BAC Information

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BAC

Clone NameB6Ng01-077I12
Chromosome18 (Build37)
Map Location 41,257,872 - 41,259,021
singlet/doubletsinglet
Overlap genenone
Upstream geneYipf5, Kctd16, EG225416
Downstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077I12.bB6Ng01-077I12.g
ACCDH893479DH893480
length1,2181,142
definitionDH893479|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I12, 5' end.DH893480|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacttaggaataccaaatagctgataagtacctaaagaaatg
ttcaacatccttagtaatcagggaaatgcaaatcaaaacaacccagagat
tccacctcacaccagtcagaatggctaaggtcgaaaactcaggtaagagc
agatgctggcaagattgtgaagaaagaggaaagaggaacactcctccatt
actggtggcactgcaagctggtacaaccattctggaagtcagtttggcag
ttccttaggacctgagaacccaggaatatcactccttggaatatactcag
aagatactccaacatgtaatgaggacacatgctccactatgtttatagca
gccttatttataatagccagaaactggaaagaacccagatgtccctcaac
agaggaatggctacagaaaatgtgtttcatttatgcaatggagtactacc
aggtatttaaaacaatgaatttatgaaattcttaggcaaatagatggatc
tagaggctatcatcctgagcgagataacccaatcccaaaagaacatacat
ggtatgcactcactgataagtggatattagcccagaagcttggcataccc
aagatagaattcacaaaccacatgaaactcaagaagaaggaagaccaaag
tgtggatactttgaccttccttaataggaggaacaaaatacacatggaag
gacttacggagacaaagtgtggagtagagactgaaggaatgatcatccag
agactgcctcacctgggaatccatcctatatactttcaccaaacccagac
actattgtggatgccaacaagtacttgctgacaggagcctgatatagctg
tctcctgagaggctgtgccagtgattgacaaatacagatgtggatgctca
cagccatccattagaatgggcacagggtccccaatggaggagctagagaa
aggacccaatgatctgaagaagtttgcaacctcctttgaagaggaggaca
cattattacctaaccagtatcccagagctcccaaagactaaaccaccaac
caaagtgcacaatgatgggactcatggcttccgcctgcatatgtagcaaa
gaatgcctagtggcatccatgggaggagaggtcttgttctgtgagctcta
tgtccattaggaatgtcagtcagagcaagatagtgatcggtgaccatggg
agaagaagaaggaattgg
gaattcctatgggatatgagcaagaacatagaaagtctcatagtttgata
atatagatctaagtaatactaatttattgtgttcacccacatagaatatt
aaatatgcaaaaggaaaggataaccaaagactaatgataggtatgggttt
catttttgttgttgtttgacagttcaggatcacactcttcactcttcaaa
cattaaacttaactctatatgagatgttattcatacaactatatttgcta
attattttttccttgataagaaaaattttgcttagatatacctgggcatc
aagaacttgactcttttcaaccctgcacaaccctatctacagccaagaca
aataggccaactactgttttaagccaagacagcaaatgaaagccaaagct
ctcctctctcctgctgtagaagccacctcttagggactttacatcctcat
tctagtcacatcaaagctcaaaatgccgagagaagatcctttgaggcaaa
gtaaagcaaaggaggaacaaatgaactgatgctcttctgagtgcatcaag
aaatgcaaatgaactcttttttggacatttgtcctaaatatgttttaatc
attttatatgtatgggtatgtgctgacatgtatgtctggtattcagtgag
gcaataagaggtaaggccagaagaaggtgtcagagctctggaactggtgg
tcagctcccatgttgtgtgctgagaccccagctcctatggaaaaagcagt
cagtattcttatgagtcattcctctagcccttgatttgagcattttaaac
atagcccattttgacttcttctggttccttccctagaacttggaatgtta
atagctttctcttttacttatcactctcatctctagctgggaaacaatca
aggacttctgtctccaatacaactggatgttattcaaatggaatcagaca
atgctttagataaaccgaatggaggataaccaatgccatacccaatactc
tcatttagcctctaaggggaaagttcagtcatcactcttattcattaatg
tcaggtcactgtcctctttaattgagaaaatgagaaattatcaatggaaa
aggcgctcaggacaggaacctcaagcaacagtctagaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_41257872_41259021
seq2: B6Ng01-077I12.g_69_1210 (reverse)

seq1  GAAATTTCTAGAACTGTTGCTTTTGAGTTTCCTGTCCTGAGCTGCCTTTT  50
      |||| |||||| ||||||||  ||||| |||||||||||||| |||||||
seq2  GAAA-TTCTAG-ACTGTTGC--TTGAGGTTCCTGTCCTGAGC-GCCTTTT  45

seq1  CCATTTTGATATATTCTCATTTTCTCAATTAAAGAGGACAGTGACCTGAC  100
      |||  ||||||  |||||||||||||||||||||||||||||||||||||
seq2  CCA--TTGATAATTTCTCATTTTCTCAATTAAAGAGGACAGTGACCTGAC  93

seq1  ATTAATGAATCAGAGTGATGACTGAACTGTCCCCTTAGA-GCTAGATGAG  149
      |||||||||| ||||||||||||||||| |||||||||| |||| |||||
seq2  ATTAATGAATAAGAGTGATGACTGAACTTTCCCCTTAGAGGCTAAATGAG  143

seq1  AGTATTGGGTATGGCATTGGTTATCCCTCCATTCGGTTTATCTAAAGCAT  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTATTGGGTATGGCATTGGTTAT-CCTCCATTCGGTTTATCTAAAGCAT  192

seq1  TGTCTGATTCCATTTGAATAACATCCAGTTGTATTTGGAGACAGAAGTCC  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTCTGATTCCATTTGAATAACATCCAGTTGTA-TTGGAGACAGAAGTCC  241

seq1  TTGATTGGTTCCCAGCTAGAGATGAGAGTGATAAGTAAAAGAGAAAGCTA  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTTTCCCAGCTAGAGATGAGAGTGATAAGTAAAAGAGAAAGCTA  291

seq1  TTAACATTCCAAGTTCTAGGGAAGGAACCAGAAGAAGTCAAAATGGGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTCCAAGTTCTAGGGAAGGAACCAGAAGAAGTCAAAATGGGCTA  341

seq1  TGTTTAAAATGCTCAAATCAAGGGCTAGAGGAATGACTCATAAGAATACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAATGCTCAAATCAAGGGCTAGAGGAATGACTCATAAGAATACT  391

seq1  GACTGCTTTTTCCATAGGAGCTGGGGTCTCAGCACACAACATGGGAGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTTTTTCCATAGGAGCTGGGGTCTCAGCACACAACATGGGAGCTG  441

seq1  ACCACCAGTTCCAGAGCTCTGACACCTTCTTCTGGCCTTACCTCTTATTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGTTCCAGAGCTCTGACACCTTCTTCTGGCCTTACCTCTTATTG  491

seq1  CCTCACTGAATACCAGACATACATGTCAGCACATACCCATACATATAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGAATACCAGACATACATGTCAGCACATACCCATACATATAAAA  541

seq1  TGATTAAAACATATTTAGGACAAATGTCCAAAAAAGAGTTCATTTGCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAAACATATTTAGGACAAATGTCCAAAAAAGAGTTCATTTGCATT  591

seq1  TCTTGATGCACTCAGAAGAGCATCAGTTCATTTGTTCCTCCTTTGCTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGCACTCAGAAGAGCATCAGTTCATTTGTTCCTCCTTTGCTTTA  641

seq1  CTTTGCCTCAAAGGATCTTCTCTCGGCATTTTGAGCTTTGATGTGACTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTCAAAGGATCTTCTCTCGGCATTTTGAGCTTTGATGTGACTAG  691

seq1  AATGAGGATGTAAAGTCCCTAAGAGGTGGCTTCTACAGCAGGAGAGAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGATGTAAAGTCCCTAAGAGGTGGCTTCTACAGCAGGAGAGAGGA  741

seq1  GAGCTTTGGCTTTCATTTGCTGTCTTGGCTTAAAACAGTAGTTGGCCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGGCTTTCATTTGCTGTCTTGGCTTAAAACAGTAGTTGGCCTAT  791

seq1  TTGTCTTGGCTGTAGATAGGGTTGTGCAGGGTTGAAAAGAGTCAAGTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGGCTGTAGATAGGGTTGTGCAGGGTTGAAAAGAGTCAAGTTCT  841

seq1  TGATGCCCAGGTATATCTAAGCAAAATTTTTCTTATCAAGGAAAAAATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCAGGTATATCTAAGCAAAATTTTTCTTATCAAGGAAAAAATAA  891

seq1  TTAGCAAATATAGTTGTATGAATAACATCTCATATAGAGTTAAGTTTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAATATAGTTGTATGAATAACATCTCATATAGAGTTAAGTTTAAT  941

seq1  GTTTGAAGAGTGAAGAGTGTGATCCTGAACTGTCAAACAACAACAAAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGAGTGAAGAGTGTGATCCTGAACTGTCAAACAACAACAAAAAT  991

seq1  GAAACCCATACCTATCATTAGTCTTTGGTTATCCTTTCCTTTTGCATATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCATACCTATCATTAGTCTTTGGTTATCCTTTCCTTTTGCATATT  1041

seq1  TAATATTCTATGTGGGTGAACACAATAAATTAGTATTACTTAGATCTATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCTATGTGGGTGAACACAATAAATTAGTATTACTTAGATCTATA  1091

seq1  TTATCAAACTATGAGACTTTCTATGTTCTTGCTCATATCCCATAGGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAACTATGAGACTTTCTATGTTCTTGCTCATATCCCATAGGAATT  1141

seq1  C  1150
      |
seq2  C  1142