BAC Information

Click to search

BAC

Clone NameB6Ng01-074M11
Chromosome18 (Build37)
Map Location 55,607,635 - 55,742,690
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074M11.bB6Ng01-074M11.g
ACCDH891530DH891531
length1,1271,103
definitionDH891530|Mus musculus domesticus DNA, BAC clone: B6Ng01-074M11, 5' end.DH891531|Mus musculus domesticus DNA, BAC clone: B6Ng01-074M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,741,558 - 55,742,690)(55,607,635 - 55,608,734)
sequence
gaattcacacagaggtcacatgcagtgccaagcatctacagacccagtac
tctgacagtaattggccagaaacaggagaagtggccagcaacttgagtat
cagatagcctggaataggtagcatgggaatagaaagaacaaaagagatcc
tgcttcaaacagggaggaaggagagaaagaacacatttctgaaaaattgt
tcactgacctccacaagtacacagtagtgtgcaaggatctcacacacaca
cacacacacacacacacacacacacacacacacacatacgtggatgaagg
atgaagaaagtgagctgagtaccagcatttccctctatttgcatgctcta
tgaatgtgacttggcaagctcccactccaccctcctgtcttccccgccac
aatgaaatatatccttagactaagagataaaataaaccctttgttgtttt
gtttctattgccaagtgatttcttatagcaataggaaaaatcatggaaat
ataaaccagggtctcacaggtgaaatataaggagaatactcctttgatat
gagtacctttcaattgagaaattagttatcaatactcctcttttgtatgc
acatgtcctatcttatactttatttattatgtgtgtgatacttctcatgc
aatataggtgcttatactttcatcattgaacaggaggaagccgtagcttt
gctgttcactcctaaagaaattcaatatcagattttataagagtctcaag
tgtatcagtttttgctttgtggttcctcttttcttttcttttcttttttt
ttttcaaagaaaagctttcagcacaggtgattttgttatatttctttgac
ccagtacaatatttttgccaagcttatatatattttgtcaaagttatatg
ttgaatagcttgggggctactagtaagtatttgaaatataagatatttgt
ttttttttctaggcattgttattacccaacattctttcttcttacaattg
aacagaatgatggacagatgcaactgtcccatgggtgtaaggagaggttt
cccacccttcttatttgagcaccttggattaagcaaatttgttttaggaa
ttctaaatgccagaaaggtatgggccc
gaattcctcaggagtaggtttagctcagttggtagagtgcttgtgtgtca
tgcataaagccctgggtttgatccccagtaccacatattctaggtattat
gagccatacatactaggagcaggaggcacagtagttcaagactattgtca
gctctagcctgggatatatgaccaccctttaagaaagagtgtccagggct
gggggtggagtgggaggatggccccatttaatttataaacactgaaaatg
aactgtgtaggacataataagagagtaacacccgtgactaatttatattc
tccaggttcatggctttaatgacagtgactgttaaaaatattccccttct
tggttgtattacaggctgtttgtagagacaaagttctctttaacttaatt
tgtatgaaagatctcactcttcatactaaaaataaagacatttaaagaaa
atgtgacttttgacagtacaagcaactaaatggagcatgtgctgagccta
ttcatctttgacagcctgactgctctcagaaccccaccaagagcattaca
ccaaaagatgccatttcacacaaacagcaaatagactgttattcctgctc
gccaagactctcttgttccaagcagctctctgcatctcacaggtaaagaa
aaatccaagggaacgagaaaagggaatgagaaaatataaaacccacaagt
gaaggaaagaaagatgtatgagaatgggggaagctcagagtgcctgtatc
atccttgaatacaaacgactcattgatagagatttacatttttcagttaa
ttttcaacccattttcttagctcttcttggatgtgtagctcaatgttaga
gtcagtcttctgagaggttacaccaaagcaagtggacagttaataccccc
accaagaggaaactttgacaaactgaagggcatgtgtctttcttgcatgc
tataactctgcccttgaactctacaagaccaagtaaaactgattgctaca
ttaattaccctatattatatggggggaagaacatattgaaagtagcttta
ttccctcgagtgtaaactcggagagaaagaaacattttgaatgggaaggg
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_55741558_55742690
seq2: B6Ng01-074M11.b_46_1172 (reverse)

seq1  GGGCACATACCTTTCTGGCATTTAGAATTCCTAAAACCAAATATTGCTTA  50
      |||| ||||||||||||||||||||||||||||||| ||||| |||||||
seq2  GGGCCCATACCTTTCTGGCATTTAGAATTCCTAAAA-CAAAT-TTGCTTA  48

seq1  ATACATAGTGCTTCAACTAAGAA-GGTGTGAAACCTCTACCTTACACCCA  99
      || ||  |||| |||| |||||| |||| ||||||||| |||||||||||
seq2  ATCCAAGGTGC-TCAAATAAGAAGGGTGGGAAACCTCT-CCTTACACCCA  96

seq1  TGGGACAGTTGCATCTGTCCATCATTCTGTTCAATTGTAAGAAGGAAGAA  149
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGGACAGTTGCATCTGTCCATCATTCTGTTCAATTGTAAGAAGAAAGAA  146

seq1  TGTTGGGTAATAACAAATGCCTAGAAAAAAAAAACATAATATCTAATATT  199
      |||||||||||||| ||||||||| ||||||||||| ||||||| |||||
seq2  TGTTGGGTAATAAC-AATGCCTAG-AAAAAAAAACA-AATATCTTATATT  193

seq1  TCAAATACTTACTAGTAGCCCCCAAGCTATTCAACATATAACTTTGACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACTTACTAGTAGCCCCCAAGCTATTCAACATATAACTTTGACAA  243

seq1  AATATATATTAAGCTTGGCAAAAATATTGTACTGGGTCAAAGAAATATAA  299
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATATATA-TAAGCTTGGCAAAAATATTGTACTGGGTCAAAGAAATATAA  292

seq1  CAAAATCACCTGTGCTGAAAGCTTTTCTTTGAAAAAAAAAAAGAAAAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCACCTGTGCTGAAAGCTTTTCTTTGAAAAAAAAAAAGAAAAGAA  342

seq1  AAGAAAAGAGGAACCACAAAGC-AAAACTGATACACTTGAGACTCTTATA  398
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGAAAAGAGGAACCACAAAGCAAAAACTGATACACTTGAGACTCTTATA  392

seq1  AAATCTGATATTGAATTTCTTTAGGAGTGAACAGCAAAGCTACGGCTTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGATATTGAATTTCTTTAGGAGTGAACAGCAAAGCTACGGCTTCC  442

seq1  TCCTGTTCAATGATGAAAGTATAAGCACCTATATTGCATGAGAAGTATCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCAATGATGAAAGTATAAGCACCTATATTGCATGAGAAGTATCA  492

seq1  CACACATAATAAATAAAGTATAAGATAGGACATGTGCATACAAAAGAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAATAAATAAAGTATAAGATAGGACATGTGCATACAAAAGAGGA  542

seq1  GTATTGATAACTAATTTCTCAATTGAAAGGTACTCATATCAAAGGAGTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGATAACTAATTTCTCAATTGAAAGGTACTCATATCAAAGGAGTAT  592

seq1  TCTCCTTATATTTCACCTGTGAGACCCTGGTTTATATTTCCATGATTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTATATTTCACCTGTGAGACCCTGGTTTATATTTCCATGATTTTT  642

seq1  CCTATTGCTATAAGAAATCACTTGGCAATAGAAACAAAACAACAAAGGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGCTATAAGAAATCACTTGGCAATAGAAACAAAACAACAAAGGGT  692

seq1  TTATTTTATCTCTTAGTCTAAGGATATATTTCATTGTGGCGGGGAAGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATCTCTTAGTCTAAGGATATATTTCATTGTGGCGGGGAAGACA  742

seq1  GGAGGGTGGAGTGGGAGCTTGCCAAGTCACATTCATAGAGCATGCAAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTGGAGTGGGAGCTTGCCAAGTCACATTCATAGAGCATGCAAATA  792

seq1  GAGGGAAATGCTGGTACTCAGCTCACTTTCTTCATCCTTCATCCACGTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAATGCTGGTACTCAGCTCACTTTCTTCATCCTTCATCCACGTAT  842

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGATC  892

seq1  CTTGCACACTACTGTGTACTTGTGGAGGTCAGTGAACAATTTTTCAGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACACTACTGTGTACTTGTGGAGGTCAGTGAACAATTTTTCAGAAA  942

seq1  TGTGTTCTTTCTCTCCTTCCTCCCTGTTTGAAGCAGGATCTCTTTTGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTTCTCTCCTTCCTCCCTGTTTGAAGCAGGATCTCTTTTGTTC  992

seq1  TTTCTATTCCCATGCTACCTATTCCAGGCTATCTGATACTCAAGTTGCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTCCCATGCTACCTATTCCAGGCTATCTGATACTCAAGTTGCTG  1042

seq1  GCCACTTCTCCTGTTTCTGGCCAATTACTGTCAGAGTACTGGGTCTGTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCTCCTGTTTCTGGCCAATTACTGTCAGAGTACTGGGTCTGTAG  1092

seq1  ATGCTTGGCACTGCATGTGACCTCTGTGTGAATTC  1133
      |||||||||||||||||||||||||||||||||||
seq2  ATGCTTGGCACTGCATGTGACCTCTGTGTGAATTC  1127

seq1: chr18_55607635_55608734
seq2: B6Ng01-074M11.g_69_1171

seq1  GAATTCCTCAGGAGTAGGTTTAGCTCAGTTGGTAGAGTGCTTGTGTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGGAGTAGGTTTAGCTCAGTTGGTAGAGTGCTTGTGTGTCA  50

seq1  TGCATAAAGCCCTGGGTTTGATCCCCAGTACCACATATTCTAGGTATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAAGCCCTGGGTTTGATCCCCAGTACCACATATTCTAGGTATTAT  100

seq1  GAGCCATACATACTAGGAGCAGGAGGCACAGTAGTTCAAGACTATTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATACATACTAGGAGCAGGAGGCACAGTAGTTCAAGACTATTGTCA  150

seq1  GCTCTAGCCTGGGATATATGACCACCCTTTAAGAAAGAGTGTCCAGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGCCTGGGATATATGACCACCCTTTAAGAAAGAGTGTCCAGGGCT  200

seq1  GGGGGTGGAGTGGGAGGATGGCCCCATTTAATTTATAAACACTGAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGAGTGGGAGGATGGCCCCATTTAATTTATAAACACTGAAAATG  250

seq1  AACTGTGTAGGACATAATAAGAGAGTAACACCCGTGACTAATTTATATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTAGGACATAATAAGAGAGTAACACCCGTGACTAATTTATATTC  300

seq1  TCCAGGTTCATGGCTTTAATGACAGTGACTGTTAAAAATATTCCCCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTCATGGCTTTAATGACAGTGACTGTTAAAAATATTCCCCTTCT  350

seq1  TGGTTGTATTACAGGCTGTTTGTAGAGACAAAGTTCTCTTTAACTTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTATTACAGGCTGTTTGTAGAGACAAAGTTCTCTTTAACTTAATT  400

seq1  TGTATGAAAGATCTCACTCTTCATACTAAAAATAAAGACATTTAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAAAGATCTCACTCTTCATACTAAAAATAAAGACATTTAAAGAAA  450

seq1  ATGTGACTTTTGACAGTACAAGCAACTAAATGGAGCATGTGCTGAGCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTTTTGACAGTACAAGCAACTAAATGGAGCATGTGCTGAGCCTA  500

seq1  TTCATCTTTGACAGCCTGACTGCTCTCAGAACCCCACCAAGAGCATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTTGACAGCCTGACTGCTCTCAGAACCCCACCAAGAGCATTACA  550

seq1  CCAAAAGATGCCATTTCACACAAACAGCAAATAGACTGTTATTCCTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGATGCCATTTCACACAAACAGCAAATAGACTGTTATTCCTGCTC  600

seq1  GCCAAGACTCTCTTGTTCCAAGCAGCTCTCTGCATCTCACAGGTAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGACTCTCTTGTTCCAAGCAGCTCTCTGCATCTCACAGGTAAAGAA  650

seq1  AAATCCAAGGGAACGAGAAAAGGGAATGAGAAAATATAAAACCCACAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAGGGAACGAGAAAAGGGAATGAGAAAATATAAAACCCACAAGT  700

seq1  GAAGGAAAGAAAGATGTATGAGAAT-GGGGAAGCTCAGAGTGCCTGTATC  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAAGGAAAGAAAGATGTATGAGAATGGGGGAAGCTCAGAGTGCCTGTATC  750

seq1  ATCC-TGAATACAAAACGACTCAATGATAGAGATTTACA-TTTTCAGTTA  797
      |||| ||||||| |||||||||| ||||||||||||||| ||||||||||
seq2  ATCCTTGAATAC-AAACGACTCATTGATAGAGATTTACATTTTTCAGTTA  799

seq1  ATTTCCAA-CCAATTTCTTAGCTCTTCCTGGATGTGTAGCTCAATGTTAG  846
      |||| ||| ||| |||||||||||||| ||||||||||||||||||||||
seq2  ATTTTCAACCCATTTTCTTAGCTCTTCTTGGATGTGTAGCTCAATGTTAG  849

seq1  AGTCAGTC-TCTGAGAGGTTACACCAAAGCAAGTGGACAGTTAATA-CCC  894
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  AGTCAGTCTTCTGAGAGGTTACACCAAAGCAAGTGGACAGTTAATACCCC  899

seq1  CACCAAGAGGAAACTATGACAAACTG-AGGGCATGTGTCCTTCTTGCATG  943
      ||||||||||||||| |||||||||| |||||||||||| ||||||||||
seq2  CACCAAGAGGAAACTTTGACAAACTGAAGGGCATGTGTCTTTCTTGCATG  949

seq1  CTATCAACTCTGCCTTTG-ACTCTACAAGACCAAGTTAAAACTGATTGGC  992
      |||| ||||||||| ||| |||||||||||||||| ||||||||||| ||
seq2  CTAT-AACTCTGCCCTTGAACTCTACAAGACCAAG-TAAAACTGATT-GC  996

seq1  AACATTAATTACCCTAATATTATAT-TGTGGAAGACAATATGGAAAGACA  1041
       |||||||||||||| |||||||||  | ||||||  |||| |||||  |
seq2  TACATTAATTACCCT-ATATTATATGGGGGGAAGAACATATTGAAAG-TA  1044

seq1  GC-TTATTCAGCTGCAGTG-AAACCCGAGAAGAAAGAAACATTTAGAATG  1089
      || ||||||  ||  |||| |||| ||   |||||||||||||| |||||
seq2  GCTTTATTC-CCTCGAGTGTAAACTCGGAGAGAAAGAAACATTTTGAATG  1093

seq1  GGCAAGGGGTG  1100
      || ||||||||
seq2  GG-AAGGGGTG  1103