGGTTTTCTCCCTTCAGATAATTCTA  300

seq1  GTTCGTGTGTCAAGTTGACATAAGACCGGCCAGCGCAGGTGGTTTGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTGTGTCAAGTTGACATAAGACCGGCCAGCGCAGGTGGTTTGGTAA  350

seq1  AACATCCTATTGGTTTTCGCATTTATTGGTGAGCTTGATATTGTTTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTATTGGTTTTCGCATTTATTGGTGAGCTTGATATTGTTTCCTG  400

seq1  GAGACACAAACGGAGACAGTTCTACTTTGGGATCAAGACTGAGGAACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACAAACGGAGACAGTTCTACTTTGGGATCAAGACTGAGGAACTAA  450

seq1  ACAGTCCGATCAGCGGATGGGTTAATGAACTAATAGTTCTGAAAAGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCGATCAGCGGATGGGTTAATGAACTAATAGTTCTGAAAAGATGA  500

seq1  AGTACAAATGGCTATAGACACAGAAAAAAAATGTTAAACATTCTTAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAATGGCTATAGACACAGAAAAAAAATGTTAAACATTCTTAGTCA  550

seq1  TAGTGGCCAAGCAGAATAAAACCTCAAGGAGATTCCTTCTCACCCCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCCAAGCAGAATAAAACCTCAAGGAGATTCCTTCTCACCCCAGTC  600

seq1  AGAATGGCTGTCATCAGAAAATAGCTGGTGAAATTGTTGGGAGAAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCTGTCATCAGAAAATAGCTGGTGAAATTGTTGGGAGAAAAGAG  650

seq1  GGCACACACCCCGCCCTCCTCCCCTCCCCCCCCCCAGCTGCTGGGAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACCCCGCCCTCCTCCCCTCCCCCCCCCCAGCTGCTGGGAGTGT  700

seq1  AGGTTAGCCCAACCATAGGAAATCAGTGGGGGACTCCTCAAAAATCAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCCCAACCATAGGAAATCAGTGGGGGACTCCTCAAAAATCAATG  750

seq1  CTAGAAATACCACATGACCCGGGCAGACCGTTTCTGGCTGTTTAAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATACCACATGACCCGGGCAGACCGTTTCTGGCTGTTTAAAGAAT  800

seq1  CCTAAATCAGCCTGTCACACAGATACTCCCACGCCCATGTCGACTGCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCAGCCTGTCACACAGATACTCCCACGCCCATGTCGACTGCAGC  850

seq1  TCTTAGTCACAAAACCCAAGTCATGTGGGGATGGCGGATGGAGGCATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCACAAAACCCAAGTCATGTGGGGATGGCGGATGGAGGCATAAA  900

seq1  GAAAATATGAATATGGTACATATTCACAATGGAGGCTTATGCAGC  945
      | |||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAATATGAATATGGTACATATTCACAATGGAGGCTTATGCAGC  944

seq1: chr18_65274221_65274772
seq2: B6Ng01-070N06.g_68_619 (reverse)

seq1  CAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGTCCT  50

seq1  CTTCTGGTGTGTCTGAAGAGAGTGACAGGTACTCACATACAAAAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTGTGTCTGAAGAGAGTGACAGGTACTCACATACAAAAAAATAA  100

seq1  AAATTAATTAAGTTATTAATTGGAAAGATACCCAAAGATTCTCTGGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTAAGTTATTAATTGGAAAGATACCCAAAGATTCTCTGGGTAA  150

seq1  GAGGTGCAGACTTTGTCTTTTTGTTCCTTTGTTTTCACCATTTCAGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCAGACTTTGTCTTTTTGTTCCTTTGTTTTCACCATTTCAGTCCA  200

seq1  AAATCAGGTGGCTTGCTACCTGGTATTATTATGTATAACAATGACATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGTGGCTTGCTACCTGGTATTATTATGTATAACAATGACATAGT  250

seq1  AAATACTTGTTGACAGAATGCATGCATTAAATATGCCCTTGGGGCCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTGTTGACAGAATGCATGCATTAAATATGCCCTTGGGGCCTTCC  300

seq1  TTAAAAACCAAACCAAACAAACAAACAAGGGAGCTTCTGCTGTTGCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACCAAACCAAACAAACAAACAAGGGAGCTTCTGCTGTTGCTTGT  350

seq1  CAATTGCAGGAAGAGTGGCCTTGCGTACTTCAAGGTTGTCTGTGAAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCAGGAAGAGTGGCCTTGCGTACTTCAAGGTTGTCTGTGAAGGTC  400

seq1  AGTGCTTTGCCATCCTAGAGTTAATTAAATGGCTCCTGCTACCTCATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTGCCATCCTAGAGTTAATTAAATGGCTCCTGCTACCTCATGTT  450

seq1  GATTTCAGGAAAGTTTTTCCGGTGTGCTTCCTCAGCACGACATGTTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGGAAAGTTTTTCCGGTGTGCTTCCTCAGCACGACATGTTCCTT  500

seq1  CGTCTCAGCTGTCCGTCAGCACTGTCCAGAACGCCCACCCTGTATAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCAGCTGTCCGTCAGCACTGTCCAGAACGCCCACCCTGTATAGAAT  550

seq1  TC  552
      ||
seq2  TC  552