BAC Information

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BAC

Clone NameB6Ng01-076E14
Chromosome18 (Build37)
Map Location 27,136,301 - 27,279,846
singlet/doubletdoublet
Overlap geneEG665977
Upstream geneLOC100041274
Downstream geneEG665646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076E14.bB6Ng01-076E14.g
ACCDH892596DH892597
length6531,168
definitionDH892596|Mus musculus domesticus DNA, BAC clone: B6Ng01-076E14, 5' end.DH892597|Mus musculus domesticus DNA, BAC clone: B6Ng01-076E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,136,301 - 27,136,952)(27,278,675 - 27,279,846)
sequence
gaattctcagggttgagaatgattaatgaaaggggcttcaagggtgagtt
tttagaggaataaaatcatttctttttagaccttagtgtgggtgatatct
gactccatgcatttgtcaaagcctgataaaatattgagaaaatttttctc
aaagaaagaaactttatcctatgccaagtttagctttaataaaatgtcaa
ggatatttgtgacaaattccatgatgggtataattttttgacagatgtgt
ttcttaataccattacagtggtccaagaggctccagtcaaaggactttta
ggtgaacctaccacagttgtatgtagtttgatacttccatgggtaccatt
accagttctgaaacttctttacatacataccatggtagaataaagaagta
ctatgttgcaaatgtagggatccatgattctttttgagaaattagaaaag
ttagaaaattgggaaaaattctgtgacacaattgtgcaggtatcagtgag
tgaattttgttttaatgtgcatataaattcagaaatatatatttctgtgt
ttacaatgaatatatatatatatatatatatatatatatatatatatata
tacgcattaacatacaggacatgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtg
gaattcactgtccctttcagataacaccagaaaaatacctacttcaaatt
atggcaagataaaacaggaagaaatatatcactgtcttttaattttctta
ataaataaggggttaaattctatattacagtactagtattttatacagta
cagtatgattagttttgatatatatttacactgaacaccagaccagaaat
aacttacagggaatgcatttatttcatttcgtaactccaaataacatgtc
atcatacctccggaaccaggaagtcaaggcaggaacttaggagcaaaatc
tgaagcagagaccatgtaagaaagcttctgtctcataccctgtacatttc
tcatcttgctttaatacataagcaagggcttcctgtccagggatatcacc
acccacagtggtctgggtcctctaacatcaattgtgaattaagaatatgc
caaataaacatgcccacaggcttatctgatacaaggaattccacaagtga
ggttctgtcttctgaaatgattctaggttgtatcaagttggcaaaaatcc
ctgcccttaataaacagtccttgtatattaagagttaatattaaaatagt
gttcatatatcaggaacacttaattccctcagtgctaaaagagatcacag
tatgtgttcctgatttttcttggtaaaatcttgtgttttaagaacctgtc
ttatgcttccatgtaaagccaagtcaacaaattgatgaaatcacagtaaa
taacctaataacataagaaattgaatctcctaactgccaagcactgtaga
tcagatgtggaggaatgtgactgttattcattaacccccaatacaaatga
tgagcaccttaatggtcaatgtttcttggagtagattctgagtcagaaga
acttaagtgatgggtagttgctgttcttttagcccatttactttgtctgt
gctcctaccctatattttttggaacaaggattataaaacattcctactca
ctccttggacaaatggtaagatactgttccaaaggtaacattctgagtat
tcaaaggaaaagattttatgttactattccatgagaagcctagctattat
tgttttagtttaccatttcacagtaatttaaatgctgcctatcggatcat
catgaggtatatttctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27136301_27136952
seq2: B6Ng01-076E14.b_50_702

seq1  GAATTCTCAGGGTTGAGAATGATTAACTGAAAGGGGCTTCAAGGGTGAGT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTCTCAGGGTTGAGAATGATTAA-TGAAAGGGGCTTCAAGGGTGAGT  49

seq1  TTTTAGAGGAATAAAATCATTTCTTTTTAGACCTTAGTGTGGGTGATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGGAATAAAATCATTTCTTTTTAGACCTTAGTGTGGGTGATATC  99

seq1  TGACTCCATGCATTTGTCAAAGCCTGATAAAATATTGAGAAAATTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCATGCATTTGTCAAAGCCTGATAAAATATTGAGAAAATTTTTCT  149

seq1  CAAAGAAAGAAACTTTATCCTATGCCAAGTTTAGCTTTAATAAAATGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAGAAACTTTATCCTATGCCAAGTTTAGCTTTAATAAAATGTCA  199

seq1  AGGATATTTGTGACAAATTCCATGATGGGTATAATTTTTTGACAGATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTTGTGACAAATTCCATGATGGGTATAATTTTTTGACAGATGTG  249

seq1  TTTCTTAATACCATTACAGTGGTCCAAGAGGCTCCAGTCAAAGGACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAATACCATTACAGTGGTCCAAGAGGCTCCAGTCAAAGGACTTTT  299

seq1  AGGTGAACCTACCACAGTTGTATGTAGTTTGATACTTCCATGGGTACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACCTACCACAGTTGTATGTAGTTTGATACTTCCATGGGTACCAT  349

seq1  TACCAGTTCTGAAACTTCTTTACATACATACCATGGTAGAATAAAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTTCTGAAACTTCTTTACATACATACCATGGTAGAATAAAGAAGT  399

seq1  ACTATGTTGCAAATGTAGGGATCCATGATTCTTTTTGAGAAATTAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTTGCAAATGTAGGGATCCATGATTCTTTTTGAGAAATTAGAAAA  449

seq1  GTTAGAAAATTGGGAAAAATTCTGTGACACAATTGTGCAGGTATCAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAAATTGGGAAAAATTCTGTGACACAATTGTGCAGGTATCAGTGA  499

seq1  GTGAATTTTGTTTTAATGTGCATATAAATTCAGAAATATATATTTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTTGTTTTAATGTGCATATAAATTCAGAAATATATATTTCTGTG  549

seq1  TTTACAATGA--ATATATATATATATATATATATATATATATATATATAT  598
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATGAATATATATATATATATATATATATATATATATATATATAT  599

seq1  ATACGCATTAACATACAGGACATGTGTGTGTGTGTGTGTGTGTGTGTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCATTAACATACAGGACATGTGTGTGTGTGTGTGTGTGTGTGTGTG  649

seq1  TGTG  652
      ||||
seq2  TGTG  653

seq1: chr18_27278675_27279846
seq2: B6Ng01-076E14.g_68_1235 (reverse)

seq1  TAAGAAATATACTACATGTATGTTCTGTATAGGCAGAGATTAAATTAACT  50
      ||||||||||||  |||| ||| || | ||||||||   ||||||| |||
seq2  TAAGAAATATACCTCATG-ATGATCCG-ATAGGCAGCATTTAAATT-ACT  47

seq1  GTGAAAATGGTAAACTATAACAATAATTACTTAGC-TCTCATGGGAATAG  99
      ||| ||||||||||||| |||||||||  ||  || |||||| |||||||
seq2  GTG-AAATGGTAAACTAAAACAATAATAGCTAGGCTTCTCAT-GGAATAG  95

seq1  T-ACATAAAATCTTTTCCTTTTGATACTCAGATGTTTCCCTTTGAATCTG  148
      | |||||||||||||||||||  |||||||||   || |||||| | | |
seq2  TAACATAAAATCTTTTCCTTTGAATACTCAGAATGTTACCTTTGGAACAG  145

seq1  TTTTCTTTACATTTTGTCCAAGGAGTGAGTAGGGATG-TTTATAATTCTT  197
      | |   ||||  ||||||||||||||||||||| ||| |||||||| |||
seq2  TAT--CTTACCATTTGTCCAAGGAGTGAGTAGGAATGTTTTATAATCCTT  193

seq1  GTTTCAAAAAATATAGGGTAGGAGCACAGACAAAGTAAATGGGCT-AAAG  246
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTCCAAAAAATATAGGGTAGGAGCACAGACAAAGTAAATGGGCTAAAAG  243

seq1  CACAGCAACTTACCATCACTTTAAGTTCTTCTGACTCAGAATCTACTCCA  296
       |||||||||  ||||||| ||||||||||||||||||||||||||||||
seq2  AACAGCAACTACCCATCAC-TTAAGTTCTTCTGACTCAGAATCTACTCCA  292

seq1  AGAAACATTGACCATTAAGGTGCTCATCATTTGTATTGGGGGTTAATGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTGACCATTAAGGTGCTCATCATTTGTATTGGGGGTTAATGAA  342

seq1  TAACAGTCACATTCCTCCACATCTGATCTACAGTGCTTGGCAGTTAGGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTCACATTCCTCCACATCTGATCTACAGTGCTTGGCAGTTAGGAG  392

seq1  ATTCAATTTCTTATGTTATTAGGTTATTTACTGTGATTTCATCAATTTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTTCTTATGTTATTAGGTTATTTACTGTGATTTCATCAATTTGT  442

seq1  TGACTTGGCTTTACATGGAAGCATAAGACAGGTTCTTAAAACACAAGATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGCTTTACATGGAAGCATAAGACAGGTTCTTAAAACACAAGATT  492

seq1  TTACCAAGAAAAATCAGGAACACATACTGTGATCTCTTTTAGCACTGAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAGAAAAATCAGGAACACATACTGTGATCTCTTTTAGCACTGAGG  542

seq1  GAATTAAGTGTTCCTGATATATGAACACTATTTTAATATTAACTCTTAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGTGTTCCTGATATATGAACACTATTTTAATATTAACTCTTAAT  592

seq1  ATACAAGGACTGTTTATTAAGGGCAGGGATTTTTGCCAACTTGATACAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGGACTGTTTATTAAGGGCAGGGATTTTTGCCAACTTGATACAAC  642

seq1  CTAGAATCATTTCAGAAGACAGAACCTCACTTGTGGAATTCCTTGTATCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATCATTTCAGAAGACAGAACCTCACTTGTGGAATTCCTTGTATCA  692

seq1  GATAAGCCTGTGGGCATGTTTATTTGGCATATTCTTAATTCACAATTGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCCTGTGGGCATGTTTATTTGGCATATTCTTAATTCACAATTGAT  742

seq1  GTTAGAGGACCCAGACCACTGTGGGTGGTGATATCCCTGGACAGGAAGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGGACCCAGACCACTGTGGGTGGTGATATCCCTGGACAGGAAGCC  792

seq1  CTTGCTTATGTATTAAAGCAAGATGAGAAATGTACAGGGTATGAGACAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTATGTATTAAAGCAAGATGAGAAATGTACAGGGTATGAGACAGA  842

seq1  AGCTTTCTTACATGGTCTCTGCTTCAGATTTTGCTCCTAAGTTCCTGCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTTACATGGTCTCTGCTTCAGATTTTGCTCCTAAGTTCCTGCCT  892

seq1  TGACTTCCTGGTTCCGGAGGTATGATGACATGTTATTTGGAGTTACGAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCCTGGTTCCGGAGGTATGATGACATGTTATTTGGAGTTACGAAA  942

seq1  TGAAATAAATGCATTCCCTGTAAGTTATTTCTGGTCTGGTGTTCAGTGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAATGCATTCCCTGTAAGTTATTTCTGGTCTGGTGTTCAGTGTA  992

seq1  AATATATATCAAAACTAATCATACTGTACTGTATAAAATACTAGTACTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATCAAAACTAATCATACTGTACTGTATAAAATACTAGTACTGT  1042

seq1  AATATAGAATTTAACCCCTTATTTATTAAGAAAATTAAAAGACAGTGATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAATTTAACCCCTTATTTATTAAGAAAATTAAAAGACAGTGATA  1092

seq1  TATTTCTTCCTGTTTTATCTTGCCATAATTTGAAGTAGGTATTTTTCTGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCCTGTTTTATCTTGCCATAATTTGAAGTAGGTATTTTTCTGG  1142

seq1  TGTTATCTGAAAGGGACAGTGAATTC  1172
      ||||||||||||||||||||||||||
seq2  TGTTATCTGAAAGGGACAGTGAATTC  1168