BAC Information

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BAC

Clone NameB6Ng01-075L05
Chromosome18 (Build37)
Map Location 89,599,963 - 89,741,470
singlet/doubletdoublet
Overlap geneDok6
Upstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075L05.bB6Ng01-075L05.g
ACCDH892187DH892188
length1,229979
definitionDH892187|Mus musculus domesticus DNA, BAC clone: B6Ng01-075L05, 5' end.DH892188|Mus musculus domesticus DNA, BAC clone: B6Ng01-075L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,740,195 - 89,741,470)(89,599,963 - 89,600,945)
sequence
gaattctacatcatctgaaggctgctagtagaatttttgcttccaggcac
ctgggatgacagtcttataacccacgcctacagtgtcacacctactccaa
cagggccacacctcttaatagtgccattctctgggcccagcatacacaaa
ccatcacaatacactgttgtaaatactataatttctaagttatttgtcat
accattatcacctaaagactatgtaaatatcattatggcctctggatttc
aaaataataggaaaaagagcttaaaagctccataaagatgtaattttttt
tggtattttcagtttgtggttgctgaatattcagatgtacatagacataa
agatcaaattttagataatatcaattctaacataacagcatgcataataa
ctcatttctagatttgtatcatataatgtggaatagtatttaaatagtat
ttcacatttgccaagtatataaaagataaatattgtagatactggtaatg
aacactctggaatattcataaagaaacagacctatgaggaaaaatgagtc
agagcacatgataaatgtcacaagtggctttaagaatgagttacatattt
tgaattggaggacattcatatttatctgagaaaagagttcagtttaagga
agcagttactgggaaatggatgctaaatacagttgttgaaaagcaacaat
aatatttcaatggaaattttgtcaggaagttactgaagtatatgaattat
ctgaatcacttcactgtgtgaagtgatataaatatttaaattattatttt
gaaagctcagaaatagaataaagaaagtgacttttatcaattgaggtaat
cattgtaataatattaaaccatgaaactcccatatattcttactgcaaaa
tcaatttttctatcctaacaacattttataaaactcagctctaaactctt
gttttaaaacaaacaaacaaacaaacaacaaacaaacgacagaatacaga
acagtttctcattgaatattgggcagattagtaataaagatatattcatt
tagagatggatgagaggatatgatttatcgtacgtgatcattttaactaa
aataaacatcttttctttctgagacattaggtttatcatggaagttaaca
ctttaagggtagaattcttttctactggcatgagtactcttagctaggaa
tttttatggtaatcttgtcacataatcat
gaattctttctgctctggccatttcattcaaaatcaagagagcttgaatt
ggtaggctaaaatcaattgtgtggctgaaattcatgcttggcaaaaaagc
agaggaacagtatgaactgagttacaaggagtaacaaccaagcaagaggt
taaggaacagaaagacaaatgagaaagtccactgagtcaaacagtattaa
ataatcaataagaagtatggagaaagtgattattcaaaaatgagaaccat
agcaatatccttagtaccagaaagttcacggaagccagagtgaagggaat
aaaggtcaaacacagcagaggaggcaaaatcaaattcaaacctatgattt
attttcaagatcccattctttcagaatattttatgcatctcttatattgt
gcatcctatccacaatcctggatgagtgtactgattgaattctcatgaaa
acctaagctggactagggagaaaattaaactctctccattggatgattta
aggtaaaggacacaggtaccctgcattagatagtgagctgtgaaggtaaa
aatcagaaggtgaagaatttggtgagggcagacagccttttcttgagttg
ttaactttctacactgattcatctgacagtcatatttgtctcatgcattc
atagtttataagataactctaccatcaccagttcattatatctcttgagt
ggactaaaatatattttcaggaatacattggataaaaattagcttaattt
tagcctttgatagcttaatactgctaatcagagtgaataaatcacttttt
tagcttagaatcattaacagaaatatggatttattttcctggattgagca
atttaagacttgaatggagtacaaccatgaactggaaagagaggcccatt
ggacacgcaaactgtatatgccccagtacaggggaccgcagggcaaaaaa
aggggatgagtggtagggaagtgggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89740195_89741470
seq2: B6Ng01-075L05.b_42_1270 (reverse)

seq1  ATGATTATGTGACAAGTATAACTATTAAAAAATCTCTTAGCTAGCAGTTT  50
      |||||||||||||||| || || ||  |||||| || ||||||  ||  |
seq2  ATGATTATGTGACAAG-ATTACCAT--AAAAAT-TCCTAGCTA--AGAGT  44

seq1  ACTTCATGACAAGTAAGAAAAGATATCTACCCATAAAAGTGTTTAAAACT  100
      || ||||| | ||| ||||||||  ||||||| | ||||||||   ||||
seq2  AC-TCATG-CCAGT-AGAAAAGAATTCTACCC-TTAAAGTGTT---AACT  87

seq1  TCTCATGATAAACCTAATTGTCTCAGGAAAAGAAAGAATGTTTATTTTTA  150
      || |||||||||||||| ||||||||  |||||||  ||||||| |||||
seq2  TC-CATGATAAACCTAA-TGTCTCAG--AAAGAAAAGATGTTTA-TTTTA  132

seq1  GTTTAAAAATTGATTCACGTTAACCGATAAATCATATCCTTCTCATCCAT  200
      |||   ||| ||| ||||||    ||||||||||||||| ||||||||| 
seq2  GTT---AAAATGA-TCACGT---ACGATAAATCATATCC-TCTCATCCA-  173

seq1  TCTCTAAATGAATATTATTCCTTTTATTTACTAATCTTGCCCAATTATTT  250
      |||||||||||||| |||  ||||   ||||||||| ||||||||   ||
seq2  TCTCTAAATGAATA-TAT--CTTT--ATTACTAATC-TGCCCAAT--ATT  215

seq1  CAATTGAGAAACTGTTTCTGTATTTCTGTCGTTTTGTTTGTTTTGTTTTG  300
      ||| |||||||||| ||||||| |||||||| ||||||||  ||||||  
seq2  CAA-TGAGAAACTG-TTCTGTA-TTCTGTCG-TTTGTTTG--TTGTTT--  257

seq1  TTTTGTTTTGTTTTGTTTTTAAAAACAAGAGTTTAGAGCTGAGTTTTATA  350
       |||||||   ||||||||  |||||||||||||||||||||||||||||
seq2  GTTTGTTT--GTTTGTTTT--AAAACAAGAGTTTAGAGCTGAGTTTTATA  303

seq1  AAATGTTGTTAGGATAGAAAAATTGATTTTGCAGTAAGAATATATGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTTAGGATAGAAAAATTGATTTTGCAGTAAGAATATATGGGAG  353

seq1  TTTCATGGTTTAATATTATTACAATGATTACCTCAATTGATAAAAGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGTTTAATATTATTACAATGATTACCTCAATTGATAAAAGTCAC  403

seq1  TTTCTTTATTCTATTTCTGAGCTTTCAAAATAATAATTTAAATATTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATTCTATTTCTGAGCTTTCAAAATAATAATTTAAATATTTATA  453

seq1  TCACTTCACACAGTGAAGTGATTCAGATAATTCATATACTTCAGTAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCACACAGTGAAGTGATTCAGATAATTCATATACTTCAGTAACTT  503

seq1  CCTGACAAAATTTCCATTGAAATATTATTGTTGCTTTTCAACAACTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAAAATTTCCATTGAAATATTATTGTTGCTTTTCAACAACTGTAT  553

seq1  TTAGCATCCATTTCCCAGTAACTGCTTCCTTAAACTGAACTCTTTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCCATTTCCCAGTAACTGCTTCCTTAAACTGAACTCTTTTCTCA  603

seq1  GATAAATATGAATGTCCTCCAATTCAAAATATGTAACTCATTCTTAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATATGAATGTCCTCCAATTCAAAATATGTAACTCATTCTTAAAGC  653

seq1  CACTTGTGACATTTATCATGTGCTCTGACTCATTTTTCCTCATAGGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTGACATTTATCATGTGCTCTGACTCATTTTTCCTCATAGGTCTG  703

seq1  TTTCTTTATGAATATTCCAGAGTGTTCATTACCAGTATCTACAATATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATGAATATTCCAGAGTGTTCATTACCAGTATCTACAATATTTA  753

seq1  TCTTTTATATACTTGGCAAATGTGAAATACTATTTAAATACTATTCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATATACTTGGCAAATGTGAAATACTATTTAAATACTATTCCACA  803

seq1  TTATATGATACAAATCTAGAAATGAGTTATTATGCATGCTGTTATGTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGATACAAATCTAGAAATGAGTTATTATGCATGCTGTTATGTTAG  853

seq1  AATTGATATTATCTAAAATTTGATCTTTATGTCTATGTACATCTGAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATATTATCTAAAATTTGATCTTTATGTCTATGTACATCTGAATAT  903

seq1  TCAGCAACCACAAACTGAAAATACCAAAAAAAATTACATCTTTATGGAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAACCACAAACTGAAAATACCAAAAAAAATTACATCTTTATGGAGC  953

seq1  TTTTAAGCTCTTTTTCCTATTATTTTGAAATCCAGAGGCCATAATGATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGCTCTTTTTCCTATTATTTTGAAATCCAGAGGCCATAATGATAT  1003

seq1  TTACATAGTCTTTAGGTGATAATGGTATGACAAATAACTTAGAAATTATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGTCTTTAGGTGATAATGGTATGACAAATAACTTAGAAATTATA  1053

seq1  GTATTTACAACAGTGTATTGTGATGGTTTGTGTATGCTGGGCCCAGAGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACAACAGTGTATTGTGATGGTTTGTGTATGCTGGGCCCAGAGAA  1103

seq1  TGGCACTATTAAGAGGTGTGGCCCTGTTGGAGTAGGTGTGACACTGTAGG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTATTAAGAGGTGTGGCCCTGTTGGAGTAGGTGTGACACTGTAGG  1153

seq1  CGTGGGTTATAAGACTGTCATCCCAGGTGCCTGGAAGCAAAAATTCTACT  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGTTATAAGACTGTCATCCCAGGTGCCTGGAAGCAAAAATTCTACT  1203

seq1  AGCAGCCTTCAGATGATGTAGAATTC  1276
      ||||||||||||||||||||||||||
seq2  AGCAGCCTTCAGATGATGTAGAATTC  1229

seq1: chr18_89599963_89600945
seq2: B6Ng01-075L05.g_68_1045

seq1  GAATTCTTTCTGCTCTGGCCATTTCATTCAAAATCAAGAGAGCTTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGCTCTGGCCATTTCATTCAAAATCAAGAGAGCTTGAATT  50

seq1  GGTAGGCTAAAATCAATTGTGTGGCTGAAATTCATGCTTGGCAAAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCTAAAATCAATTGTGTGGCTGAAATTCATGCTTGGCAAAAAAGC  100

seq1  AGAGGAACAGTATGAACTGAGTTACAAGGAGTAACAACCAAGCAAGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACAGTATGAACTGAGTTACAAGGAGTAACAACCAAGCAAGAGGT  150

seq1  TAAGGAACAGAAAGACAAATGAGAAAGTCCACTGAGTCAAACAGTATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAACAGAAAGACAAATGAGAAAGTCCACTGAGTCAAACAGTATTAA  200

seq1  ATAATCAATAAGAAGTATGGAGAAAGTGATTATTCAAAAATGAGAACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAATAAGAAGTATGGAGAAAGTGATTATTCAAAAATGAGAACCAT  250

seq1  AGCAATATCCTTAGTACCAGAAAGTTCACGGAAGCCAGAGTGAAGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATCCTTAGTACCAGAAAGTTCACGGAAGCCAGAGTGAAGGGAAT  300

seq1  AAAGGTCAAACACAGCAGAGGAGGCAAAATCAAATTCAAACCTATGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCAAACACAGCAGAGGAGGCAAAATCAAATTCAAACCTATGATTT  350

seq1  ATTTTCAAGATCCCATTCTTTCAGAATATTTTATGCATCTCTTATATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAGATCCCATTCTTTCAGAATATTTTATGCATCTCTTATATTGT  400

seq1  GCATCCTATCCACAATCCTGGATGAGTGTACTGATTGAATTCTCATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTATCCACAATCCTGGATGAGTGTACTGATTGAATTCTCATGAAA  450

seq1  ACCTAAGCTGGACTAGGGAGAAAATTAAACTCTCTCCATTGGATGATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGCTGGACTAGGGAGAAAATTAAACTCTCTCCATTGGATGATTTA  500

seq1  AGGTAAAGGACACAGGTACCCTGCATTAGATAGTGAGCTGTGAAGGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGGACACAGGTACCCTGCATTAGATAGTGAGCTGTGAAGGTAAA  550

seq1  AATCAGAAGGTGAAGAATTTGGTGAGGGCAGACAGCCTTTTCTTGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAAGGTGAAGAATTTGGTGAGGGCAGACAGCCTTTTCTTGAGTTG  600

seq1  TTAACTTTCTACACTGATTCATCTGACAGTCATATTTGTCTCATGCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTCTACACTGATTCATCTGACAGTCATATTTGTCTCATGCATTC  650

seq1  ATAGTTTATAAGATAACTCTACCATCACCAGTTCATTATATCTCTTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTATAAGATAACTCTACCATCACCAGTTCATTATATCTCTTGAGT  700

seq1  GGACTAAAATATATTTTCAGGAATACATTGGATAAAAATTAGCTTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAAATATATTTTCAGGAATACATTGGATAAAAATTAGCTTAATTT  750

seq1  TAGCCTTTGATAGCTTAATACTGCTAATCAGAGTGAATAAATCACTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTGATAGCTTAATACTGCTAATCAGAGTGAATAAATCACTTTTT  800

seq1  TAGCTTAGAATCATTAACAGAAATATGGATTTATTTTCCTGGATTGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAGAATCATTAACAGAAATATGGATTTATTTTCCTGGATTGAGCA  850

seq1  ATTTAAGACTTGAATGGAGTACAACCATGAACTGGAAAGAGAGGCCCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGACTTGAATGGAGTACAACCATGAACTGGAAAGAGAGGCCCATT  900

seq1  GGACACGCAAACTGTATATGCCCCAGTACAGGGGACCGCCAGGGCCAAAA  950
      |||||||||||||||||||||||||||||||||||||| ||||||  |||
seq2  GGACACGCAAACTGTATATGCCCCAGTACAGGGGACCG-CAGGGC--AAA  947

seq1  AAAAGGGGAATGAGTGGGTAGGGAAGTGGGGGG  983
      |||||||| |||||| |||||||||||||||||
seq2  AAAAGGGG-ATGAGT-GGTAGGGAAGTGGGGGG  978