BAC Information

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BAC

Clone NameB6Ng01-075N08
Chromosome19 (Build37)18 (Build37)
Map Location 29,288,547 - 29,289,6746,158,499 - 6,158,581
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238
Downstream geneJak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075N08.bB6Ng01-075N08.g
ACCDH892281DH892282
length1,15289
definitionDH892281|Mus musculus domesticus DNA, BAC clone: B6Ng01-075N08, 5' end.DH892282|Mus musculus domesticus DNA, BAC clone: B6Ng01-075N08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,288,547 - 29,289,674)(6,158,499 - 6,158,581)
sequence
gaattcaatttccagcaaccacatggtggctcacagttgtctgagatggc
atctgatgccctcttctggtgtgtctgaagacagtgacggtgtactcaca
tctacaaaataaatctttacacacacacacacacacacacacacacacac
acacacacacacacatttggtaagaatactatatacccaaataatttatt
acattgcttacattttcttcgattaacttcttcatagaaaatacttctga
ggtcataggcaaaacacaattttctctcctacttaacaaagacactttaa
aaatcaatacaaagccgggcgtggtggcgcacacctttaatcccagcact
cgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctac
aaagtgagctccaggtcagccagggctatacagagaaaccctgtctcgaa
aaaacaaaaaacaaaacaagcaaacaaaaaatcaatacaagactataaaa
ctaccttgtaggaattcaaaatgataaaccctgcttggtcaaggttttta
taaagctcagggcccagcttcactcttagttgtaccacagtaccacactc
gttaaagcaggacgtttaacatgacattagcttcccttccttgaccaggt
ttcctccttctgttctacatgattacttggcctgagtgtagctgtgttgt
cgctttaaaatacctcctgaaattatcttcatggttaatcagtacaaatg
cagatctgggcatagcacctaataaaatagagcaagctatcccaatatat
tgcatatccatgactatcttcagaataggcgcttgtgagaactggataag
aggacccagcaaccacacttgtgtcctgaggcttttagagatcggcttga
ctgttggtggcatattggctatgacccttcaccaagatgaaaggctgggg
gcaaggagaactggtgaaggttggagctagctttgggctacatagcatga
acctgtccttgtatactttttccttatttttctccatccgttggcacaag
ccagacaattaaaatgcccagcttaaatggttcagatggggggtcccttc
tgtgaacacatcacatgtggtgtggtgtcacgctctggttctgaagcctc
ag
tcttagttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgca
ttggtaatatgtataggtgtagtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29288547_29289674
seq2: B6Ng01-075N08.b_46_1197 (reverse)

seq1  CTGA-GCTTCAGACC---AGCGTGACA-CACACCACATGTGATGTG-TCA  44
      |||| |||||||| |   ||||||||| |||||||||||||||||| |||
seq2  CTGAGGCTTCAGAACCAGAGCGTGACACCACACCACATGTGATGTGTTCA  50

seq1  CCAGAGGGA-CCCCCATCTGAACCATCTAAGCTGGGCATTTTAAT--GCT  91
      |   ||||| |||||||||||||||| ||||||||||||||||||   ||
seq2  CAGAAGGGACCCCCCATCTGAACCATTTAAGCTGGGCATTTTAATTGTCT  100

seq1  GGCTTGTGCAAAC-GATGGAG-AAAATAAGG-AAAAGTATACAA-GACAG  137
      ||||||||| ||| ||||||| ||||||||| |||||||||||| |||||
seq2  GGCTTGTGCCAACGGATGGAGAAAAATAAGGAAAAAGTATACAAGGACAG  150

seq1  GTTCATGCTATGTAGCCC-AAGCTAGCTTCAACC-TCACCAGTTCTCCT-  184
      |||||||||||||||||| ||||||||| ||||| |||||||||||||| 
seq2  GTTCATGCTATGTAGCCCAAAGCTAGCTCCAACCTTCACCAGTTCTCCTT  200

seq1  -GCCCCAGCC-TTCATCTTGCTG-AGGGTCATAGCC-ATATGCCACC-AC  229
        |||||||| ||||||||| || |||||||||||| |||||||||| ||
seq2  GCCCCCAGCCTTTCATCTTGGTGAAGGGTCATAGCCAATATGCCACCAAC  250

seq1  AGTC-AGCCGATCTCTAAAAGCCTCAGGACACAAGTGTGGTTGCTGGGTC  278
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGCCGATCTCTAAAAGCCTCAGGACACAAGTGTGGTTGCTGGGTC  300

seq1  CTCTTATCCAGTTCTCACAAGCGCCTATTCTGAAGATAGTCATGGATATG  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATCCAGTTCTCACAAGCGCCTATTCTGAAGATAGTCATGGATATG  350

seq1  CAATATATTGGGATAGCTTGCTCTA-TTTATTAGGTGCTATGCCCAGATC  377
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAATATATTGGGATAGCTTGCTCTATTTTATTAGGTGCTATGCCCAGATC  400

seq1  TGCATTTGTACTGATTAACCATGAAGATAATTTCAGGAGGTA-TTTAAAG  426
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCATTTGTACTGATTAACCATGAAGATAATTTCAGGAGGTATTTTAAAG  450

seq1  CGACAACACAGCTACACTCAGGCCAAGTAATCATGTAGAACAGAAGGAGG  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAACACAGCTACACTCAGGCCAAGTAATCATGTAGAACAGAAGGAGG  500

seq1  AAACCTGGTCAAGGAAGGGAAGCTAATGTCATGTTAAACGTCCTGCTTTA  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGTCAAGGAAGGGAAGCTAATGTCATGTTAAACGTCCTGCTTTA  550

seq1  ACGAGTGTGGTACTGTGGTACAACTAAGAGTGAAGCTGGGCCCTGAGCTT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTGTGGTACTGTGGTACAACTAAGAGTGAAGCTGGGCCCTGAGCTT  600

seq1  TATAAAAACCTTGACCAAGCAGGGTTTATCATTTTGAATTCCTACAAGGT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAACCTTGACCAAGCAGGGTTTATCATTTTGAATTCCTACAAGGT  650

seq1  AGTTTTATAGTCTTGTATTGATTTTTTGTTTGCTTGTTTTGTTTTTTGTT  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATAGTCTTGTATTGATTTTTTGTTTGCTTGTTTTGTTTTTTGTT  700

seq1  TTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGACCTGGAGCTCACT  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGACCTGGAGCTCACT  750

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC  800

seq1  CGAGTGCTGGGATTAAAGGTGTGCGCCACCACGCCCGGCTTTGTATTGAT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCTGGGATTAAAGGTGTGCGCCACCACGCCCGGCTTTGTATTGAT  850

seq1  TTTTAAAGTGTCTTTGTTAAGTAGGAGAGAAAATTGTGTTTTGCCTATGA  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGTGTCTTTGTTAAGTAGGAGAGAAAATTGTGTTTTGCCTATGA  900

seq1  CCTCAGAAGTATTTTCTATGAAGAAGTTAATCGAAGAAAATGTAAGCAAT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAGTATTTTCTATGAAGAAGTTAATCGAAGAAAATGTAAGCAAT  950

seq1  GTAATAAATTATTTGGGTATATAGTATTCTTACCAAATGTGTGTGTGTGT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAATTATTTGGGTATATAGTATTCTTACCAAATGTGTGTGTGTGT  1000

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGATTTATTTTGTA  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGATTTATTTTGTA  1050

seq1  GATGTGAGTACACCGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAG  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAGTACACCGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAG  1100

seq1  ATGCCATCTCAGACAACTGTGAGCCACCATGTGGTTGCTGGAAATTGAAT  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATCTCAGACAACTGTGAGCCACCATGTGGTTGCTGGAAATTGAAT  1150

seq1  TC  1128
      ||
seq2  TC  1152

seq1: chr18_6158499_6158581
seq2: B6Ng01-075N08.g_82_161 (reverse)

seq1  CACACACACACACACACCTGGAATGTATATACATACATAT-----ATACA  45
      |||||||||||||||||        || |   ||||||||     || ||
seq2  CACACACACACACACAC--------TACACCTATACATATTACCAATGCA  42

seq1  AGCACACACACACACACACACACACACACACACACACC  83
       |||||||||||||||||||||||||||||||||||||
seq2  TGCACACACACACACACACACACACACACACACACACC  80