BAC Information

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BAC

Clone NameB6Ng01-073M12
Chromosome18 (Build37)
Map Location 37,906,821 - 38,037,285
singlet/doubletdoublet
Overlap genePcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1
Upstream geneIk, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693
Downstream geneHdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073M12.bB6Ng01-073M12.g
ACCDH890808DH890809
length1,0921,085
definitionDH890808|Mus musculus domesticus DNA, BAC clone: B6Ng01-073M12, 5' end.DH890809|Mus musculus domesticus DNA, BAC clone: B6Ng01-073M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,036,194 - 38,037,285)(37,906,821 - 37,907,908)
sequence
gaattcaacatagatacccaggattataacagaaatgacttgctttaatg
caaaataatacagaaaggaaaaaacccggagtccctgtgttagacaccag
ggggtgccctttctcttcttgtcactgcctggcactccctactgcattca
gccattttagactgattgtttttgcccccagctaactccattttgtgttg
atgacgcaggaaaataaaaaagattaggcaaggaggagtctgattggaag
agggagaaagacaggctgaagcacagctataggcagacccgtttactcag
cagtggctcaccagggacacaccttgctgcaggctgctgcctgcattctg
agcaatcgatgcttgcaagtccctgccagctgagctaagagcgaagtgga
tgctagctagcaatagctgaatgctgtgacagcaggcagcagctgatcct
tcttcatctagactctgaggtctgcgttcacattttttttttatagttac
ctagaaagaaatcagttatcctcataaatccaggaaacatttttttattt
aaaacatgctcttaaatgtgcatatatgtctaagagaaccatgtaaaaca
ttcttgatcatttttagaaataaaaaatgtgggttggagatgtctcagca
cttactgttcttgcagagtacccaaatttattcccagcacccatttcagg
tggctcacaactgcctgtaattccagtctggcctctacaggtaccagcat
tcacatgttcagactcacacacatagttaaaagtaactaaaatcttaaaa
aagaaaaaaccaaacaagcacacacatacctgtgtatttatcacccggtt
taagtcaaccttattttatatacctggatcaacctcctctgggacactca
ttactagtaaacatgagctgagcttgttatttaagctgtagtagtcaaaa
tgtgtgtcagagaaaaatgcacctcaatataatatgtaaatttttatcac
ttgtggcatttaatatttttccattatagtaggtttatctattctatttg
aatcaaagacaaacaaaaacaaagcctacaaccggagttggt
gaattccgtagtcagaagacaatggccgctcaaaggaatctctcagagcg
caccaaactggtcctccttttcttatggatgccctgggaatccgcagctc
ggcagatccgctattcagttcctgaggaactagagaaaggctcttttgtg
ggcaacatcgccaaggacctggggctggagccccgccagctggcggaacg
cggggtccgcatcatctccagaggtaggtctcagcttttctctctgaacc
cgcgaggcggcagcttagtcaccgcgggcaggatagaccgggaggagctg
tgcgcccagagcgcgccctgtctcgtcagctttaacatccttgttgaaga
tagagtgaaacttttcgggatagaaatagaggtaacggatgtcaatgaca
atgcgccaaaattccaagcagaaactctagatgtaaaaattaatgaaaat
gtcgccccaggaatgcgttttcctctcccggaagctactgatccggatgt
gggagtgaattctctgcagagctaccagctcagctccaataaacacttct
ccctagtcgttcagagcggtgctaagggcgtcaagtacccggagctagtg
ctggaacaggccctagatcgtgaggaagaggcgattcaccacctggtcct
cgtggcctctgacggaggaaaccctcccagatcgggcactgtcctcatca
ctgtgaccgtctttgatgcaaatgacaatgctccagtctttcacctccac
tgaataccgcgtgaacattccggagaacctgcctgtgggcacccaactgc
taaaggtaaccgccaccgacaaagacgaaggtgccaatggagaagtgaca
tatgcattccgaaaatcgctggacacacaattgtccaaattccactagac
aaacataccggagaaataaaaatttctgaaaatctagattatgagaaatg
agtttctatgaaatagaaatccaagctgagatggaggggcctatcttgca
actgcgaaggtgctgatacagagaagatgtaaatgacaacagtcctgagg
gtgaccatcaccatctcctcctcagtcatgacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38036194_38037285
seq2: B6Ng01-073M12.b_46_1137 (reverse)

seq1  ACCAACTACAGTTTGTAGGCTTTGTTTTTGTTTGTCTCTGATTCAAATA-  49
      ||||||| | | ||||||||||||||||||||||||| ||||||||||| 
seq2  ACCAACT-CCGGTTGTAGGCTTTGTTTTTGTTTGTCTTTGATTCAAATAG  49

seq1  AATAGATAAA-CTACTATAATTG-AAAATATTAAATGCCACAATTGATAA  97
      |||||||||| |||||||||| | ||||||||||||||||||| ||||||
seq2  AATAGATAAACCTACTATAATGGAAAAATATTAAATGCCACAAGTGATAA  99

seq1  TAATTTACATATTATATTTGAGGTGCATATTTCTCTGACACACATTTTGA  147
       ||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  AAATTTACATATTATA-TTGAGGTGCATTTTTCTCTGACACACATTTTGA  148

seq1  CCTACTACAGCTTAAATAACAAGCTCAGCTCATGTTTACTAGTAATGAGT  197
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTACTACAGCTTAAATAACAAGCTCAGCTCATGTTTACTAGTAATGAGT  197

seq1  GTCCCAGAGGAGGTTGATCCAGGTATATAAAATAAGGTTGACTTAAACCG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAGGAGGTTGATCCAGGTATATAAAATAAGGTTGACTTAAACCG  247

seq1  GGTGATAAATACACAGGTATGTGTGTGCTTGTTTGGTTTTTTCTTTTTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATAAATACACAGGTATGTGTGTGCTTGTTTGGTTTTTTCTTTTTTA  297

seq1  AGATTTTAGTTACTTTTAACTATGTGTGTGAGTCTGAACATGTGAATGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAGTTACTTTTAACTATGTGTGTGAGTCTGAACATGTGAATGCT  347

seq1  GGTACCTGTAGAGGCCAGACTGGAATTACAGGCAGTTGTGAGCCACCTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTGTAGAGGCCAGACTGGAATTACAGGCAGTTGTGAGCCACCTGA  397

seq1  AATGGGTGCTGGGAATAAATTTGGGTACTCTGCAAGAACAGTAAGTGCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTGCTGGGAATAAATTTGGGTACTCTGCAAGAACAGTAAGTGCTG  447

seq1  AGACATCTCCAACCCACATTTTTTATTTCTAAAAATGATCAAGAATGTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTCCAACCCACATTTTTTATTTCTAAAAATGATCAAGAATGTTT  497

seq1  TACATGGTTCTCTTAGACATATATGCACATTTAAGAGCATGTTTTAAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTTCTCTTAGACATATATGCACATTTAAGAGCATGTTTTAAATA  547

seq1  AAAAAATGTTTCCTGGATTTATGAGGATAACTGATTTCTTTCTAGGTAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTTTCCTGGATTTATGAGGATAACTGATTTCTTTCTAGGTAAC  597

seq1  TATAAAAAAAAAATGTGAACGCAGACCTCAGAGTCTAGATGAAGAAGGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAAAAAATGTGAACGCAGACCTCAGAGTCTAGATGAAGAAGGAT  647

seq1  CAGCTGCTGCCTGCTGTCACAGCATTCAGCTATTGCTAGCTAGCATCCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTGCCTGCTGTCACAGCATTCAGCTATTGCTAGCTAGCATCCAC  697

seq1  TTCGCTCTTAGCTCAGCTGGCAGGGACTTGCAAGCATCGATTGCTCAGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTCTTAGCTCAGCTGGCAGGGACTTGCAAGCATCGATTGCTCAGAA  747

seq1  TGCAGGCAGCAGCCTGCAGCAAGGTGTGTCCCTGGTGAGCCACTGCTGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAGCAGCCTGCAGCAAGGTGTGTCCCTGGTGAGCCACTGCTGAG  797

seq1  TAAACGGGTCTGCCTATAGCTGTGCTTCAGCCTGTCTTTCTCCCTCTTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGGGTCTGCCTATAGCTGTGCTTCAGCCTGTCTTTCTCCCTCTTCC  847

seq1  AATCAGACTCCTCCTTGCCTAATCTTTTTTATTTTCCTGCGTCATCAACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGACTCCTCCTTGCCTAATCTTTTTTATTTTCCTGCGTCATCAACA  897

seq1  CAAAATGGAGTTAGCTGGGGGCAAAAACAATCAGTCTAAAATGGCTGAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGAGTTAGCTGGGGGCAAAAACAATCAGTCTAAAATGGCTGAAT  947

seq1  GCAGTAGGGAGTGCCAGGCAGTGACAAGAAGAGAAAGGGCACCCCCTGGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGGGAGTGCCAGGCAGTGACAAGAAGAGAAAGGGCACCCCCTGGT  997

seq1  GTCTAACACAGGGACTCCGGGTTTTTTCCTTTCTGTATTATTTTGCATTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACACAGGGACTCCGGGTTTTTTCCTTTCTGTATTATTTTGCATTA  1047

seq1  AAGCAAGTCATTTCTGTTATAATCCTGGGTATCTATGTTGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTCATTTCTGTTATAATCCTGGGTATCTATGTTGAATTC  1092

seq1: chr18_37906821_37907908
seq2: B6Ng01-073M12.g_68_1152

seq1  GAATTCCGTAGTCAGAAGACAATGGCCGCTCAAAGGAATCTCTCAGAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTAGTCAGAAGACAATGGCCGCTCAAAGGAATCTCTCAGAGCG  50

seq1  CACCAAACTGGTCCTCCTTTTCTTATGGATGCCCTGGGAATCCGCAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAACTGGTCCTCCTTTTCTTATGGATGCCCTGGGAATCCGCAGCTC  100

seq1  GGCAGATCCGCTATTCAGTTCCTGAGGAACTAGAGAAAGGCTCTTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCCGCTATTCAGTTCCTGAGGAACTAGAGAAAGGCTCTTTTGTG  150

seq1  GGCAACATCGCCAAGGACCTGGGGCTGGAGCCCCGCCAGCTGGCGGAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACATCGCCAAGGACCTGGGGCTGGAGCCCCGCCAGCTGGCGGAACG  200

seq1  CGGGGTCCGCATCATCTCCAGAGGTAGGTCTCAGCTTTTCTCTCTGAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTCCGCATCATCTCCAGAGGTAGGTCTCAGCTTTTCTCTCTGAACC  250

seq1  CGCGAGGCGGCAGCTTAGTCACCGCGGGCAGGATAGACCGGGAGGAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGGCGGCAGCTTAGTCACCGCGGGCAGGATAGACCGGGAGGAGCTG  300

seq1  TGCGCCCAGAGCGCGCCCTGTCTCGTCAGCTTTAACATCCTTGTTGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCCAGAGCGCGCCCTGTCTCGTCAGCTTTAACATCCTTGTTGAAGA  350

seq1  TAGAGTGAAACTTTTCGGGATAGAAATAGAGGTAACGGATGTCAATGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGAAACTTTTCGGGATAGAAATAGAGGTAACGGATGTCAATGACA  400

seq1  ATGCGCCAAAATTCCAAGCAGAAACTCTAGATGTAAAAATTAATGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCAAAATTCCAAGCAGAAACTCTAGATGTAAAAATTAATGAAAAT  450

seq1  GTCGCCCCAGGAATGCGTTTTCCTCTCCCGGAAGCTACTGATCCGGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCCCAGGAATGCGTTTTCCTCTCCCGGAAGCTACTGATCCGGATGT  500

seq1  GGGAGTGAATTCTCTGCAGAGCTACCAGCTCAGCTCCAATAAACACTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGAATTCTCTGCAGAGCTACCAGCTCAGCTCCAATAAACACTTCT  550

seq1  CCCTAGTCGTTCAGAGCGGTGCTAAGGGCGTCAAGTACCCGGAGCTAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTCGTTCAGAGCGGTGCTAAGGGCGTCAAGTACCCGGAGCTAGTG  600

seq1  CTGGAACAGGCCCTAGATCGTGAGGAAGAGGCGATTCACCACCTGGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAGGCCCTAGATCGTGAGGAAGAGGCGATTCACCACCTGGTCCT  650

seq1  CGTGGCCTCTGACGGAGGAAACCCTCCCAGATCGGGCACTGTCCTCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCCTCTGACGGAGGAAACCCTCCCAGATCGGGCACTGTCCTCATCA  700

seq1  CTGTGACCGTCTTTGATGCAAATGACAATGCTCCAGTC-TTCACCTCCAC  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGTGACCGTCTTTGATGCAAATGACAATGCTCCAGTCTTTCACCTCCAC  750

seq1  TGAATACCGCGTGAACATTCCGGAGAACCTGCCTGTGGGCACCCAACTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACCGCGTGAACATTCCGGAGAACCTGCCTGTGGGCACCCAACTGC  800

seq1  TAAAGGTAACCGCCACCGACAAAGACGAAGGTGCCAATGGAGAAGTGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTAACCGCCACCGACAAAGACGAAGGTGCCAATGGAGAAGTGACA  850

seq1  TATGCATTCCGAAAATCGCTGGACACACAATTGTCCAAATTCCAACTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATGCATTCCGAAAATCGCTGGACACACAATTGTCCAAATTCC-ACTAGA  899

seq1  CAAACATACCGGAGAAATAAAAATTTCTGAAAATCTAGATTATGAAGAAA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAACATACCGGAGAAATAAAAATTTCTGAAAATCTAGATTATG-AGAAA  948

seq1  TGAGTTTCTATGAAATAGAAATCCAAGCTGAAGATGGAGGGGCCTATCTT  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAGTTTCTATGAAATAGAAATCCAAGCTG-AGATGGAGGGGCCTATCTT  997

seq1  GCAACTGCGAAGGTGCTGATTACAGTAGAAGATGTAAATGACAACAGTCC  1049
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  GCAACTGCGAAGGTGCTGA-TACAG-AGAAGATGTAAATGACAACAGTCC  1045

seq1  TGA-GGTGACCATCA-CATCT-CTCTTCAGTCCAGTGACAGA  1088
      ||| ||||||||||| ||||| ||| ||||||   |||||||
seq2  TGAGGGTGACCATCACCATCTCCTCCTCAGTC--ATGACAGA  1085