BAC Information

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BAC

Clone NameB6Ng01-078K20
Chromosome18 (Build37)
Map Location 49,650,476 - 49,801,456
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078K20.bB6Ng01-078K20.g
ACCDH894310DH894311
length923390
definitionDH894310|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K20, 5' end.DH894311|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,800,534 - 49,801,456)(49,650,476 - 49,650,871)
sequence
gaattcatttgtagtttttgaaagcaggtttgaagccatgctctcttatt
tcttcaaataatatttttatttaccttttgaaaattttatacacgtatag
agcatgctttaatattgcacacatacactctagtttcctccagacatact
aacttgtcttcctcttgacgtcatgtcctccttttaaaaaattaaagtta
attgtctctgagtccaataaagtttttttcccttaagttaaggcaagata
gtcctgtgtagcccaggatgtctttgtactcaatctttctgcttctgcct
cccaagtacattgactttgtgtcaatgctaccacagctgggacagttgtt
ttcatattatgtctagaaataattttaagaataagattatttgaggagaa
aaaggaaaaggagatgggatttttttttacaaaggttttgatagacatga
ttttatctttggttggtactttttcatagatgagagcatacttgatttaa
atattacattgaatgatatcactcaggatcagaataacaaacactagttg
ctccttgttatatgaagagcctagctttccatcatttgcttttttttttc
cgagacagggtttctatgtatagtcctggctatcctggaactcactctgt
agacagggatggcctcagaaattctgcctctgcctcccaaatgctgggat
taaagtcgtgcgccaccacgcccagctatccttcatttgctttttaaact
tgaagtatatgtagaagtcaggtaattagaaatgtgtctttacgatgcat
tcattagggaaggagagatagaaaggtgtaggtaaaatgtaggtagagat
gggcaaatactggggagtggggccagaaaaggctcaaacagggagggatg
gagggcgtggtaatggggggaat
catctaatgtttggctatgggtctctgcatcttccattggctgctaggtg
gagcctctcagagaacagctatgctagactccttctacaaacagggtatc
attaatacggtcagggattggtgcttgcccatgggttgggtctcaagttg
ggtcagtcattggttgcccattccctcagtctctgttccatctttaaggc
ctcagtgtgagaggatgcaccaagtcctacagtaatttgaagtgcaaggg
tagggtgataacccaggggcgagcctctttcttctcagaggagaaggagg
ggccttgtgggggtgggctgggaggaggtgaggtctacgatcagtatgat
agatagatagatagatagatagatagatagatagatagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49800534_49801456
seq2: B6Ng01-078K20.b_49_971 (reverse)

seq1  ATTCCCCCCATTACCACGCCCTCCATCCCTCCCTGTTTGAGCCTTTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCCCATTACCACGCCCTCCATCCCTCCCTGTTTGAGCCTTTTCTG  50

seq1  GCCCCACTCCCCAGTATTTGCCCATCTCTACCTACATTTTACCTACACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACTCCCCAGTATTTGCCCATCTCTACCTACATTTTACCTACACCT  100

seq1  TTCTATCTCTCCTTCCCTAATGAATGCATCGTAAAGACACATTTCTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTCTCCTTCCCTAATGAATGCATCGTAAAGACACATTTCTAATT  150

seq1  ACCTGACTTCTACATATACTTCAAGTTTAAAAAGCAAATGAAGGATAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTTCTACATATACTTCAAGTTTAAAAAGCAAATGAAGGATAGCT  200

seq1  GGGCGTGGTGGCGCACGACTTTAATCCCAGCATTTGGGAGGCAGAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGGTGGCGCACGACTTTAATCCCAGCATTTGGGAGGCAGAGGCAG  250

seq1  AATTTCTGAGGCCATCCCTGTCTACAGAGTGAGTTCCAGGATAGCCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGAGGCCATCCCTGTCTACAGAGTGAGTTCCAGGATAGCCAGGA  300

seq1  CTATACATAGAAACCCTGTCTCGGAAAAAAAAAAGCAAATGATGGAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATAGAAACCCTGTCTCGGAAAAAAAAAAGCAAATGATGGAAAGC  350

seq1  TAGGCTCTTCATATAACAAGGAGCAACTAGTGTTTGTTATTCTGATCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCTTCATATAACAAGGAGCAACTAGTGTTTGTTATTCTGATCCTG  400

seq1  AGTGATATCATTCAATGTAATATTTAAATCAAGTATGCTCTCATCTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATCATTCAATGTAATATTTAAATCAAGTATGCTCTCATCTATGA  450

seq1  AAAAGTACCAACCAAAGATAAAATCATGTCTATCAAAACCTTTGTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACCAACCAAAGATAAAATCATGTCTATCAAAACCTTTGTAAAAA  500

seq1  AAAATCCCATCTCCTTTTCCTTTTTCTCCTCAAATAATCTTATTCTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCCATCTCCTTTTCCTTTTTCTCCTCAAATAATCTTATTCTTAAA  550

seq1  ATTATTTCTAGACATAATATGAAAACAACTGTCCCAGCTGTGGTAGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCTAGACATAATATGAAAACAACTGTCCCAGCTGTGGTAGCATT  600

seq1  GACACAAAGTCAATGTACTTGGGAGGCAGAAGCAGAAAGATTGAGTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAAGTCAATGTACTTGGGAGGCAGAAGCAGAAAGATTGAGTACAA  650

seq1  AGACATCCTGGGCTACACAGGACTATCTTGCCTTAACTTAAGGGAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCCTGGGCTACACAGGACTATCTTGCCTTAACTTAAGGGAAAAAA  700

seq1  ACTTTATTGGACTCAGAGACAATTAACTTTAATTTTTTAAAAGGAGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTGGACTCAGAGACAATTAACTTTAATTTTTTAAAAGGAGGACA  750

seq1  TGACGTCAAGAGGAAGACAAGTTAGTATGTCTGGAGGAAACTAGAGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTCAAGAGGAAGACAAGTTAGTATGTCTGGAGGAAACTAGAGTGTA  800

seq1  TGTGTGCAATATTAAAGCATGCTCTATACGTGTATAAAATTTTCAAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCAATATTAAAGCATGCTCTATACGTGTATAAAATTTTCAAAAGG  850

seq1  TAAATAAAAATATTATTTGAAGAAATAAGAGAGCATGGCTTCAAACCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAATATTATTTGAAGAAATAAGAGAGCATGGCTTCAAACCTGC  900

seq1  TTTCAAAAACTACAAATGAATTC  923
      |||||||||||||||||||||||
seq2  TTTCAAAAACTACAAATGAATTC  923

seq1: chr18_49650476_49650871
seq2: B6Ng01-078K20.g_69_464

seq1  GAATTCCATCTAATGTTTGGCTATGGGTCTCTGCATCTTCCATTGGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTAATGTTTGGCTATGGGTCTCTGCATCTTCCATTGGCTGC  50

seq1  TAGGTGGAGCCTCTCAGAGAACAGCTATGCTAGACTCCTTCTACAAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGAGCCTCTCAGAGAACAGCTATGCTAGACTCCTTCTACAAACAG  100

seq1  GGTATCATTAATACGGTCAGGGATTGGTGCTTGCCCATGGGTTGGGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCATTAATACGGTCAGGGATTGGTGCTTGCCCATGGGTTGGGTCTC  150

seq1  AAGTTGGGTCAGTCATTGGTTGCCCATTCCCTCAGTCTCTGTTCCATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGTCAGTCATTGGTTGCCCATTCCCTCAGTCTCTGTTCCATCTT  200

seq1  TAAGGCCTCAGTGTGAGAGGATGCACCAAGTCCTACAGTAATTTGAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCTCAGTGTGAGAGGATGCACCAAGTCCTACAGTAATTTGAAGTG  250

seq1  CAAGGGTAGGGTGATAACCCAGGGGCGAGCCTCTTTCTTCTCAGAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTAGGGTGATAACCCAGGGGCGAGCCTCTTTCTTCTCAGAGGAGA  300

seq1  AGGAGGGGCCTTGTGGGGGTGGGCTGGGAGGAGGTGAGGTCTACGATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGCCTTGTGGGGGTGGGCTGGGAGGAGGTGAGGTCTACGATCAG  350

seq1  TATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  396