BAC Information

Click to search

BAC

Clone NameB6Ng01-078J10
Chromosome18 (Build37)
Map Location 37,114,971 - 37,246,463
singlet/doubletdoublet
Overlap genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12
Upstream genePsd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427
Downstream genePcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078J10.bB6Ng01-078J10.g
ACCDH894243DH894244
length1,192998
definitionDH894243|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J10, 5' end.DH894244|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,114,971 - 37,116,082)(37,245,462 - 37,246,463)
sequence
gaattcttgcatggtgatagttttcctttgggagtttgactatatcttct
agcatgcaaaatttctgccgagaaatctgctgataagctttacggtgttc
cagctgctgtcaaaattctgtcttcactgttgatgcttaacaattagttt
ctagatgtggcattgcttagtttcctcctctctgaactatgctaaggttc
ttggctttgactatccatttcacccgcagatttagagggtttaagccata
attccgaagttaagaattttgctgttctcttctctctgtgattaacacaa
tacaaatattagctcacttaaaaaaaaaccaacaaccattaagtctctta
gtccttcttcatcctttaacattctcttttagctttgactctcttcataa
gcaaatattccatccttgaggccactgttccttttgcttggtcatatatt
tataattgttctcctgaaattttcagtgttcttcaattccaaaatttctc
tgcagttggttaaaactccatctctgttgaagttccctttctgttaatac
tttattttcatgagctcattgggcattttgtgttggctagtttaaagact
gccagaattcattcgcctctcctctttacatttggcttctgtagatcaca
gaaattcttttgtgttctcttacttttctccccttttgttatttggtgtc
aatgttcccttatttgtagaaaaaaatcagccacttctcccaatccttct
agcaggttctcattgtcagttgtctgagaatctgggctccttccaagcca
tttgggcagatgtgtgctctctatagttttatgcacaaacgcctagcagg
gccatctactgatttctcttttttaaggggctgataaatgactcccctag
gtgtctttttcactgtacagatgccctggagtaaagtctctactcacctc
tttcctcttttcacacagtctatgactggcccaaaactcattaagcagcc
aggctgatcctggaactcagagaccgttcacctcttgctcttcaagtgat
gggattaattgtataatcacaccctggatgatgcctctttgttgttgttc
tgaatagtttcaggcattagatctgcagtttctatcacgtgagataaggt
aaaacagaaaaagagtttcttgatcctgtccaatggaacagt
gaattccataaacagtgagaggtcgctttctcattgctaccctttactac
ccttctctggtctccgatggccttccctagccaagcaagtcttccctggt
ctttgccggtcacttctgctgactcgagcagattctacataaccttgtgg
tttctggtggatcgagctgctgctactgatcatggtgcttgctattggac
tgggttgctggtatcctgacaatgaagagtggaatcactccaaagaacta
cttctaaataggtccacaaccctcttttcctataaactttcttcttttcc
tgcctatggttggtgggctacaagggaggttgaagcattcttagaaacct
ataaagcaggtttaaggaaaaacttaagtccacactagatcatatccaag
ttttttatcctctgaagccattaaaattaagttgtgtgaagagaatgtga
tacatttgataggagattaacaaatataaataactcaactcaatagtaat
tttaaaagctaattaaaagtggttaaaggagacccaattcattcattaaa
cattcacctagcatctcaaaggcccagagtatgatccctccagaactgtc
aaaaaaaggaacaggcttatcaggtacttaaatagacactttctcaagag
aagacatatgaagatctagctgaatatgaaaagtgctcaaaatcaattat
caccaaataaataaaaatttaaaaataacactgtatatcatcttgcacta
gctagatttatttctttcagaaggtgaagtatttatatggaggcaaataa
ataaaaattgtttttgttaccactattggtagaaatgaaaatttatgcag
tataagaaaaacattctgaaagatcctcaagtgtttgttttttgtttaca
ctccagactttactccctggcccggaccattctctaactggtcctggtat
ctgtccacctctttgaatctcgtcattgctaccggcccatggttcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37114971_37116082
seq2: B6Ng01-078J10.b_127_1235

seq1  TAAGCTTTACGGTGTTCCAGCTGCTGTCAAAATTCTGTCTTCACTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTACGGTGTTCCAGCTGCTGTCAAAATTCTGTCTTCACTGTTGA  50

seq1  TGCTTAACAATTAGTTTCTAGATGTGGCATTGCTTAGTTTCCTCCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAACAATTAGTTTCTAGATGTGGCATTGCTTAGTTTCCTCCTCTCT  100

seq1  GAACTATGCTAAGGTTCTTGGCTTTGACTATCCATTTCACCCGCAGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATGCTAAGGTTCTTGGCTTTGACTATCCATTTCACCCGCAGATTT  150

seq1  AGAGGGTTTAAGCCATAATTCCGAAGTTAAGAATTTTGCTGTTCTCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTTAAGCCATAATTCCGAAGTTAAGAATTTTGCTGTTCTCTTCT  200

seq1  CTCTGTGATTAACACAATACAAATATTAGCTCACTTAAAAAAAAACCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGATTAACACAATACAAATATTAGCTCACTTAAAAAAAAACCAAC  250

seq1  AACCATTAAGTCTCTTAGTCCTTCTTCATCCTTTAACATTCTCTTTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTAAGTCTCTTAGTCCTTCTTCATCCTTTAACATTCTCTTTTAGC  300

seq1  TTTGACTCTCTTCATAAGCAAATATTCCATCCTTGAGGCCACTGTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCTCTTCATAAGCAAATATTCCATCCTTGAGGCCACTGTTCCTT  350

seq1  TTGCTTGGTCATATATTTATAATTGTTCTCCTGAAATTTTCAGTGTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGGTCATATATTTATAATTGTTCTCCTGAAATTTTCAGTGTTCTT  400

seq1  CAATTCCAAAATTTCTCTGCAGTTGGTTAAAACTCCATCTCTGTTGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCAAAATTTCTCTGCAGTTGGTTAAAACTCCATCTCTGTTGAAGT  450

seq1  TCCCTTTCTGTTAATACTTTATTTTCATGAGCTCATTGGGCATTTTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTGTTAATACTTTATTTTCATGAGCTCATTGGGCATTTTGTGT  500

seq1  TGGCTAGTTTAAAGACTGCCAGAATTCATTCGCCTCTCCTCTTTACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGTTTAAAGACTGCCAGAATTCATTCGCCTCTCCTCTTTACATTT  550

seq1  GGCTTCTGTAGATCACAGAAATTCTTTTGTGTTCTCTTACTTTTCTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGTAGATCACAGAAATTCTTTTGTGTTCTCTTACTTTTCTCCCC  600

seq1  TTTTGTTATTTGGTGTCAATGTTCCCTTATTTGTAGAAAAAAATCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTATTTGGTGTCAATGTTCCCTTATTTGTAGAAAAAAATCAGCCA  650

seq1  CTTCTCCCAATCCTTCTAGCAGGTTCTCATTGTCAGTTGTCTGAGAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCAATCCTTCTAGCAGGTTCTCATTGTCAGTTGTCTGAGAATCT  700

seq1  GGGCTCC-TCCAAGCCATTTGGGCAGATGTGTGCTCTCTATAGTTTTATG  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCTTCCAAGCCATTTGGGCAGATGTGTGCTCTCTATAGTTTTATG  750

seq1  CACAAACGCCTAGCAGGGCCATCTACTGATTTCTC-TTTTTCAGGGGCTG  798
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  CACAAACGCCTAGCAGGGCCATCTACTGATTTCTCTTTTTTAAGGGGCTG  800

seq1  ATAAATGACTCCCCTAGGTGTC-TTTTCACTGTACAGATGCCCTGGAGTA  847
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAAATGACTCCCCTAGGTGTCTTTTTCACTGTACAGATGCCCTGGAGTA  850

seq1  AAGTCTCTACTCACCTCTTTCCTCTTTTCCACACAGTCTATGACTGGCCC  897
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGTCTCTACTCACCTCTTTCCTCTTTT-CACACAGTCTATGACTGGCCC  899

seq1  AAAACTCATTAAGCAGGCCAGGCTGAT-CTGGAACTCAGAGACCGTTCAA  946
      ||||||||||||||| ||||||||||| |||||||||||||||||||| |
seq2  AAAACTCATTAAGCA-GCCAGGCTGATCCTGGAACTCAGAGACCGTTC-A  947

seq1  CCTCTGCCTC-TCAAGTGATGGGATTAA-TGTATTAATCCACA-CCTGGA  993
      |||||  ||| ||||||||||||||||| |||| |||| |||| ||||||
seq2  CCTCTTGCTCTTCAAGTGATGGGATTAATTGTA-TAAT-CACACCCTGGA  995

seq1  TGATGCCTCTTTGTTGTTGTTCTGAATAGTTTTCAGGCATTAGAATCTGC  1043
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TGATGCCTCTTTGTTGTTGTTCTGAATAG-TTTCAGGCATTAG-ATCTGC  1043

seq1  AGTTTCCTATCAACGTGAGATACAGGTGAGACAG-AAAAGAGTTTCTTGA  1092
      ||||| ||||| |||||||||| |||| | |||| |||||||||||||||
seq2  AGTTT-CTATC-ACGTGAGATA-AGGTAAAACAGAAAAAGAGTTTCTTGA  1090

seq1  T-CTGCCCAATGGGAAACAGT  1112
      | ||| |||||||  ||||||
seq2  TCCTGTCCAATGG--AACAGT  1109

seq1: chr18_37245462_37246463
seq2: B6Ng01-078J10.g_67_1064 (reverse)

seq1  TGTGAACCATGGGCATGTAGCAATGACAGAGATCATAAGGGGGTGACAGA  50
      ||||||||||||||  ||||||||||| |||||   ||| ||  ||||||
seq2  TGTGAACCATGGGCCGGTAGCAATGAC-GAGATTCAAAGAGGTGGACAGA  49

seq1  TACCCAGGAACAGTTAGAGAATGGACCGGGGCAGGGGAGTAAAGTATGGA  100
      || |||||| |||||||||||||| ||||| || ||||||||||| ||||
seq2  TA-CCAGGACCAGTTAGAGAATGGTCCGGGCCA-GGGAGTAAAGTCTGGA  97

seq1  GTGTAAAACAAAAAACAAAACACTTGAGGATCTTTCAGAATGTTTTTCTT  150
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTGT-AAACAAAAAAC-AAACACTTGAGGATCTTTCAGAATGTTTTTCTT  145

seq1  AATAACTGCATAAATTTTCATTTCTACCAATAGT-GTAACAAAAACAATT  199
      |   |||||||||||||||||||||||||||||| |||||||||||||||
seq2  A--TACTGCATAAATTTTCATTTCTACCAATAGTGGTAACAAAAACAATT  193

seq1  TTTATTTATTTGCCTCCATATAAATACTTCACCTTCTGACAAGAATAATT  249
      ||||||||||||||||||||||||||||||||||||||| |  ||||| |
seq2  TTTATTTATTTGCCTCCATATAAATACTTCACCTTCTGAAAGAAATAAAT  243

seq1  CTAGCTAGTGCAAGATGATATTACAGTGTTATTTT--AAATTTTATTTAT  297
      |||||||||||||||||||| ||||||||||||||  || ||||||||||
seq2  CTAGCTAGTGCAAGATGATA-TACAGTGTTATTTTTAAATTTTTATTTAT  292

seq1  TTGGTGATAATTGATTTTGAGCACTTTTCATATTCTGCTAGATCTTCATA  347
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGGTGATAATTGATTTTGAGCACTTTTCATATTCAGCTAGATCTTCATA  342

seq1  TGTCTTCTCTTGAG-AAGTGTCTATTTAAGTACCTGATAAGCCTGTTCCT  396
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTCTTGAGAAAGTGTCTATTTAAGTACCTGATAAGCCTGTTCCT  392

seq1  TTTTTTGACAGTTCTGGAGGGATCATACTCTGGGCCTTTGAGATGCTAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGACAGTTCTGGAGGGATCATACTCTGGGCCTTTGAGATGCTAGG  442

seq1  TGAATGTTTAATGAATGAATTGGGTCTCCTTTAACCACTTTTAATTAGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTTAATGAATGAATTGGGTCTCCTTTAACCACTTTTAATTAGCT  492

seq1  TTTAAAATTACTATTGAGTTGAGTTATTTATATTTGTTAATCTCCTATCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTACTATTGAGTTGAGTTATTTATATTTGTTAATCTCCTATCA  542

seq1  AATGTATCACATTCTCTTCACACAACTTAATTTTAATGGCTTCAGAGGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCACATTCTCTTCACACAACTTAATTTTAATGGCTTCAGAGGAT  592

seq1  AAAAAACTTGGATATGATCTAGTGTGGACTTAAGTTTTTCCTTAAACCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTGGATATGATCTAGTGTGGACTTAAGTTTTTCCTTAAACCTG  642

seq1  CTTTATAGGTTTCTAAGAATGCTTCAACCTCCCTTGTAGCCCACCAACCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAGGTTTCTAAGAATGCTTCAACCTCCCTTGTAGCCCACCAACCA  692

seq1  TAGGCAGGAAAAGAAGAAAGTTTATAGGAAAAGAGGGTTGTGGACCTATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGGAAAAGAAGAAAGTTTATAGGAAAAGAGGGTTGTGGACCTATT  742

seq1  TAGAAGTAGTTCTTTGGAGTGATTCCACTCTTCATTGTCAGGATACCAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAGTTCTTTGGAGTGATTCCACTCTTCATTGTCAGGATACCAGC  792

seq1  AACCCAGTCCAATAGCAAGCACCATGATCAGTAGCAGCAGCTCGATCCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTCCAATAGCAAGCACCATGATCAGTAGCAGCAGCTCGATCCAC  842

seq1  CAGAAACCACAAGGTTATGTAGAATCTGCTCGAGTCAGCAGAAGTGACCG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCACAAGGTTATGTAGAATCTGCTCGAGTCAGCAGAAGTGACCG  892

seq1  GCAAAGACCAGGGAAGACTTGCTTGGCTAGGGAAGGCCATCGGAGACCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACCAGGGAAGACTTGCTTGGCTAGGGAAGGCCATCGGAGACCAG  942

seq1  AGAAGGGTAGTAAAGGGTAGCAATGAGAAAGCGACCTCTCACTGTTTATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTAGTAAAGGGTAGCAATGAGAAAGCGACCTCTCACTGTTTATG  992

seq1  GAATTC  1002
      ||||||
seq2  GAATTC  998