BAC Information

Click to search

BAC

Clone NameB6Ng01-076M19
Chromosome18 (Build37)
Map Location 80,668,221 - 80,773,156
singlet/doubletdoublet
Overlap geneLOC100039336, A430076E10Rik, LOC100039348
Upstream geneLOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389
Downstream geneNfatc1, Atp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076M19.bB6Ng01-076M19.g
ACCDH892958DH892959
length1,1451,073
definitionDH892958|Mus musculus domesticus DNA, BAC clone: B6Ng01-076M19, 5' end.DH892959|Mus musculus domesticus DNA, BAC clone: B6Ng01-076M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,668,221 - 80,669,371)(80,772,107 - 80,773,156)
sequence
gaattccagcctgatttacttcactgtttttcaaaacctggaccataatt
acctcatccattttcctggctgagataggcttctttcagcttcaactttg
ttctctgatgagcagactctggtcaatgctagtgaggctaaaacaaagag
gcagttaagaggagagataagaggactgccagggcaagggtaattaaccc
ctcgggaaggccagatttcccacgcttgcagaccttcatctgcaagtttg
tatgccatggcctgtttcatgcatcaacttgtgactttaaaaacatgctt
cgagcacatatcttgtaaaggtaagcgaacaccagcttggactgggctgt
gatagatgtaaaactacatacaacatttctaaaataggaaaagcttcgtg
acatcgggcttagcattgatttcttagcatgacagagatccacaggcaag
aacaataaggacagataaaattacatcaagcttttaagatgtctgctatc
agaggacacaacatgaaaatacagcctgccaaataagaaagcatttgcaa
ggtgttcggggctgatgtccagaacatgcaaaggaaatcaaagcaagaat
caaacaacgtaattttaaagtgggcaggcggggtttgatcttcagaactg
agcgcaaaaagaggcgaagtaggcattttctcaaaggaagtatatctttt
caaatgaacaaaaatagcagggtctggggattagctgagttgtagacttc
ttagctgggatgtataaaggccctgcctttgccccctcaagctacagagg
gaagagaaaaaaataattcattattttgatgtgcctggcaggtcaccacc
accaggtgtgcccgtgaatgaaggatgattacaagtttaaagccagaaag
acacatataacctgtctcaaaacccaagatgatataaatgaccaattatg
tcacgcgagttgccttgactggtgtcaccaggttcttggaatcttactca
aaagccacaagaggaggaaagcaggtagttttattctcagcaaaaacaaa
ggcaaagcagatggatcacaacggagcagtgagctggttttgaacataaa
tgctcaaggcaaagtttattgtttgaaacctcttttaagtccaaa
gaattcaaaagggcaggaacctgtagacaggagctgataacaaggtcatg
aggttgcttactggtttggtcttcatggcttgctcagctttctttcttat
agaacccaggaccacgagcccagggggaggcctacctacaatgacctgga
cgcttccccataattacgaattaggaaaatgctctatagcagtgacttcc
agcctgtggttcacaacccctttgggagtcaaacgaccctttcacggggg
tcacctgagaccatcagaaaacacagaaatttacattatgttttataaca
gtagcaaaattgcagttttgaagtagcaatgagaacaattttaatggctc
ggggtcaccacaatatgaggaactgtgtcaaagcgttgagacattaggaa
ggctgagagcctctaaccctatgcagttgcctagagcagtcttacagagg
catcttcttaatcgaggctccttcctcccagtgataacagcctgtgtcat
gttgacataaagcgagccatcacaggaaggaaatttctcagttgaatttc
agtcactgccctgtctctttcagttcaccccaaagccatctgactcacta
ccctgtctcccaaagctgattgtcccaaagctgtcctcagggtcacgtag
gtcactcgtgtcccctgaggtctctttttctcccagatcatcttgggcct
cacacccgagttctgctcccctgctgctgtggtaacccactcggcctgtg
ctccaagagtgagagatgagatttcaggtcagaaatcattgttagaatgg
gctggggacatggctccatcaataaagtgcttatcaaacatgacactgta
agttcagcccccatcacccccataaaaagccaaggtgtagcagtatatac
ctgcaatcccagaactgagagggagttggtttacaatagggtccctgggg
cttacacccagtgcctccagctcaatcagccatcctccaggaacagtggg
gaccaatttaaaaacagaagtgaagaaagttgcagggacataggggccac
cagtctccacctcgactgggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_80668221_80669371
seq2: B6Ng01-076M19.b_48_1192

seq1  GAATTCCAGCCTGATTTACTTCACTGTTTTTCAAAACCTGGACCATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTGATTTACTTCACTGTTTTTCAAAACCTGGACCATAATT  50

seq1  ACCTCATCCATTTTCCTGGCTGAGATAGGCTTCTTTCAGCTTCAACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCCATTTTCCTGGCTGAGATAGGCTTCTTTCAGCTTCAACTTTG  100

seq1  TTCTCTGATGAGCAGACTCTGGTCAATGCTAGTGAGGCTAAAACAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGATGAGCAGACTCTGGTCAATGCTAGTGAGGCTAAAACAAAGAG  150

seq1  GCAGTTAAGAGGAGAGATAAGAGGACTGCCAGGGCAAGGGTAATTAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAGAGGAGAGATAAGAGGACTGCCAGGGCAAGGGTAATTAACCC  200

seq1  CTCGGGAAGGCCAGATTTCCCACGCTTGCAGACCTTCATCTGCAAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAAGGCCAGATTTCCCACGCTTGCAGACCTTCATCTGCAAGTTTG  250

seq1  TATGCCATGGCCTGTTTCATGCATCAACTTGTGACTTTAAAAACATGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCATGGCCTGTTTCATGCATCAACTTGTGACTTTAAAAACATGCTT  300

seq1  CGAGCACATATCTTGTAAAGGTAAGCGAACACCAGCTTGGACTGGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCACATATCTTGTAAAGGTAAGCGAACACCAGCTTGGACTGGGCTGT  350

seq1  GATAGATGTAAAACTACATACAACATTTCTAAAATAGGAAAAGCTTCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATGTAAAACTACATACAACATTTCTAAAATAGGAAAAGCTTCGTG  400

seq1  ACATCGGGCTTAGCATTGATTTCTTAGCATGACAGAGATCCACAGGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGGGCTTAGCATTGATTTCTTAGCATGACAGAGATCCACAGGCAAG  450

seq1  AACAATAAGGACAGATAAAATTACATCAAGCTTTTAAGATGTCTGCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAGGACAGATAAAATTACATCAAGCTTTTAAGATGTCTGCTATC  500

seq1  AGAGGACACAACATGAAAATACAGCCTGCCAAATAAGAAAGCATTTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACACAACATGAAAATACAGCCTGCCAAATAAGAAAGCATTTGCAA  550

seq1  GGTGTTCGGGGCTGATGTCCAGAACATGCAAAGGAAATCAAAGCAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCGGGGCTGATGTCCAGAACATGCAAAGGAAATCAAAGCAAGAAT  600

seq1  CAAACAACGTAATTTTAAAGTGGGCAGGCGGGGTTTGATCTTCAGAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACGTAATTTTAAAGTGGGCAGGCGGGGTTTGATCTTCAGAACTG  650

seq1  AGCGCAAAAAGAGGCGAAGTAGGCATTTTCTCAAAGGAAGTATATCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCAAAAAGAGGCGAAGTAGGCATTTTCTCAAAGGAAGTATATCTTTT  700

seq1  CAAATGAACAAAAATAGCAGGGTCTGGGGATTAGCTGAGTTGTAGACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAACAAAAATAGCAGGGTCTGGGGATTAGCTGAGTTGTAGACTTC  750

seq1  TTAGCTGGGATGTATAAAGGCCCTGCCTTTGCCCCCTCAAGCTACAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGGGATGTATAAAGGCCCTGCCTTTGCCCCCTCAAGCTACAGAGG  800

seq1  GAAGAGAAAAAAATAATTCATTATTTTGATGTGCCTGGCAGGTCACCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAAAAATAATTCATTATTTTGATGTGCCTGGCAGGTCACCACC  850

seq1  ACCAGGTGTGCCCGTGAATGAAGGATGATTACAAGTTTAAGGCCAGAAAG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACCAGGTGTGCCCGTGAATGAAGGATGATTACAAGTTTAAAGCCAGAAAG  900

seq1  ACACATATAACCTGTCTCAAAAACCCAAGATGATAATAAATGACCAATTA  950
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  ACACATATAACCTGTCTC-AAAACCCAAGATGAT-ATAAATGACCAATTA  948

seq1  TGTCACGGCGAGTTGCCTTGACTGGGTGTCACCAGGTTCTTGGAATCTTA  1000
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTCAC-GCGAGTTGCCTTGACT-GGTGTCACCAGGTTCTTGGAATCTTA  996

seq1  CTCAAAAGCACAC-AGA-GAGGAAAGCAGGGAGTTTTATTCTCAAGCAAA  1048
      ||||||||| ||| ||| |||||||||||| |||||||||||||   |||
seq2  CTCAAAAGC-CACAAGAGGAGGAAAGCAGGTAGTTTTATTCTCAGCAAAA  1045

seq1  ACAAAGGAGCAGAGCAGATGAATCACAAGGGAGCAGTGAGCTG--TTTGA  1096
      ||||||  ||| |||||||| ||||||| ||||||||||||||  |||||
seq2  ACAAAG--GCAAAGCAGATGGATCACAACGGAGCAGTGAGCTGGTTTTGA  1093

seq1  ACTAGAATGCTCAAGGC-GAGGTTATTGTTTGAACCTTTCTTTTATAGAG  1145
      ||   ||||||||||||  || |||||||||||| |  |||||||   ||
seq2  ACATAAATGCTCAAGGCAAAGTTTATTGTTTGAAAC-CTCTTTTA---AG  1139

seq1  TCCAAA  1151
      ||||||
seq2  TCCAAA  1145

seq1: chr18_80772107_80773156
seq2: B6Ng01-076M19.g_97_1141 (reverse)

seq1  AGGCCCAGTCCAAGGCTGGAG-CTGGTGGCCCCTATGTCCCTGCAACTGT  49
      |||||||||| |  | ||||| |||||||||||||||||||||||||| |
seq2  AGGCCCAGTCGA--GGTGGAGACTGGTGGCCCCTATGTCCCTGCAACTTT  48

seq1  CTTCTACCTTCTGTTTTTGAAATAGGGTCCCACTGGTCCTGGA-GATGGC  98
      ||||   ||||||||||| |||| ||  ||||||| ||||||| ||||||
seq2  CTTC--ACTTCTGTTTTT-AAATTGGTCCCCACTGTTCCTGGAGGATGGC  95

seq1  TGATTGAGCTGGAGGCACTGGGGTGTAAGCCCCAGGGACCCTATTGTAAA  148
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGATTGAGCTGGAGGCACT-GGGTGTAAGCCCCAGGGACCCTATTGTAAA  144

seq1  CC-ACTCCCTCTCAGTTCTGGGATTGCAGGTATATACTGCTACACCTTGG  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCCTCTCAGTTCTGGGATTGCAGGTATATACTGCTACACCTTGG  194

seq1  CTTTTTATGGGGGTGATGGGGGCTGAACTTACAGTGTCATGTTTGAATAA  247
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTTTATGGGGGTGATGGGGGCTGAACTTACAGTGTCATGTTTG-ATAA  243

seq1  GCACTTTATTGATGGAGCCATGTCCCCAGCCCATTCTAACAATGATTTCC  297
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCACTTTATTGATGGAGCCATGTCCCCAGCCCATTCTAACAATGATTT-C  292

seq1  TGACCTGAAATCTCATCTCTCACTCTTGGAGCACAGGCCGAGTGGGTTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGAAATCTCATCTCTCACTCTTGGAGCACAGGCCGAGTGGGTTAC  342

seq1  CACAGCAGCAGGGGAGCAGAACTCGGGTGTGAGGCCCAAGATGATCTGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCAGGGGAGCAGAACTCGGGTGTGAGGCCCAAGATGATCTGGG  392

seq1  AGAAAAAGAGACCTCAGGGGACACGAGTGACCTACGTGACCCTGAGGACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAGACCTCAGGGGACACGAGTGACCTACGTGACCCTGAGGACA  442

seq1  GCTTTGGGACAATCAGCTTTGGGAGACAGGGTAGTGAGTCAGATGGCTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGACAATCAGCTTTGGGAGACAGGGTAGTGAGTCAGATGGCTTT  492

seq1  GGGGTGAACTGAAAGAGACAGGGCAGTGACTGAAATTCAACTGAGAAATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAACTGAAAGAGACAGGGCAGTGACTGAAATTCAACTGAGAAATT  542

seq1  TCCTTCCTGTGATGGCTCGCTTTATGTCAACATGACACAGGCTGTTATCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTGTGATGGCTCGCTTTATGTCAACATGACACAGGCTGTTATCA  592

seq1  CTGGGAGGAAGGAGCCTCGATTAAGAAGATGCCTCTGTAAGACTGCTCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGAAGGAGCCTCGATTAAGAAGATGCCTCTGTAAGACTGCTCTA  642

seq1  GGCAACTGCATAGGGTTAGAGGCTCTCAGCCTTCCTAATGTCTCAACGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTGCATAGGGTTAGAGGCTCTCAGCCTTCCTAATGTCTCAACGCT  692

seq1  TTGACACAGTTCCTCATATTGTGGTGACCCCGAGCCATTAAAATTGTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACAGTTCCTCATATTGTGGTGACCCCGAGCCATTAAAATTGTTCT  742

seq1  CATTGCTACTTCAAAACTGCAATTTTGCTACTGTTATAAAACATAATGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTACTTCAAAACTGCAATTTTGCTACTGTTATAAAACATAATGTA  792

seq1  AATTTCTGTGTTTTCTGATGGTCTCAGGTGACCCCCGTGAAAGGGTCGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTGTTTTCTGATGGTCTCAGGTGACCCCCGTGAAAGGGTCGTT  842

seq1  TGACTCCCAAAGGGGTTGTGAACCACAGGCTGGAAGTCACTGCTATAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCAAAGGGGTTGTGAACCACAGGCTGGAAGTCACTGCTATAGAG  892

seq1  CATTTTCCTAATTCGTAATTATGGGGAAGCGTCCAGGTCATTGTAGGTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCTAATTCGTAATTATGGGGAAGCGTCCAGGTCATTGTAGGTAG  942

seq1  GCCTCCCCCTGGGCTCGTGGTCCTGGGTTCTATAAGAAAGAAAGCTGAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCCCTGGGCTCGTGGTCCTGGGTTCTATAAGAAAGAAAGCTGAGC  992

seq1  AAGCCATGAAGACCAAACCAGTAAGCAACCTCATGACCTTGTTATCAGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGAAGACCAAACCAGTAAGCAACCTCATGACCTTGTTATCAGCT  1042

seq1  CCT  1050
      |||
seq2  CCT  1045