BAC Information

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BAC

Clone NameB6Ng01-078O13
Chromosome18 (Build37)
Map Location 31,981,738 - 32,087,345
singlet/doubletdoublet
Overlap geneWdr33, Sft2d3
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327
Downstream geneLims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078O13.bB6Ng01-078O13.g
ACCDH894482DH894483
length1,00177
definitionDH894482|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O13, 5' end.DH894483|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,981,738 - 31,982,742)(32,087,269 - 32,087,345)
sequence
gaattcagagacctgcctaccactgctggcattaaaagccaccatacttg
atgagaaacatgtttttattgtgtatggtttttcttcactggaatctgcc
caaaagctgagagcttattgtaaacagccatgagatgttttctacttttc
ctctacttcctgatgttgaagtttgaaatgtgtgtttaggtatttttggg
ttatgttctattagggaaaacatcacttttatgtatgttggggggatatg
ttcatgtgtatatatgcacatggtgcgtgtgtatggagactagaggttga
ctttagctttctttcttgcatgctctctgttctctttatgtagccctggg
tgtagaccaggctggttacaaactcagagagctgcctacctctgccttcc
tgagtgctgcaatgaaaggtttgtgccattatgcccagcttttccactta
attttttgagacaaaaactctcactcacgtttctaagctggctggccagt
gagctctaggactgcacctggtctgtgtgtccctcagtgctgcattgctt
ctgtgagtaccttttacatggtttctgaggattcaagcccttttgcttac
aagactttcttctgctcaagacagggtttctctgtgttgccctggctgtt
gtagaactccatctgtggtctcaaactcacttgcctctgcctcccgagtg
ctgagattaaaggtgtgccctcacccctctagcctgcttctggaatttta
tatagtcaggataggtttgttttatggaaatagaagcgactaggtttcat
ggagcttgtaactgctgttctgtgaaagtgaatgttgtgtttagtgagtc
agaatgatgtgactttacttgatgtatgtactgtaagcaactcttgacag
aaatgtgctccttgcttgacattacagatttatatttaaggggaaagatg
aactgaatttagttttgggtaggtttttaccttaaaaagttagatgttta
g
taggcaccatgctagaccagtaaaatgaagatgacgagaactctaagagc
ctcggttgggggggagggtatggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31981738_31982742
seq2: B6Ng01-078O13.b_47_1047

seq1  GAATTCAGAGACCTGCCTACCACTGCTGGCATTAAAAGCCACCATACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACCTGCCTACCACTGCTGGCATTAAAAGCCACCATACTTG  50

seq1  ATGAGAAACATGTTTTTATTGTGTATGGTTTTTCTTCACTGGAATCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAACATGTTTTTATTGTGTATGGTTTTTCTTCACTGGAATCTGCC  100

seq1  CAAAAGCTGAGAGCTTATTGTAAACAGCCATGAGATGTTTTCTACTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTGAGAGCTTATTGTAAACAGCCATGAGATGTTTTCTACTTTTC  150

seq1  CTCTACTTCCTGATGTTGAAGTTTGAAATGTGTGTTTAGGTATTTTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTCCTGATGTTGAAGTTTGAAATGTGTGTTTAGGTATTTTTGGG  200

seq1  TTATGTTCTATTAGGGAAAACATCACTTTTATGTATGTTGGGGGGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCTATTAGGGAAAACATCACTTTTATGTATGTTGGGGGGATATG  250

seq1  TTCATGTGTATATATGCACATGGTGCGTGTGTATGGAGACTAGAGGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGTATATATGCACATGGTGCGTGTGTATGGAGACTAGAGGTTGA  300

seq1  CTTTAGCTTTCTTTCTTGCATGCTCTCTGTTCTCTTTATGTAGCCCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTTTCTTTCTTGCATGCTCTCTGTTCTCTTTATGTAGCCCTGGG  350

seq1  TGTAGACCAGGCTGGTTACAAACTCAGAGAGCTGCCTACCTCTGCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGTTACAAACTCAGAGAGCTGCCTACCTCTGCCTTCC  400

seq1  TGAGTGCTGCAATGAAAGGTTTGTGCCATTATGCCCAGCTTTTCCACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGCAATGAAAGGTTTGTGCCATTATGCCCAGCTTTTCCACTTA  450

seq1  ATTTTTTGAGACAAAAACTCTCACTCACGTTTCTAAGCTGGCTGGCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGAGACAAAAACTCTCACTCACGTTTCTAAGCTGGCTGGCCAGT  500

seq1  GAGCTCTAGGACTGCACCTGGTCTGTGTGTCCCTCAGTGCTGCATTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTAGGACTGCACCTGGTCTGTGTGTCCCTCAGTGCTGCATTGCTT  550

seq1  CTGTGAGTACCTTTTACATGGTTTCTGAGGATTCAAGCCCTTTTGCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTACCTTTTACATGGTTTCTGAGGATTCAAGCCCTTTTGCTTAC  600

seq1  AAGACTTTCTTCTGCTCAAGACAGGGTTTCTCTGTGTTGCCCTGGCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTCTTCTGCTCAAGACAGGGTTTCTCTGTGTTGCCCTGGCTGTT  650

seq1  GTAGAACTCCATCTGTGGTCTCAAACTCACTTGCCTCTGCCTCCCGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTCCATCTGTGGTCTCAAACTCACTTGCCTCTGCCTCCCGAGTG  700

seq1  CTGAGATTAAAGGTGTGCCCTCACCCCTCTAGCCTGCTTCTGGAATTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTAAAGGTGTGCCCTCACCCCTCTAGCCTGCTTCTGGAATTTTA  750

seq1  TATAGTCAGGATAGGTTTGTTTTATGGAAATAGAAGCGACTAGGTTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCAGGATAGGTTTGTTTTATGGAAATAGAAGCGACTAGGTTTCAT  800

seq1  GGAGCTTGGAAACTGCTGTTCTGTGAAAGTGAATGTTGTGTTTAGTGAGT  850
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTT-GTAACTGCTGTTCTGTGAAAGTGAATGTTGTGTTTAGTGAGT  849

seq1  CAGAATGATGTGACTTTACTTGATGTATGTACTGTAAGCAAACTCTTGAC  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGAATGATGTGACTTTACTTGATGTATGTACTGTAAGC-AACTCTTGAC  898

seq1  AGAATTGTGCTCCTTGCTTGACATTACAGATTTATATTT-AGGGGAAAGA  949
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAAATGTGCTCCTTGCTTGACATTACAGATTTATATTTAAGGGGAAAGA  948

seq1  TGAACTGAATTTAGTTGTTTGGGTAGGTTTTTATCTTTAAAAATTTAGAT  999
      |||||||||||||||  |||||||||||||||| | ||||||| ||||||
seq2  TGAACTGAATTTAGT--TTTGGGTAGGTTTTTA-CCTTAAAAAGTTAGAT  995

seq1  GTTTAG  1005
      ||||||
seq2  GTTTAG  1001

seq1: chr18_32087269_32087345
seq2: B6Ng01-078O13.g_73_149 (reverse)

seq1  TCCCCCATACCCTCCCCCCCAACCGAGGCTCTTAGAGTTCTCGTCATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATACCCTCCCCCCCAACCGAGGCTCTTAGAGTTCTCGTCATCTT  50

seq1  CATTTTACTGGTCTAGCATGGTGCCTA  77
      |||||||||||||||||||||||||||
seq2  CATTTTACTGGTCTAGCATGGTGCCTA  77