BAC Information

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BAC

Clone NameB6Ng01-077I18
Chromosome18 (Build37)
Map Location 42,130,595 - 42,324,427
singlet/doubletdoublet
Overlap geneGm851, Sh3rf2
Upstream geneLOC677182, LOC100041988, LOC100041997, Prelid2
Downstream geneEG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077I18.bB6Ng01-077I18.g
ACCDH893491DH893492
length1,177970
definitionDH893491|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I18, 5' end.DH893492|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,323,245 - 42,324,427)(42,130,595 - 42,131,567)
sequence
gaattctgatgcctgagccatgtcctttgtttttagacatggagactaga
gtcaggtagaggtgagggcaaagaaaagggaaacaactttagtattgcca
tggtaactcaagagcatctctagagttcatctttcctgcaaaggcctctt
ggtcaggaaagagaatcatctcctttcccactgttctttcaagatataat
tactgaggtcaggtggtggtggtgcatgcctttaatcctggccactcagc
agtgagagtcaggcagatctctgtgagttcaaggccagcctggtctgtac
agagagttctgggacatcctgggctacagagggagaccctgtctcaaaga
aaagaaaaatagaaatcactattgtatgctcaaaggtgcttgctgaatgg
aggatggttaatggagctggggagcctcctggcactgtaagctactctcg
ttctcttttctatgttccatgtctggttctgtcctagccttcacatttca
attaagatgtcactttcttggggacgtccctggcaatgccacttgcgcct
ctcagccatcctctgtcccacctctctgcttccttcttgacctctgtcct
gttaactcccgtccagctccgataggctttgatggtattcctggcacagt
taactaacgagcgcatgcgctttctgagctatacagtgtgccagagacat
ttgattgctgttacttggcaccaaagaggaggagttgctattaaaatcat
cagccagctggaagcttgtcctgtcagacccatttgcaaatcagaatgga
catttcataagcttttgccaaccctgttaaagctgcaagtccctagggca
gaaaacaccagtgaaactattagtcatagatgctacagtatagctacatt
caaggctacaggcagctgccctaaacattaacgctccatcagatgagtgg
tgatgggacagagatacctgggaaagactggcgagggcgatggtgtaaac
tcatctcaggataactgtcctatttattacagaaaagctctatgtatttc
cacttatctgagaggtaaaacaaggttgcctgctgcttcctaaccgtgac
ctagatgaacgaaatgttattcccttcattgtttgatcccgtgaaaaggg
agttgcacttactcatggatgggttct
gaattcaaggagagaatacacacaccaccaccaccaacaacaacaacaac
aataaatgttttctttttgaagaagctattttttttctatgtgtgcatgt
ttttgcagtgctggatatcaaaacctaagaggacatgcacactagacagg
cactctgtgattgagctctgcccccaagtcaccacttatttttcaaggga
ggtaggatatgataaacattgaagaataagatgagtagaagaagcaggag
aatagaaaagacacagtgaccaaccacgaggagccccagagcaaactaag
agtgaattgcattgatttacagtagtagcttcagctacccactatctttt
tctctcaaaggactgattggtgggattggttggaatggcaataatgttat
tagccagtaaagttcctgcccacaagaataatgacagcctgcaaacgtgg
aaatgatgtctgttcccaagcccaggtgtggtccaaaagcttctgcatct
accgtccacctgcaacagtctgaggagatgtgtgtttatctttagattgg
tttccctggcaaccgatttccagatgaggaattgcatacgtggatattaa
gagatgctttgggaagatacacctggaggaagttaagaacccaggacggg
gcggaggagggtcaacctgctcccagattttggttccattggagaccaca
tcaattattcaggaagctctattgacaggacaactagataaacaagtccc
ctgcagaaaaggcaagtctgagcaagccttggggagggaggtgagagtgc
agtccacagagagcacatggtagcagagcgctgtcatgtcatactgtgac
actcacgggactgggaagggaaagactcaagtgtgagagagtggttactc
agagtattggagtcagactctccacattctgcatcatagaatcttccttg
tgcagagttagtacaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42323245_42324427
seq2: B6Ng01-077I18.b_46_1222 (reverse)

seq1  AGAACCATCCCATGAGTTAAGTACCACACTCCCTCTTCAC-AGATCAAAC  49
      ||||||   ||||||| ||||| |   ||||||| |||||  ||||||||
seq2  AGAACCCATCCATGAG-TAAGTGC--AACTCCCTTTTCACGGGATCAAAC  47

seq1  AACTGAAGGGAATAAACCATTCGTTCATCTAAGGTCACAGTTAGGAAGCA  99
      || |||||||||| |||  ||||||||||| ||||||| |||||||||||
seq2  AA-TGAAGGGAAT-AACATTTCGTTCATCT-AGGTCACGGTTAGGAAGCA  94

seq1  GCAGGCAACCTTGTTTTACCTCTCAGATAAGCTGGTGAATACAT-GAGGC  148
      ||||||||||||||||||||||||||||||| |||  ||||||| |||  
seq2  GCAGGCAACCTTGTTTTACCTCTCAGATAAG-TGG-AAATACATAGAGCT  142

seq1  TCTCTGTAATAAATAGGACAGTTATCCTGAGATGAGTTTTACACCATCGC  198
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTCTGTAATAAATAGGACAGTTATCCTGAGATGAG-TTTACACCATCGC  191

seq1  CCTCGCCAGTCTTTCCCAGTTATCTCTGTCCCATCACCACCTCATCTGAT  248
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  CCTCGCCAGTCTTTCCCAGGTATCTCTGTCCCATCACCA-CTCATCTGAT  240

seq1  GGAGCGTTAATGTTTAGGGCAGCTGCCTGTAGCCCTGAATGTAGCTATAC  298
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGAGCGTTAATGTTTAGGGCAGCTGCCTGTAGCCTTGAATGTAGCTATAC  290

seq1  TGTAGCATCTATGACTAATAGTTTCACTGGTGTTTTCTGCCCTAGGGACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATCTATGACTAATAGTTTCACTGGTGTTTTCTGCCCTAGGGACT  340

seq1  TGCAGCTTT-ACAGGGTTGGC-AAAGCTTATGAAATGTCCATTCTGATTT  396
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  TGCAGCTTTAACAGGGTTGGCAAAAGCTTATGAAATGTCCATTCTGATTT  390

seq1  GCAAATGGGTCTGACAGGACAAGCTTCCAGCTGGCTGATGATTTTAATAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGGGTCTGACAGGACAAGCTTCCAGCTGGCTGATGATTTTAATAG  440

seq1  CAACTCCTCCTCTTTGGTGCCAAGTAACAGCAATCAAATGTCTCTGGCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTCCTCTTTGGTGCCAAGTAACAGCAATCAAATGTCTCTGGCAC  490

seq1  ACTGTATAGCTCAGAAAGCGCATGCGCTCGTTAGTTAACTGTGCCAGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATAGCTCAGAAAGCGCATGCGCTCGTTAGTTAACTGTGCCAGGAA  540

seq1  TACCATCAAAGCCTATCGGAGCTGGACGGGAGTTAACAGGACAGAGGTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCAAAGCCTATCGGAGCTGGACGGGAGTTAACAGGACAGAGGTCA  590

seq1  AGAAGGAAGCAGAGAGGTGGGACAGAGGATGGCTGAGAGGCGCAAGTGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAGCAGAGAGGTGGGACAGAGGATGGCTGAGAGGCGCAAGTGGC  640

seq1  ATTGCCAGGGACGTCCCCAAGAAAGTGACATCTTAATTGAAATGTGAAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGGGACGTCCCCAAGAAAGTGACATCTTAATTGAAATGTGAAGG  690

seq1  CTAGGACAGAACCAGACATGGAACATAGAAAAGAGAACGAGAGTAGCTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACAGAACCAGACATGGAACATAGAAAAGAGAACGAGAGTAGCTTA  740

seq1  CAGTGCCAGGAGGCTCCCCAGCTCCATTAACCATCCTCCATTCAGCAAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCAGGAGGCTCCCCAGCTCCATTAACCATCCTCCATTCAGCAAGC  790

seq1  ACCTTTGAGCATACAATAGTGATTTCTATTTTTCTTTTCTTTGAGACAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGAGCATACAATAGTGATTTCTATTTTTCTTTTCTTTGAGACAGG  840

seq1  GTCTCCCTCTGTAGCCCAGGATGTCCCAGAACTCTCTGTACAGACCAGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTCTGTAGCCCAGGATGTCCCAGAACTCTCTGTACAGACCAGGC  890

seq1  TGGCCTTGAACTCACAGAGATCTGCCTGACTCTCACTGCTGAGTGGCCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGAACTCACAGAGATCTGCCTGACTCTCACTGCTGAGTGGCCAG  940

seq1  GATTAAAGGCATGCACCACCACCACCTGACCTCAGTAATTATATCTTGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCATGCACCACCACCACCTGACCTCAGTAATTATATCTTGAA  990

seq1  AGAACAGTGGGAAAGGAGATGATTCTCTTTCCTGACCAAGAGGCCTTTGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGTGGGAAAGGAGATGATTCTCTTTCCTGACCAAGAGGCCTTTGC  1040

seq1  AGGAAAGATGAACTCTAGAGATGCTCTTGAGTTACCATGGCAATACTAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATGAACTCTAGAGATGCTCTTGAGTTACCATGGCAATACTAAA  1090

seq1  GTTGTTTCCCTTTTCTTTGCCCTCACCTCTACCTGACTCTAGTCTCCATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTCCCTTTTCTTTGCCCTCACCTCTACCTGACTCTAGTCTCCATG  1140

seq1  TCTAAAAACAAAGGACATGGCTCAGGCATCAGAATTC  1183
      |||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAACAAAGGACATGGCTCAGGCATCAGAATTC  1177

seq1: chr18_42130595_42131567
seq2: B6Ng01-077I18.g_68_1037

seq1  GAATTCAAGGAGAGAATACACACACCACCACCACCAACAACAACAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAGAGAATACACACACCACCACCACCAACAACAACAACAAC  50

seq1  AATAAATGTTTTCTTTTTGAAGAAGCTATTTTTTTTCTATGTGTGCATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGTTTTCTTTTTGAAGAAGCTATTTTTTTTCTATGTGTGCATGT  100

seq1  TTTTGCAGTGCTGGATATCAAAACCTAAGAGGACATGCACACTAGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGTGCTGGATATCAAAACCTAAGAGGACATGCACACTAGACAGG  150

seq1  CACTCTGTGATTGAGCTCTGCCCCCAAGTCACCACTTATTTTTCAAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTGATTGAGCTCTGCCCCCAAGTCACCACTTATTTTTCAAGGGA  200

seq1  GGTAGGATATGATAAACATTGAAGAATAAGATGAGTAGAAGAAGCAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGATATGATAAACATTGAAGAATAAGATGAGTAGAAGAAGCAGGAG  250

seq1  AATAGAAAAGACACAGTGACCAACCACGAGGAGCCCCAGAGCAAACTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAGACACAGTGACCAACCACGAGGAGCCCCAGAGCAAACTAAG  300

seq1  AGTGAATTGCATTGATTTACAGTAGTAGCTTCAGCTACCCACTATCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATTGCATTGATTTACAGTAGTAGCTTCAGCTACCCACTATCTTTT  350

seq1  TCTCTCAAAGGACTGATTGGTGGGATTGGTTGGAATGGCAATAATGTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAAGGACTGATTGGTGGGATTGGTTGGAATGGCAATAATGTTAT  400

seq1  TAGCCAGTAAAGTTCCTGCCCACAAGAATAATGACAGCCTGCAAACGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTAAAGTTCCTGCCCACAAGAATAATGACAGCCTGCAAACGTGG  450

seq1  AAATGATGTCTGTTCCCAAGCCCAGGTGTGGTCCAAAAGCTTCTGCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGTCTGTTCCCAAGCCCAGGTGTGGTCCAAAAGCTTCTGCATCT  500

seq1  ACCGTCCACCTGCAACAGTCTGAGGAGATGTGTGTTTATCTTTAGATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCCACCTGCAACAGTCTGAGGAGATGTGTGTTTATCTTTAGATTGG  550

seq1  TTTCCCTGGCAACCGATTTCCAGATGAGGAATTGCATACGTGGATATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGGCAACCGATTTCCAGATGAGGAATTGCATACGTGGATATTAA  600

seq1  GAGATGCTTTGGGAAGATACACCTGGAGGAAGTTAAGAACCCAGGACGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTTTGGGAAGATACACCTGGAGGAAGTTAAGAACCCAGGACGGG  650

seq1  GCGGAGGAGGGTCAACCTGCTCCCAGA-TTTGGTTCCATTGGAGACCACA  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCGGAGGAGGGTCAACCTGCTCCCAGATTTTGGTTCCATTGGAGACCACA  700

seq1  TCAATTATTCAGGAAGCTCTATTGACAGGACAACTAGATAAACAAGTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTATTCAGGAAGCTCTATTGACAGGACAACTAGATAAACAAGTCCC  750

seq1  CTGCAGAAAAGGCAAGTCTGAGCAAGCCTTGGGGAGGGAGGTGAGAGTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAAAAGGCAAGTCTGAGCAAGCCTTGGGGAGGGAGGTGAGAGTGC  800

seq1  AGTCCACAGAGAGCACATGGTAGCAGAGCGCTGTCATGTCATTACTGTGA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTCCACAGAGAGCACATGGTAGCAGAGCGCTGTCATGTCA-TACTGTGA  849

seq1  CAACTCAC-GGACTGGG-ATGGAAAGACTCAAGTGTGGAGAGAGTGGTAA  897
      | |||||| |||||||| | |||||||||||||||| ||||||||||| |
seq2  C-ACTCACGGGACTGGGAAGGGAAAGACTCAAGTGT-GAGAGAGTGGTTA  897

seq1  CCCAGAGCAATTGGAGTCTAGACTCCCCACATTCTGCAGTCATAGAATCT  947
      | |||||  ||||||||| |||||| |||||||||||| |||||||||||
seq2  CTCAGAG-TATTGGAGTC-AGACTCTCCACATTCTGCA-TCATAGAATCT  944

seq1  TCCATGTGCAGAGTAAGTACAAGGAA  973
      ||| |||||||||| |||||||||||
seq2  TCCTTGTGCAGAGTTAGTACAAGGAA  970