BAC Information

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BAC

Clone NameB6Ng01-077K02
Chromosome18 (Build37)
Map Location 44,026,056 - 44,115,543
singlet/doubletdoublet
Overlap genenone
Upstream genePpp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94
Downstream geneSpink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077K02.bB6Ng01-077K02.g
ACCDH893553DH893554
length807975
definitionDH893553|Mus musculus domesticus DNA, BAC clone: B6Ng01-077K02, 5' end.DH893554|Mus musculus domesticus DNA, BAC clone: B6Ng01-077K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,026,056 - 44,026,701)(44,115,016 - 44,115,543)
sequence
gaattccccaagctctgcctaatgtctggctgtgggtctctgtatctatt
tcaaattgatggtgtgtgaagcctctctgttgatagttatgctaggtgcc
tacctgcaagtatagtaaaatatcactaacagtgtcagtggtgagcacca
tcccatggcatgggcctcaggttatacatgtcattagttattcattccct
caattttgactccatctttacccctacacatcttgtaggcaggacaaata
gtaggtcaacatttttttggctgggttgatgtcccaatctctccattgga
agtcttgcctggttgtaggagatagtcagttgagtctttatatccctcat
tgaagaagtcttagctagggtcacattcataggttcctgagacttttcat
cttcattgccttagatttctagctcaattcagagattcccccacgttcta
gttctctcccactactctctttctctctctgacctgttccgacctgatcc
tgtttttatccgcactctctcccccagcccaggactcttctctgtccacc
tataatgtctattccatttccacttctatgtgagtttgatcagtggaatc
aaactcaagacccactagtaaatccacacactttatttttgacaaataag
ctgaaactacaacaacaacaacacctttgttcaagaaaaatgttataaac
aaatgccttggtttttctttcatgctattttggttgctttccccatgtca
gttcaggatcatatttttgatgtctttcctgtttggtggtggtggtgggt
ggtggtg
gaattcactatgaaattcacttatagagatttaggcttcaaaattaagaa
tgaggggctggaattagggattagtgcctgtttaaaataaactacttggt
agttgcaggttctccttcaagatccatggcctcactagtcctggggcatg
atgtctttcctgttgaatgtgtttcaaggccaattacagagctgttggat
acaatcaaggtagaagtcccactatggcagcattatggttgtcttgacat
gctggtagtaattgctgtagttcataggcatcatacctgtggaggacttt
tggttgtttcccttctttggaagcttctggtaccatgaaagctaattctc
atggagaagacactcagatcagttccgacgtagatgtctacagaccctgt
ttcagaagtgcatggcatcttcaaggatagaaacctaatttacaaccctt
ggggcaaccaaaagtgatatcaatagactttaatgttttgagcatctttt
ggacaacctggaccaacaacataaaagagggcatgctgtggcttttgcta
gatttttttttgctttggattttgtaggaagcattgtcaactcaaatggg
aaattttcatttgaattacatatgtatatttaaatacagacttgcgagta
ttatgtgtattttaggtaaatagtagtattatttcttatgactttttcag
acatctttactaagatctacaactcagcatttttaaaacttttttattga
ttctttttgagtttcacatcatgtggggagtcctactcatctccccatcc
cctcatatctgccatttgcccttgcaacttccttccaaaatgaaacacac
acaaaaaaaccccaacaacaacccaaacaaaaacaaaacatagaaaacat
ctcattgtggatgcttgtagtgtttcatagtgtgtcctagagtacaccca
tctgtccatgcatcgccactgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44026056_44026701
seq2: B6Ng01-077K02.b_210_854

seq1  GGCCTCAGGTTATACATGTCATTAGTTATTCATTCCCTCAATTTTGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGGTTATACATGTCATTAGTTATTCATTCCCTCAATTTTGACTC  50

seq1  CATCTTTACCCCTACACATCTTGTAGGCAGGACAAATAGTAGGTCAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTACCCCTACACATCTTGTAGGCAGGACAAATAGTAGGTCAACAT  100

seq1  TTTTTTGGCTGGGTTGATGTCCCAATCTCTCCATTGGAAGTCTTGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGCTGGGTTGATGTCCCAATCTCTCCATTGGAAGTCTTGCCTGG  150

seq1  TTGTAGGAGATAGTCAGTTGAGTCTTTATATCCCTCATTGAAGAAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGAGATAGTCAGTTGAGTCTTTATATCCCTCATTGAAGAAGTCTT  200

seq1  AGCTAGGGTCACATTCATAGGTTCCTGAGACTTTTCATCTTCATTGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGGTCACATTCATAGGTTCCTGAGACTTTTCATCTTCATTGCCTT  250

seq1  AGATTTCTAGCTCAATTCAGAGATTCCCCCACGTTCTAGTTCTCTCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTAGCTCAATTCAGAGATTCCCCCACGTTCTAGTTCTCTCCCAC  300

seq1  TACTCTCTTTCTCTCTCTGACCTGTTCCGACCTGATCCTGTTTTTATCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCTTTCTCTCTCTGACCTGTTCCGACCTGATCCTGTTTTTATCCG  350

seq1  CACTCTCTCCCCCAGCCCAGGACTCTTCTCTGTCCACCTATAATGTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCCCCCAGCCCAGGACTCTTCTCTGTCCACCTATAATGTCTAT  400

seq1  TCCATTTCCACTTCTATGTGAGTTTGATCAGTGGAATCAAACTCAAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCCACTTCTATGTGAGTTTGATCAGTGGAATCAAACTCAAGACC  450

seq1  CACTAGTAAATCCACACACTTTATTTTTGACAAATAAGCTGAAACTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTAAATCCACACACTTTATTTTTGACAAATAAGCTGAAACTACAA  500

seq1  CAACAACAACACCTTTGTTCAAGAAAAATGTTATAAACAAATGCCTTGG-  549
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAACAACAACACCTTTGTTCAAGAAAAATGTTATAAACAAATGCCTTGGT  550

seq1  TTTTCTTTCATGCTATTTTGGTTGCTTTCCCCATGTCAGTTCAGGATCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCATGCTATTTTGGTTGCTTTCCCCATGTCAGTTCAGGATCAT  600

seq1  ATTTTTGATGTCTTTCCTGTTTGGTGGTGGTGGTGGTGGTGGTGGTG  646
      |||||||||||||||||||||||||||||||||||  ||||||||||
seq2  ATTTTTGATGTCTTTCCTGTTTGGTGGTGGTGGTG--GGTGGTGGTG  645

seq1: chr18_44115016_44115543
seq2: B6Ng01-077K02.g_67_594 (reverse)

seq1  TCTTTTATGTTGTTGGTCCAGGTTGTCCAAAAGATGCTCAAAACATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATGTTGTTGGTCCAGGTTGTCCAAAAGATGCTCAAAACATTAAA  50

seq1  GTCTATTGATATCACTTTTGGTTGCCCCAAGGGTTGTAAATTAGGTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTGATATCACTTTTGGTTGCCCCAAGGGTTGTAAATTAGGTTTCT  100

seq1  ATCCTTGAAGATGCCATGCACTTCTGAAACAGGGTCTGTAGACATCTACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGAAGATGCCATGCACTTCTGAAACAGGGTCTGTAGACATCTACG  150

seq1  TCGGAACTGATCTGAGTGTCTTCTCCATGAGAATTAGCTTTCATGGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAACTGATCTGAGTGTCTTCTCCATGAGAATTAGCTTTCATGGTACC  200

seq1  AGAAGCTTCCAAAGAAGGGAAACAACCAAAAGTCCTCCACAGGTATGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTCCAAAGAAGGGAAACAACCAAAAGTCCTCCACAGGTATGATG  250

seq1  CCTATGAACTACAGCAATTACTACCAGCATGTCAAGACAACCATAATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAACTACAGCAATTACTACCAGCATGTCAAGACAACCATAATGCT  300

seq1  GCCATAGTGGGACTTCTACCTTGATTGTATCCAACAGCTCTGTAATTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGTGGGACTTCTACCTTGATTGTATCCAACAGCTCTGTAATTGGC  350

seq1  CTTGAAACACATTCAACAGGAAAGACATCATGCCCCAGGACTAGTGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAACACATTCAACAGGAAAGACATCATGCCCCAGGACTAGTGAGGC  400

seq1  CATGGATCTTGAAGGAGAACCTGCAACTACCAAGTAGTTTATTTTAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATCTTGAAGGAGAACCTGCAACTACCAAGTAGTTTATTTTAAACA  450

seq1  GGCACTAATCCCTAATTCCAGCCCCTCATTCTTAATTTTGAAGCCTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAATCCCTAATTCCAGCCCCTCATTCTTAATTTTGAAGCCTAAAT  500

seq1  CTCTATAAGTGAATTTCATAGTGAATTC  528
      ||||||||||||||||||||||||||||
seq2  CTCTATAAGTGAATTTCATAGTGAATTC  528