BAC Information

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BAC

Clone NameB6Ng01-075A13
Chromosome18 (Build37)
Map Location 19,028,556 - 19,029,678
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658
Downstream geneLOC665624, LOC665629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075A13.bB6Ng01-075A13.g
ACCDH891711DH891712
length1,1801,123
definitionDH891711|Mus musculus domesticus DNA, BAC clone: B6Ng01-075A13, 5' end.DH891712|Mus musculus domesticus DNA, BAC clone: B6Ng01-075A13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagctgaggaatactgaagggcttagaagcacctgagaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccgagaga
ttccaactcacaccagtcagaatggctaagataaaaaattcaggtgacag
cagatgctggcgaggatgtggagaagaggaacactcctctattgctggtg
gaattgcaagtttgtacaaccactctggaaatcagtctggcggttcctaa
gaaaattggacatagcactactggaagatctagcaatactagtcctgagc
atatacccagaagatgttccaactggtaagaagggcacatgttccatatg
ttcatagcgaccttatttataatagccagaagctggaagaaactcagatg
tccctcaacagagaaatgaatacagaaaatgtggtacatttacacaatgg
aatactactcagctattaaaaacaataaatttatgaaaatcttgggcaaa
tggatgtatctgaaggatatcatcctaagtgatgtaacccaatcacaaaa
gaacacacttaatattcactcactaataagtggatattatcccagaaact
tagcatacccaagatacaatttgcaaaacacaaggaaatcaagaagaagg
aagaccaacatgtggatacttcattccttcttagaatagggaacaaaata
tccatggaaggagttacagagacaaagtttggagctttaaagaaaggatg
gaccatccagagagtgcccacccagggatccatcccattatcagccacca
aacgcagacactatggcttatgtcagcaagattttgctgaaaggaccctg
atatagctgtctcttgtgaggctattatgccagtgcctggaaaatacaga
agtgtatgttcacagtcatctattggatggaacacagggcccccaatgga
ggagatagagaaagtacccaaggagctgaaggggtctgcaaccctataga
tagacacatatgaactaaccagtacccacagagcttgtgtctctagctac
atatgtagcagaagatgggcctagatggcatcatggagggaggccccttg
gtcttgttaactcatatgccttagtacaaggaatgtcaggccaataaatg
gggaattgggtgtgggtataggggaaacag
gaattcaagcctggagaggaagaagaaaaggagaatgcctcacctacagc
aacaccaaacatgtgtaaacctggtccaaatatgaactggactcaatgta
cagaatttgctgaaccttacccacttaagagtggtatacccctctaccta
atccatggggaaataaataccccagggaattgtatgaccacttgtaccca
gaactccagaggacatggaaccagacaaattggctctgggtagcaggctt
cccaaacctaccctggtttggcaagctaagctattaccctgatttaagat
aggccacaagaatataattaccacaatggtccaccagcaggattgggtat
cagccatggcctaggggatggaacattatagacaaccactagtactaacc
agcatcctaccaaaatcatggcagactacattgcatgaaaaaacaccaac
atccttatgtacaatgccaaaggcaacacatgaatgctttttggtagctg
aaggatattcatggatatcaggatgtagggtagaaaatgaaaccaacaaa
ataccaggcattgcctggaactgcttcagcaggaactcttggtctacaag
accagaggaataaagacataaagtactaacttaacatggaaaattagaag
gagaagtaggactccacacacatgaggtgcacgtcatacacacacaccac
tcaaaagaaatacagcagcatttttaacattatttaaggagactagcagt
tatgagtatacctcactcatgtcactctgagatcaaggagctggcattta
caaagaatagtacaaataaaagaagtttggaaatatataaagaaacatat
acccatttgtttgaggactaccgatgataaggaggattatatctaagaag
ggagctaacttacttacaatttgggacttaacgaaggaaatcataaaatg
gtgaattcagttgggacatactttaacatcactaatacaaaatattacct
tactacattcaacatcactatatgaccacatgtgataagaaggaaaacag
tcagaattatttgtgaccatcataaatggcaatgattgacttcccttaca
tgggatacaaagggaacatcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19028556_19029678
seq2: B6Ng01-075A13.g_69_1191

seq1  GAATTCAAGCCTGGAGAGGAAGAAGAAAAGGAGAATGCCTCACCTACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCTGGAGAGGAAGAAGAAAAGGAGAATGCCTCACCTACAGC  50

seq1  AACACCAAACATGTGTAAACCTGGTCCAAATATGAACTGGACTCAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAACATGTGTAAACCTGGTCCAAATATGAACTGGACTCAATGTA  100

seq1  CAGAATTTGCTGAACCTTACCCACTTAAGAGTGGTATACCCCTCTACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTGCTGAACCTTACCCACTTAAGAGTGGTATACCCCTCTACCTA  150

seq1  ATCCATGGGGAAATAAATACCCCAGGGAATTGTATGACCACTTGTACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGGGAAATAAATACCCCAGGGAATTGTATGACCACTTGTACCCA  200

seq1  GAACTCCAGAGGACATGGAACCAGACAAATTGGCTCTGGGTAGCAGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCAGAGGACATGGAACCAGACAAATTGGCTCTGGGTAGCAGGCTT  250

seq1  CCCAAACCTACCCTGGTTTGGCAAGCTAAGCTATTACCCTGATTTAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCTACCCTGGTTTGGCAAGCTAAGCTATTACCCTGATTTAAGAT  300

seq1  AGGCCACAAGAATATAATTACCACAATGGTCCACCAGCAGGATTGGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACAAGAATATAATTACCACAATGGTCCACCAGCAGGATTGGGTAT  350

seq1  CAGCCATGGCCTAGGGGATGGAACATTATAGACAACCACTAGTACTAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGGCCTAGGGGATGGAACATTATAGACAACCACTAGTACTAACC  400

seq1  AGCATCCTACCAAAATCATGGCAGACTACATTGCATGAAAAAACACCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTACCAAAATCATGGCAGACTACATTGCATGAAAAAACACCAAC  450

seq1  ATCCTTATGTACAATGCCAAAGGCAACACATGAATGCTTTTTGGTAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATGTACAATGCCAAAGGCAACACATGAATGCTTTTTGGTAGCTG  500

seq1  AAGGATATTCATGGATATCAGGATGTAGGGTAGAAAATGAAACCAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATTCATGGATATCAGGATGTAGGGTAGAAAATGAAACCAACAAA  550

seq1  ATACCAGGCATTGCCTGGAACTGCTTCAGCAGGAACTCTTGGTCTACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGGCATTGCCTGGAACTGCTTCAGCAGGAACTCTTGGTCTACAAG  600

seq1  ACCAGAGGAATAAAGACATAAAGTACTAACTTAACATGGAAAATTAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGAATAAAGACATAAAGTACTAACTTAACATGGAAAATTAGAAG  650

seq1  GAGAAGTAGGACTCCACACACATGAGGTGCACGTCATACACACACACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTAGGACTCCACACACATGAGGTGCACGTCATACACACACACCAC  700

seq1  TCAAAAGAAATACAGCAGCATTTTTAACATTATTTAAGGAGACTAGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAATACAGCAGCATTTTTAACATTATTTAAGGAGACTAGCAGT  750

seq1  TATGAGTATACCTCACTCATGTCACTCTGAGATCAAGGAGCTGGCA-TTA  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATGAGTATACCTCACTCATGTCACTCTGAGATCAAGGAGCTGGCATTTA  800

seq1  C-AAGAATAGTACAAATAAAAGAAGTTTGGAAATATATAAAGAAACATAT  848
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATAGTACAAATAAAAGAAGTTTGGAAATATATAAAGAAACATAT  850

seq1  ACCCATT--GTTGAGGACTACCGATGATAAGGAGGAATATATCTAAGAAG  896
      |||||||   |||||||||||||||||||||||||| |||||||||||||
seq2  ACCCATTTGTTTGAGGACTACCGATGATAAGGAGGATTATATCTAAGAAG  900

seq1  GGAGCTAACTTACCTAACAAATTTGGACTT-ACGAAGGAAATCATAAA--  943
      |||||||||||| || |||| || |||||| |||||||||||||||||  
seq2  GGAGCTAACTTA-CTTACAATTTGGGACTTAACGAAGGAAATCATAAAAT  949

seq1  TGTGAATTCAGTAGGGACATACTTT-ACATCACTATTACAAAATATTACC  992
       ||||||||||| |||||||||||| ||||||||| ||||||||||||||
seq2  GGTGAATTCAGTTGGGACATACTTTAACATCACTAATACAAAATATTACC  999

seq1  -TACTACAATCAACATCACTATATGACCACATGTGATAAGAAGGAAAAAC  1041
       ||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  TTACTACATTCAACATCACTATATGACCACATGTGATAAGAAGG-AAAAC  1048

seq1  AGTCAGATATATTTGTGACACATCCATAAATGGCACATGAATTGACTTCC  1091
      |||||||  |||||||||| ||| ||||||||||| ||| ||||||||||
seq2  AGTCAGAATTATTTGTGAC-CAT-CATAAATGGCA-ATG-ATTGACTTCC  1094

seq1  CTATACCATGGGATACAAAAGGAAACATCACC  1123
      || || |||||||||| ||||| |||||||||
seq2  CT-TA-CATGGGATAC-AAAGGGAACATCACC  1123