BAC Information

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BAC

Clone NameB6Ng01-074J11
Chromosome18 (Build37)
Map Location 60,273,818 - 60,428,367
singlet/doubletdoublet
Overlap geneEG240327, LOC546714, EG225594
Upstream gene4833446K15Rik, LOC667549
Downstream geneF830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074J11.bB6Ng01-074J11.g
ACCDH891394DH891395
length1,1951,175
definitionDH891394|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J11, 5' end.DH891395|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,273,818 - 60,275,018)(60,427,203 - 60,428,367)
sequence
gaattcacataaatacaaattatatcacattttagaaagaatagagaaaa
acaatctaacatctaattatatttttaaaattagtcacagatggttattt
ttacttcaatatctttccacattttagtagacttttcagagaaaacaaga
ggatttaaagatgtgcagtccagtaactaaataaagataaataaatatga
aatgtatccatcagaaatctttatttttctttatttccatgggcaagcct
agattaggagactgtgtataaaattctggactctcatctttaaatgactg
tctgacctagggagcaaattgatttgtccatgaaccacatctgctgattt
ggcgatgttagtggaggtgggggattatcagctagcctttcttttagaag
cagtagacgtcagcagtttctcggttctgaagtctatcagccaagacctt
ccttgtccttctgaatacaggcagctgagaaggcttagagcatcctctct
gttcaggttgttattgctcacatgtaggacaatggggaaatacagaaagc
ctccaaaacaattattagaatgaaggatttttttttcccactagggctaa
aactttaaagtaaagaagaaagcagtcattctgtcaagtttgcccattag
gtctcaatctaattcttaatttatgtcaattttaaaaataaataagagat
tctctaaggggagccaagtgactctgttactcattctcctcccacagagt
gattccacccggagcaggtggggagatccttgcccactcaactaaattat
ccatggtcattttcatagaaaagattctctctcttgtgtaactgaaagcc
taaacacagagaacgctatcttacttatattagcagatgtttaatactgc
acaccattagtaggtgcattaaaaagctgagtttaactcgtatgtttaca
aatgacagcaaggctttaatgacactctcacacatggcatatattgtgga
gggacatttagctgacactcagaacatcccagcttatgattccagattga
tgaaagatatgaaaagcacctgaaataattatttcattcatagtgtcata
attcactaatggtatggccagatgcagcaaagatgcagtagaggaaaaca
gtcttttccttaggttactatgtaatgctgtaaatggagtcttta
gaattctgattggatgaggtggggtggacctagaaggaggtgagtcagct
cgagtagagagaagagtttagcccttgctgcgagaaggatgtagtagtag
aagctgctgttttaagtggtagaagctagctgttgtaaaagaagccagta
gtagtgaagagagtttgtttagcccttaccctaggtagaagccagtagta
gtagaataagagtagtttagcccttgccctatgaagaagctgctggggaa
gagagctgtaaaagaaaaagcctgaagtaaagttgctgcatgaacctgac
ttggtgtctgtgttgtttgtatcatgttggccggagtaggacaacgacaa
ttatctatcttgtttatgattgtaaagaaatgttataaatacttaataaa
ttgttgattacaaagactgctgtcagcattgacatttccagtacaccctt
gacacattactattgattactggcaatgttgcttttgtttgttgataatc
taaattcctatttccagacataacacattgtttcccttaaaagagaagac
aaccaccagtacctaagtaagaagggctgaaaaagaaacagaagaaggag
ataataataatgcagcaacaatgtcttctgcactcatttctcaaacatcc
acacactggctatgtaagttctaggcaccaccaaggtcagatccttgggg
agatcaatcatcctcatgtccacccttgactttccttcctgcatgtgctg
attgttcttgatctttctatgaaatcatcactcctggcattgtgtcagcc
ttatgacctctgctggcaatcttaacctttcaaaaactcccaatattata
agatgggggcttgggttattaataaattaatttcatttcatagtaatgta
atgaaaattatggaatataagacacctgtttaccaagaaaaataatacct
caaattattttaaagtttaattgagtcaaagattgaattatccattatac
aacagatctgggccaacaaatgtcagcttttctcaccatacacaaacagc
tggtatattaaaaaaaaaacctataaggattacaaggttatgttgggctt
atggattcctctgtcagaaagtcatggcagtgtgctatgcttttaaatgg
aaaaaggttttgccttttatgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_60273818_60275018
seq2: B6Ng01-074J11.b_44_1238

seq1  GAATTCACATAAATACAAATTATATCACATTTTAGAAAGAATAGAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAAATACAAATTATATCACATTTTAGAAAGAATAGAGAAAA  50

seq1  ACAATCTAACATCTAATTATATTTTTAAAATTAGTCACAGATGGTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTAACATCTAATTATATTTTTAAAATTAGTCACAGATGGTTATTT  100

seq1  TTACTTCAATATCTTTCCACATTTTAGTAGACTTTTCAGAGAAAACAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCAATATCTTTCCACATTTTAGTAGACTTTTCAGAGAAAACAAGA  150

seq1  GGATTTAAAGATGTGCAGTCCAGTAACTAAATAAAGATAAATAAATATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAAAGATGTGCAGTCCAGTAACTAAATAAAGATAAATAAATATGA  200

seq1  AATGTATCCATCAGAAATCTTTATTTTTCTTTATTTCCATGGGCAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCCATCAGAAATCTTTATTTTTCTTTATTTCCATGGGCAAGCCT  250

seq1  AGATTAGGAGACTGTGTATAAAATTCTGGACTCTCATCTTTAAATGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGGAGACTGTGTATAAAATTCTGGACTCTCATCTTTAAATGACTG  300

seq1  TCTGACCTAGGGAGCAAATTGATTTGTCCATGAACCACATCTGCTGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTAGGGAGCAAATTGATTTGTCCATGAACCACATCTGCTGATTT  350

seq1  GGCGATGTTAGTGGAGGTGGGGGATTATCAGCTAGCCTTTCTTTTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATGTTAGTGGAGGTGGGGGATTATCAGCTAGCCTTTCTTTTAGAAG  400

seq1  CAGTAGACGTCAGCAGTTTCTCGGTTCTGAAGTCTATCAGCCAAGACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGACGTCAGCAGTTTCTCGGTTCTGAAGTCTATCAGCCAAGACCTT  450

seq1  CCTTGTCCTTCTGAATACAGGCAGCTGAGAAGGCTTAGAGCATCCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCCTTCTGAATACAGGCAGCTGAGAAGGCTTAGAGCATCCTCTCT  500

seq1  GTTCAGGTTGTTATTGCTCACATGTAGGACAATGGGGAAATACAGAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGTTGTTATTGCTCACATGTAGGACAATGGGGAAATACAGAAAGC  550

seq1  CTCCAAAACAATTATTAGAATGAAGGATTTTTTTTTCCCACTAGGGCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAACAATTATTAGAATGAAGGATTTTTTTTTCCCACTAGGGCTAA  600

seq1  AACTTTAAAGTAAAGAAGAAAGCAGTCATTCTGTCAAGTTTGCCCATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAAGTAAAGAAGAAAGCAGTCATTCTGTCAAGTTTGCCCATTAG  650

seq1  GTCTCAATCTAATTCTTAATTTATGTCAATTTTAAAAATAAATAAGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAATCTAATTCTTAATTTATGTCAATTTTAAAAATAAATAAGAGAT  700

seq1  TCTCTAAGGGGAGCCAAGTGACTCTGTTACTCATTCTCCTCCCACAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGGGGAGCCAAGTGACTCTGTTACTCATTCTCCTCCCACAGAGT  750

seq1  GATTCCACCCGGAGCAGGTGGGGAGATCCTTGCCCACTCAACTAAATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCACCCGGAGCAGGTGGGGAGATCCTTGCCCACTCAACTAAATTAT  800

seq1  CCATGGTCATTTTCATAGAAAAGATTCTCTCTCTTGTGTAACTGAAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTCATTTTCATAGAAAAGATTCTCTCTCTTGTGTAACTGAAAGCC  850

seq1  TAAACACAGAGAACGCTATCTTACTTATATTAGCAGATGTTTAATACTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAGAGAACGCTATCTTACTTATATTAGCAGATGTTTAATACTGC  900

seq1  ACACCATTAGTAGGTGCATTAAAAAGCTGAGTTTAAACTCGTATGTTTAC  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACACCATTAGTAGGTGCATTAAAAAGCTGAGTTT-AACTCGTATGTTTAC  949

seq1  AAATGACAGCAAGGCTTTAATGACACTCTCACACATGGCATATATTGT-G  999
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAATGACAGCAAGGCTTTAATGACACTCTCACACATGGCATATATTGTGG  999

seq1  AGGGACATTAAGCTGACACTCCAGGAACATCCCAGCTTATGATTCCAGAT  1049
      ||||||||| |||||||||||   ||||||||||||||||||||||||||
seq2  AGGGACATTTAGCTGACACTC--AGAACATCCCAGCTTATGATTCCAGAT  1047

seq1  GGATGAAAGATAATGAAAAAGCA-CTGAAATAATTATTTCATCCATAGTG  1098
       |||||||||| ||| ||||||| |||||||||||||||||| |||||||
seq2  TGATGAAAGAT-ATG-AAAAGCACCTGAAATAATTATTTCATTCATAGTG  1095

seq1  TCATAATTCACTAATGGTAATGGCAAGATGCCAGCAAAGATGCAGTAGA-  1147
      |||||||||||||||||| ||||| ||||| |||||||||||||||||| 
seq2  TCATAATTCACTAATGGT-ATGGCCAGATG-CAGCAAAGATGCAGTAGAG  1143

seq1  GAAACAAGCCTTTTCTCTAAAGTTACTAGTGATAGCCTGTAAAATGAGTC  1197
      ||||  || |||||| || | ||||||| ||  |  |||||||  |||||
seq2  GAAAACAGTCTTTTC-CTTAGGTTACTA-TGTAATGCTGTAAATGGAGTC  1191

seq1  TTTA  1201
      ||||
seq2  TTTA  1195

seq1: chr18_60427203_60428367
seq2: B6Ng01-074J11.g_69_1243 (reverse)

seq1  CAAAC-TAAAA-GCAAAACCTTTTTCAAT---AAAGCATAGCCAACTGCC  45
      ||||| ||||| |||||||||||||| ||   ||||||||||  ||||||
seq2  CAAACATAAAAGGCAAAACCTTTTTCCATTTAAAAGCATAGCACACTGCC  50

seq1  ATGACATCCTGACAGAGAAAT-CATAAG-CCAACATAACCTTGT-ATCTT  92
      ||||| | ||||||||| ||| |||||| ||||||||||||||| ||| |
seq2  ATGACTTTCTGACAGAGGAATCCATAAGCCCAACATAACCTTGTAATCCT  100

seq1  TATA-GTTTTTTTTTTAATATACCAGCTGTTTGTGTATGGTGAAGAAAAG  141
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATAGGTTTTTTTTTTAATATACCAGCTGTTTGTGTATGGTG-AGAAAAG  149

seq1  CTGACATTTGTTGGCCCAGATCTGTTGTATAATGGAT-ATTCAATCTTTG  190
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGACATTTGTTGGCCCAGATCTGTTGTATAATGGATAATTCAATCTTTG  199

seq1  ACTCAATTAAACTTTAAAATAATTTGAGGTATTATTTTTCTTGGTAAACA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTAAACTTTAAAATAATTTGAGGTATTATTTTTCTTGGTAAACA  249

seq1  GGTGTCTTATATTCCATAATTTTCATTACATTACTATGAAATGAAATTAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTATATTCCATAATTTTCATTACATTACTATGAAATGAAATTAA  299

seq1  TTTATTAATAA-CCAAGCCCCCATCTTATAATATTGGGAGTTTTTGAAAG  339
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATAACCCAAGCCCCCATCTTATAATATTGGGAGTTTTTGAAAG  349

seq1  GTTAAGATTGCCAGCAGAGGTCATAAGGCTGACACAATGCCAGGAGTGAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATTGCCAGCAGAGGTCATAAGGCTGACACAATGCCAGGAGTGAT  399

seq1  GATTTCATAGAAAGATCAAGAACAATCAGCACATGCAGGAAGGAAAGTCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATAGAAAGATCAAGAACAATCAGCACATGCAGGAAGGAAAGTCA  449

seq1  AGGGTGGACATGAGGATGATTGATCTCCCCAAGGATCTGACCTTGGTGGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGACATGAGGATGATTGATCTCCCCAAGGATCTGACCTTGGTGGT  499

seq1  GCCTAGAACTTACATAGCCAGTGTGTGGATGTTTGAGAAATGAGTGCAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAACTTACATAGCCAGTGTGTGGATGTTTGAGAAATGAGTGCAGA  549

seq1  AGACATTGTTGCTGCATTATTATTATCTCCTTCTTCTGTTTCTTTTTCAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGTTGCTGCATTATTATTATCTCCTTCTTCTGTTTCTTTTTCAG  599

seq1  CCCTTCTTACTTAGGTACTGGTGGTTGTCTTCTCTTTTAAGGGAAACAAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTACTTAGGTACTGGTGGTTGTCTTCTCTTTTAAGGGAAACAAT  649

seq1  GTGTTATGTCTGGAAATAGGAATTTAGATTATCAACAAACAAAAGCAACA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATGTCTGGAAATAGGAATTTAGATTATCAACAAACAAAAGCAACA  699

seq1  TTGCCAGTAATCAATAGTAATGTGTCAAGGGTGTACTGGAAATGTCAATG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGTAATCAATAGTAATGTGTCAAGGGTGTACTGGAAATGTCAATG  749

seq1  CTGACAGCAGTCTTTGTAATCAACAATTTATTAAGTATTTATAACATTTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCAGTCTTTGTAATCAACAATTTATTAAGTATTTATAACATTTC  799

seq1  TTTACAATCATAAACAAGATAGATAATTGTCGTTGTCCTACTCCGGCCAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATCATAAACAAGATAGATAATTGTCGTTGTCCTACTCCGGCCAA  849

seq1  CATGATACAAACAACACAGACACCAAGTCAGGTTCATGCAGCAACTTTAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATACAAACAACACAGACACCAAGTCAGGTTCATGCAGCAACTTTAC  899

seq1  TTCAGGCTTTTTCTTTTACAGCTCTCTTCCCCAGCAGCTTCTTCATAGGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTTTTTCTTTTACAGCTCTCTTCCCCAGCAGCTTCTTCATAGGG  949

seq1  CAAGGGCTAAACTACTCTTATTCTACTACTACTGGCTTCTACCTAGGGTA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTAAACTACTCTTATTCTACTACTACTGGCTTCTACCTAGGGTA  999

seq1  AGGGCTAAACAAACTCTCTTCACTACTACTGGCTTCTTTTACAACAGCTA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAAACAAACTCTCTTCACTACTACTGGCTTCTTTTACAACAGCTA  1049

seq1  GCTTCTACCACTTAAAACAGCAGCTTCTACTACTACATCCTTCTCGCAGC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACCACTTAAAACAGCAGCTTCTACTACTACATCCTTCTCGCAGC  1099

seq1  AAGGGCTAAACTCTTCTCTCTACTCGAGCTGACTCACCTCCTTCTAGGTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTAAACTCTTCTCTCTACTCGAGCTGACTCACCTCCTTCTAGGTC  1149

seq1  CACCCCACCTCATCCAATCAGAATTC  1165
      ||||||||||||||||||||||||||
seq2  CACCCCACCTCATCCAATCAGAATTC  1175