BAC Information

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BAC

Clone NameB6Ng01-072M19
Chromosome18 (Build37)
Map Location 53,270,417 - 53,380,892
singlet/doubletdoublet
Overlap geneSnx2, Gm1859
Upstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430
Downstream geneSnx24, Ppic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072M19.bB6Ng01-072M19.g
ACCDH890109DH890110
length1,078410
definitionDH890109|Mus musculus domesticus DNA, BAC clone: B6Ng01-072M19, 5' end.DH890110|Mus musculus domesticus DNA, BAC clone: B6Ng01-072M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,379,811 - 53,380,892)(53,270,417 - 53,270,832)
sequence
tgtcaagactcctttatcaagttccctgtcagaggttgtacaacctctcc
aagggcacacccagatttgggaacaagagcaagtctgccaccaacttagg
tcaacagggcaaatttttccctgctccatacctcaagtaaagctgtgtct
gcctagtgtttactgcaggagacacacctgtttgctcttcagcctcctgt
ataattactacttttagcattttccagactttaaatacagttgaatgtgt
atgagaaaaaaaaaaaaaagaatttggcgtttcttatcagttaaagtatt
taaggaattatagtattaaagatatacttatagaagaaagtatttttcct
attaaaaaaagatccctaacgtgtttatatactcaaataatttattacta
atatttcacaagtaatatcattttattactataatcacaaaaatcataat
ttctgtacaggaatgtataagtgaacattaatcaatgcattgctaatttg
cttcataatgagggtaaacacactacagaacataaaagaaagaagattgt
aaaattttctggccttgcagtgcacttttttagtgcaagtatttaagaca
caatagtgttcaattcagcaaaatattgcagaatgtcatgccacagtcca
cttaattcaaagaaggtcaggacatgcagcttgtaataaaatgtcagcgc
atatgtttttatatataaaaaacccacatgtaattcataaaatatagagt
ggtttatttagatggtttctagatgatctcactggggaatccaatgtctc
cttcacaggggtaaggctaggcaatggctttggcttcaggtaggaatgcc
tcccagtactttatcagctgtgagtgataagaaaaagagatattttcgtt
aatcttttttaccattttaatgcatatatcttttttttaaaattatatac
ataagcagctatactaacttagtctttgtatacatttatacattataact
atatgtggagaggtaccactgtagcctcaggctggccttaacttcagatt
tatgatgcctccagctgctgctggctgg
ccgtctgagagaaacattcttaccaaaccttaaccatcccccaatctttc
tggtacatcccccaatctttctggaggattcctgggcttaaattttccat
caagacttagacttctctgcaaaacccttttagagtgatgtgtcttctgg
ctggcagtgtttgaaagtcaagaaaacaagccttccagggctaacactga
gctaagaaaacattttctgcatgacatttagggccaaatgaggaaccaaa
gtcttcattcttttactcgggactaggtttatgtctccacaggcaatgtg
aaatggagtgtggagaaatgatctcatgaaataaattagtttagacagga
tgcctggcttgtccctattcccactgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_53379811_53380892
seq2: B6Ng01-072M19.b_58_1135 (reverse)

seq1  CCAG-CAGCAGACAGCT-GAGGCATCATAAAATCCTGAAAGTTAAGGCCA  48
      |||| |||||| ||||| |||||||||||||   ||| ||||||||||||
seq2  CCAGCCAGCAG-CAGCTGGAGGCATCATAAA--TCTG-AAGTTAAGGCCA  46

seq1  GCCTGAGCTAACAGTGGTACCTTCTCACATATAGTTAT-ATGTATAAATG  97
      |||||||   ||||||||||||   ||||||||||||| |||||||||||
seq2  GCCTGAGGCTACAGTGGTACCTCTCCACATATAGTTATAATGTATAAATG  96

seq1  TATACAAAGACTAAGTTAGTATTAGCTGCTTATGTATATAATTTTTAAAA  147
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  TATACAAAGACTAAGTTAGTA-TAGCTGCTTATGTATATAA-TTTTAAAA  144

seq1  AAAAGATATATGCATTAAAATGGTAAAAAAAGATTAACGAAAATATCTCT  197
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAAGATATATGCATTAAAATGGT-AAAAAAGATTAACGAAAATATCTCT  193

seq1  TTTTCTTATCACTCACAGCTGATAAAGTACTGGGAGGCATTCCTACCTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATCACTCACAGCTGATAAAGTACTGGGAGGCATTCCTACCTGA  243

seq1  AGCCAAAGCCATTGCCTAGCCTTACCCCTGTGAAGGAGACATTGGATTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGCCATTGCCTAGCCTTACCCCTGTGAAGGAGACATTGGATTCC  293

seq1  CCAGTGAGATCATCTAGAAACCATCTAAATAAACCACTCTATATTTTATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGATCATCTAGAAACCATCTAAATAAACCACTCTATATTTTATG  343

seq1  AATTACATGTGGGTTTTTTATATATAAAAACATATGCGCTGACATTTTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATGTGGGTTTTTTATATATAAAAACATATGCGCTGACATTTTAT  393

seq1  TACAAGCTGCATGTCCTGACCTTCTTTGAATTAAGTGGACTGTGGCATGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCTGCATGTCCTGACCTTCTTTGAATTAAGTGGACTGTGGCATGA  443

seq1  CATTCTGCAATATTTTGCTGAATTGAACACTATTGTGTCTTAAATACTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCAATATTTTGCTGAATTGAACACTATTGTGTCTTAAATACTTG  493

seq1  CACTAAAAAAGTGCACTGCAAGGCCAGAAAATTTTACAATCTTCTTTCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAAAAGTGCACTGCAAGGCCAGAAAATTTTACAATCTTCTTTCTT  543

seq1  TTATGTTCTGTAGTGTGTTTACCCTCATTATGAAGCAAATTAGCAATGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCTGTAGTGTGTTTACCCTCATTATGAAGCAAATTAGCAATGCA  593

seq1  TTGATTAATGTTCACTTATACATTCCTGTACAGAAATTATGATTTTTGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAATGTTCACTTATACATTCCTGTACAGAAATTATGATTTTTGTG  643

seq1  ATTATAGTAATAAAATGATATTACTTGTGAAATATTAGTAATAAATTATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGTAATAAAATGATATTACTTGTGAAATATTAGTAATAAATTATT  693

seq1  TGAGTATATAAACACGTTAGGGATCTTTTTTTAATAGGAAAAATACTTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATATAAACACGTTAGGGATCTTTTTTTAATAGGAAAAATACTTTC  743

seq1  TTCTATAAGTATATCTTTAATACTATAATTCCTTAAATACTTTAACTGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAGTATATCTTTAATACTATAATTCCTTAAATACTTTAACTGAT  793

seq1  AAGAAACGCCAAATTCTTTTTTTTTTTTTTCTCATACACATTCAACTGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACGCCAAATTCTTTTTTTTTTTTTTCTCATACACATTCAACTGTA  843

seq1  TTTAAAGTCTGGAAAATGCTAAAAGTAGTAATTATACAGGAGGCTGAAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTCTGGAAAATGCTAAAAGTAGTAATTATACAGGAGGCTGAAGA  893

seq1  GCAAACAGGTGTGTCTCCTGCAGTAAACACTAGGCAGACACAGCTTTACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGGTGTGTCTCCTGCAGTAAACACTAGGCAGACACAGCTTTACT  943

seq1  TGAGGTATGGAGCAGGGAAAAATTTGCCCTGTTGACCTAAGTTGGTGGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTATGGAGCAGGGAAAAATTTGCCCTGTTGACCTAAGTTGGTGGCA  993

seq1  GACTTGCTCTTGTTCCCAAATCTGGGTGTGCCCTTGGAGAGGTTGTACAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTCTTGTTCCCAAATCTGGGTGTGCCCTTGGAGAGGTTGTACAA  1043

seq1  CCTCTGACAGGGAACTTGATAAAGGAGTCTTGACA  1082
      |||||||||||||||||||||||||||||||||||
seq2  CCTCTGACAGGGAACTTGATAAAGGAGTCTTGACA  1078

seq1: chr18_53270417_53270832
seq2: B6Ng01-072M19.g_69_484

seq1  GAATTCCCGTCTGAGAGAAACATTCTTACCAAACCTTAACCATCCCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGTCTGAGAGAAACATTCTTACCAAACCTTAACCATCCCCCAA  50

seq1  TCTTTCTGGTACATCCCCCAATCTTTCTGGAGGATTCCTGGGCTTAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGTACATCCCCCAATCTTTCTGGAGGATTCCTGGGCTTAAATT  100

seq1  TTCCATCAAGACTTAGACTTCTCTGCAAAACCCTTTTAGAGTGATGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCAAGACTTAGACTTCTCTGCAAAACCCTTTTAGAGTGATGTGTC  150

seq1  TTCTGGCTGGCAGTGTTTGAAAGTCAAGAAAACAAGCCTTCCAGGGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTGGCAGTGTTTGAAAGTCAAGAAAACAAGCCTTCCAGGGCTAA  200

seq1  CACTGAGCTAAGAAAACATTTTCTGCATGACATTTAGGGCCAAATGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCTAAGAAAACATTTTCTGCATGACATTTAGGGCCAAATGAGGA  250

seq1  ACCAAAGTCTTCATTCTTTTACTCGGGACTAGGTTTATGTCTCCACAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTCTTCATTCTTTTACTCGGGACTAGGTTTATGTCTCCACAGGC  300

seq1  AATGTGAAATGGAGTGTGGAGAAATGATCTCATGAAATAAATTAGTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAATGGAGTGTGGAGAAATGATCTCATGAAATAAATTAGTTTAG  350

seq1  ACAGGATGCCTGGCTTGTCCCTATTCCCACTGTGTGTGTGTGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGCCTGGCTTGTCCCTATTCCCACTGTGTGTGTGTGTGTGTGTG  400

seq1  TGTGTGTGTGTGTGTG  416
      ||||||||||||||||
seq2  TGTGTGTGTGTGTGTG  416