BAC Information

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BAC

Clone NameB6Ng01-073I06
Chromosome18 (Build37)
Map Location 3,838,145 - 3,839,245
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273
Downstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073I06.bB6Ng01-073I06.g
ACCDH890621DH890622
length1,2671,090
definitionDH890621|Mus musculus domesticus DNA, BAC clone: B6Ng01-073I06, 5' end.DH890622|Mus musculus domesticus DNA, BAC clone: B6Ng01-073I06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaaacatcagaattctagtacaaaagactatactcaacaaaac
tggaaaacctggttgaaatggacaaacttctagacagataccaggtaccc
aagttaaatcaggatcagattaggatccaaacagtcctatttcctctaaa
gaaatagaatcagttatcaataatctcccaaccaaaaacagcccaggact
agataggtttagtgcagagttctctcagaccttcaaagaagacctaaatc
caattctcctcaaattattccacaaaatagaaacagaaggtactctaccg
aattcattttatggagccacaattactctgatacctaaaccacacaaaga
tccaacaaagaaagagaacttcagaccaatttccattatgaatattgatg
caaaatacataataaaatcgttgcaaaccgaattaaagaacacatcaaaa
cgatcatccatcatggccaagtaggcttcacaccagggatgcagggatgg
tttaacataggaaaatccatcaacgtaatccactatataaacaaactcaa
agacaaaacccacatgagcatctcgttagatgctgagaaagcatttgaca
aaatccaacagcccttcatgataaaagtcatggaaagatcaggaataaat
atgtaaatataataaaagcaatctacagcaaaccagcagccaacatcaaa
ctaaatggagaaaaactcgaagcaaccccactaaaatcaggtagtagaca
aggctgcccaattttcccctacctattcaatatagtacttgaagtcctag
ccagagcaattagacaacaaaaggagataaaggggatacaaattggaaag
gaaaatgtcaaaatatcactatttgcagatgatatgatagtatataaagt
gaccctaaaaattccaccagagaactccttcagtgcagtagctggatata
aaattaactcaaacaaatcaatggcctttctctacacaagaattaaatag
gctcagaaaggagtagggaacaacatccttcaaatagtcaaaataatata
aattctaggatgactctactagaaagtgaaaattttatttgatagactga
gaataaaacctagatgcaaactttttctcaacaataaagaacctcagtgt
ggaatcaccatgctgaaccaagctgttctccagagccatggttaactgca
tgtatactctgatgacgcagaacaggtatatatcctatgaaatgaatgtg
aaaaccggaaatatatc
gaattcacgatcctgaaaaaagtatgttggatgtctctgcaaacacttgg
tcattgttttctgtagagaacacatggtactattgattttattagcaaac
caagtaaaccggacttactcaggcagcacattgaggcctagtacagagtc
tataagaatgagatagaaggcatgtatacacctgttaaggttttggagta
aggagggaaaaggagtatttatctatggcttattgaatgactgtgttttg
agcatattatattcatttaagccttgaaataactgcccctaccacatcca
agttaagacctatgtagccacgtcccagaacactagatggttcagtaagt
gggttaagtcagacagctggtaaaggactagaacctggaaaaatggtccc
agaaccacctcataacaatggtaatatagtgggactgctgatatgtaatg
gtcccagaaatccacccttgtgagactccagtaaaaactccctcctcact
agtatatgtttgccaagggtggctcatagcacatactgctacagaaatgc
ccacggaattagaacaaattcctggtcctacaaacagggaggaaaaatcg
gtcttctcagtggactgaggtctcagacaacaagcttaaggtatcttctt
agctaaaatacaggtgaggggagaaagttggagacttgggcactgttagg
ttgctaaaacttaattgttttatctttcaactaatatcacatctggatac
atagagaaagtcctgggcttctagacaatgtgcagccagaataagagaat
gaccacaaagctctttcatgagtttttccacagtcctggctctaacctaa
caaaaattggccaaatctgtcttcacatccagagtcagactccctagtat
cataaccaagagcttacttatttactctcattccatcgaagtctacatac
atttgtggtctacttacagtgagcatacctgtggctaatcttctgtcagg
acagcatggttggtttgtgaatgtgaatagaacccaggcgatccagggct
ccggtgtacaggttagaactaaccctgggtgacaccctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_3838145_3839245
seq2: B6Ng01-073I06.g_70_1159 (reverse)

seq1  TGAGGGTGTCACCCAGGGGTATAGTCCTAACCTTGTACACAGGAAGCCCT  50
      ||||||||||||||||||   |||| |||||| ||||||| || ||||||
seq2  TGAGGGTGTCACCCAGGG--TTAGTTCTAACC-TGTACACCGG-AGCCCT  46

seq1  GGGTTCTGCCCTGGGTTCTATTCCAACA-TCACAAACCAAACCATGCTGT  99
      ||    |  ||||||||||||||  ||| ||||||||| |||||||||||
seq2  GG---ATCGCCTGGGTTCTATTC--ACATTCACAAACC-AACCATGCTGT  90

seq1  CCTGACAGAAGATTAGCCAACAGTATGCTCACTGTAAGTAAGACCACAAA  149
      |||||||||||||||||||   ||||||||||||||||| ||||||| ||
seq2  CCTGACAGAAGATTAGCCACAGGTATGCTCACTGTAAGT-AGACCAC-AA  138

seq1  ATGTATGTAGACTTCGATGGAATGAGAGTAAAATAAGTGAAGCTCTTGGT  199
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  ATGTATGTAGACTTCGATGGAATGAGAGT-AAATAAGT-AAGCTCTTGGT  186

seq1  TATGATACTAGGGAGTCTGACTCTGGATGTGAAGACAGATTTGGCCAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATACTAGGGAGTCTGACTCTGGATGTGAAGACAGATTTGGCCAATT  236

seq1  TTTGTTAGGTTAGAGCCAGGACTGTGG-AAAACTCATGAAAGAGCTTTGT  298
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGTTAGGTTAGAGCCAGGACTGTGGAAAAACTCATGAAAGAGCTTTGT  286

seq1  GGTCATTCTCTTATTCTGGCTGCACATTGTCTAGAAGCCCAGGACTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTCTCTTATTCTGGCTGCACATTGTCTAGAAGCCCAGGACTTTCT  336

seq1  CTATGTATCCAGATGTGATATTAGTTGAAAGAT-AAACAATTAAGTTTTA  397
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTATGTATCCAGATGTGATATTAGTTGAAAGATAAAACAATTAAGTTTTA  386

seq1  GCAACCTAACAGTGCCCAAGTCTCCAACTTTCTCCCCTCACCTGTATTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTAACAGTGCCCAAGTCTCCAACTTTCTCCCCTCACCTGTATTTT  436

seq1  AGCTAAGAAGATACCTTAAGCTTGTTGTCTGAGACCTCAGTCCACTGAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGAAGATACCTTAAGCTTGTTGTCTGAGACCTCAGTCCACTGAGA  486

seq1  AGACCGATTTTTCCTCCCTGTTTGTAGGACCAGGAATTTGTTCTAATTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGATTTTTCCTCCCTGTTTGTAGGACCAGGAATTTGTTCTAATTCC  536

seq1  GTGGGCATTTCTGTAGCAGTATGTGCTATGAGCCACCCTTGGCAAACATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCATTTCTGTAGCAGTATGTGCTATGAGCCACCCTTGGCAAACATA  586

seq1  TACTAGTGAGGAGGGAGTTTTTACTGGAGTCTCACAAGGGTGGATTTCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTGAGGAGGGAGTTTTTACTGGAGTCTCACAAGGGTGGATTTCTG  636

seq1  GGACCATTACATATCAGCAGTCCCACTATATTACCATTGTTATGAGGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATTACATATCAGCAGTCCCACTATATTACCATTGTTATGAGGTGG  686

seq1  TTCTGGGACCATTTTTCCAGGTTCTAGTCCTTTACCAGCTGTCTGACTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGACCATTTTTCCAGGTTCTAGTCCTTTACCAGCTGTCTGACTTA  736

seq1  ACCCACTTACTGAACCATCTAGTGTTCTGGGACGTGGCTACATAGGTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTTACTGAACCATCTAGTGTTCTGGGACGTGGCTACATAGGTCTT  786

seq1  AACTTGGATGTGGTAGGGGCAGTTATTTCAAGGCTTAAATGAATATAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGATGTGGTAGGGGCAGTTATTTCAAGGCTTAAATGAATATAATA  836

seq1  TGCTCAAAACACAGTCATTCAATAAGCCATAGATAAATACTCCTTTTCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAAACACAGTCATTCAATAAGCCATAGATAAATACTCCTTTTCCC  886

seq1  TCCTTACTCCAAAACCTTAACAGGTGTATACATGCCTTCTATCTCATTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTCCAAAACCTTAACAGGTGTATACATGCCTTCTATCTCATTCT  936

seq1  TATAGACTCTGTACTAGGCCTCAATGTGCTGCCTGAGTAAGTCCGGTTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACTCTGTACTAGGCCTCAATGTGCTGCCTGAGTAAGTCCGGTTTA  986

seq1  CTTGGTTTGCTAATAAAATCAATAGTACCATGTGTTCTCTACAGAAAACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTGCTAATAAAATCAATAGTACCATGTGTTCTCTACAGAAAACA  1036

seq1  ATGACCAAGTGTTTGCAGAGACATCCAACATACTTTTTTCAGGATCGTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAAGTGTTTGCAGAGACATCCAACATACTTTTTTCAGGATCGTGA  1086

seq1  ATTC  1101
      ||||
seq2  ATTC  1090