BAC Information

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BAC

Clone NameB6Ng01-079P08
Chromosome18 (Build37)
Map Location 68,136,527 - 68,215,979
singlet/doubletdoublet
Overlap geneD18Ertd653e
Upstream geneGnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939
Downstream gene4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079P08.bB6Ng01-079P08.g
ACCDH895225DH895226
length1,1571,070
definitionDH895225|Mus musculus domesticus DNA, BAC clone: B6Ng01-079P08, 5' end.DH895226|Mus musculus domesticus DNA, BAC clone: B6Ng01-079P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,136,527 - 68,137,688)(68,214,898 - 68,215,979)
sequence
gaattctgtgggtcttgcaggacttggcatgaaatgacattctaggatgg
gaaaggagctgtgtaggaaagggtctctgtggactattccacggaggaca
gggatgccgtgagaactgctgctgcatcaggcctctcaggccagattgat
tagattggggagctgaaggaagagctaggaacctcccgtgtgtggcatgg
aagaggagggtggatctgagtctgccttagtacccagagtagttgtccct
gttcataaagggggaaggagcaggtttcattactgttttattgtaaaaag
gtgatggaatattggtgtctgtcttacagcctaggtttttggcccgactt
tcagcatatgccccctttgcaattagtcaccttgtagaaaacgacttgcc
acttattgaggacattggcaatgttagtggtcgtccaggaaccaaactga
gtttcttggcaggaaaggtttgatttaaagaggtttgattcttctaggag
aaggagttctgtgtgcacacaaggttttaacttaattattttcttggaaa
actgtagagctgtggttaaaatatgctaactcaggaccaactgctccaaa
tgcagcaggaagtctgggcaaatatagactgtttatctttgagtccaccc
tcttgatatttgaggcatgctgtttaggtgtggaaatggttcttctccta
atttaggtccctaaacacaaacgtggtggggttttcccatgttcccatgc
atacagatcatcaattcacgcgaatcacctaagccggactgggcagtaag
tagttttttaaaaagttaagtttctttccttctctgagctctctctgctt
ggaatcatagctcgcctttgttggtccaggttggaaactgaatctgagac
acattcctgatcctgcatcaataacctgcttttgaacacctcccccttcc
cagccctaccccacccggacgattcttgtatactttaaagtttgagaaga
ctgagttaaaacagtgaaaggtttctgaagtgttacttggcttttgggat
cagcattttattgggggcaactgggttaaatccgatgaatgctagcaggt
gtgaactgaggggcagcttggatactctggtaaaacagcttaccttaact
ctagcaa
gaattcttacacttttaaacagataatgagtgtgagacactaataccggg
taagtgctaaggaattccagctctgcggttactacccacgacctcagcat
ttggaggaaaaaaatggccagatacatccatctccagtccatatgtaacc
caaatggatgcaaaatgattttcatttcatggtttgtgaagttgtcttct
ctctctctctctctttttctctctctctctctctcaggttctcaatagac
aaaaaacaaagctcgaaaccatcccatgtcacctaaaattaacaacgggc
gaaaagcagaggagagggtacagaattagaggagatgtgtgggaaggatt
aggaatgaaatgtggcagaagaagagagagaattttgcctttaaagggaa
aaaagcttctcgatatccattttttttcatggtttgataccaaaatattg
gaatgtgagagcggcgctggcaagagcatttagctgtggttttgcttctc
ctgtcagagcgttactgcaggcaaccgggaccctccctcctcttccctct
ttgactcactgtctgggtgaagcgctagcttttttataaggccttcatgt
gcacgtctcaagctttccccagggcccaagaaaggaacaataccgccaag
acatcctaccaacctcccctgacaaacagaggaccgtcccagagcctaaa
ctctggcctctccgacccccactgtgtcttcacacacgggctcacggtga
acagacatgagcagaacaggaacaaccatttctcacatcaccattgccca
tctggcttccagtcgtgcacctatgctatccaggatagaggtcttctgac
catgcgcaaggctcagccttggccggagataatgcacgtttctctgcaca
tcagtaggatgttagagcagaacacctagcatggagtgcaaataatttta
tcacagtttggggtgcgtgtgcatgtgtgtgtgcacgtgtgcgtgtatat
gtgcatgcatgcagtgcaacacacacacatgttgacccatactattgagc
atgcttaatctcattcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68136527_68137688
seq2: B6Ng01-079P08.b_50_1206

seq1  GAATTCTGTGGGTCTTGCAGGACTTGGCATGAAATGACATTCTAGGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGGTCTTGCAGGACTTGGCATGAAATGACATTCTAGGATGG  50

seq1  GAAAGGAGCTGTGTAGGAAAGGGTCTCTGTGGACTATTCCACGGAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGCTGTGTAGGAAAGGGTCTCTGTGGACTATTCCACGGAGGACA  100

seq1  GGGATGCCGTGAGAACTGCTGCTGCATCAGGCCTCTCAGGCCAGATTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCCGTGAGAACTGCTGCTGCATCAGGCCTCTCAGGCCAGATTGAT  150

seq1  TAGATTGGGGAGCTGAAGGAAGAGCTAGGAACCTCCCGTGTGTGGCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGGGAGCTGAAGGAAGAGCTAGGAACCTCCCGTGTGTGGCATGG  200

seq1  AAGAGGAGGGTGGATCTGAGTCTGCCTTAGTACCCAGAGTAGTTGTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGGGTGGATCTGAGTCTGCCTTAGTACCCAGAGTAGTTGTCCCT  250

seq1  GTTCATAAAGGGGGAAGGAGCAGGTTTCATTACTGTTTTATTGTAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAAAGGGGGAAGGAGCAGGTTTCATTACTGTTTTATTGTAAAAAG  300

seq1  GTGATGGAATATTGGTGTCTGTCTTACAGCCTAGGTTTTTGGCCCGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGAATATTGGTGTCTGTCTTACAGCCTAGGTTTTTGGCCCGACTT  350

seq1  TCAGCATATGCCCCCTTTGCAATTAGTCACCTTGTAGAAAACGACTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATATGCCCCCTTTGCAATTAGTCACCTTGTAGAAAACGACTTGCC  400

seq1  ACTTATTGAGGACATTGGCAATGTTAGTGGTCGTCCAGGAACCAAACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGAGGACATTGGCAATGTTAGTGGTCGTCCAGGAACCAAACTGA  450

seq1  GTTTCTTGGCAGGAAAGGTTTGATTTAAAGAGGTTTGATTCTTCTAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGGCAGGAAAGGTTTGATTTAAAGAGGTTTGATTCTTCTAGGAG  500

seq1  AAGGAGTTCTGTGTGCACACAAGGTTTTAACTTAATTATTTTCTTGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTCTGTGTGCACACAAGGTTTTAACTTAATTATTTTCTTGGAAA  550

seq1  ACTGTAGAGCTGTGGTTAAAATATGCTAACTCAGGACCAACTGCTCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGAGCTGTGGTTAAAATATGCTAACTCAGGACCAACTGCTCCAAA  600

seq1  TGCAGCAGGAAGTCTGGGCAAATATAGACTGTTTATCTTTGAGTCCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGGAAGTCTGGGCAAATATAGACTGTTTATCTTTGAGTCCACCC  650

seq1  TCTTGATATTTGAGGCATGCTGTTTAGGTGTGGAAATGGTTCTTCTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATATTTGAGGCATGCTGTTTAGGTGTGGAAATGGTTCTTCTCCTA  700

seq1  ATTTAGGTCCCTAAACACAAACGTGGTGGGGTTTTCCCATGTTCCCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTCCCTAAACACAAACGTGGTGGGGTTTTCCCATGTTCCCATGC  750

seq1  ATACAGATCATCAATTCAGGCGAATCACCTAAGCCGGACTGGGCAGTAAG  800
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATACAGATCATCAATTCACGCGAATCACCTAAGCCGGACTGGGCAGTAAG  800

seq1  TAGTTTTTTAAAAAGTTAAGTTTCTTTCCTTCTCTGAGCTCTCTCTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTTAAAAAGTTAAGTTTCTTTCCTTCTCTGAGCTCTCTCTGCTT  850

seq1  GGAATCATAGCTCGCCTTTGTTGGTCCAGGTTGGAAACTGAATCTGAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCATAGCTCGCCTTTGTTGGTCCAGGTTGGAAACTGAATCTGAGAC  900

seq1  ACATTCCTGATCCTGCATCAATAACCTGCTTTTGAACACCTCCCCCCTCC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATTCCTGATCCTGCATCAATAACCTGCTTTTGAACACCTCCCCCTTCC  950

seq1  CAGCCCTACCCCACCCGGACGATTCTTGTATACTTTAAAGTTTGAGAAGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGCCCTACCCCACCCGGACGATTCTTGTATACTTTAAAGTTTGAGAA-G  999

seq1  ACTGAGTTAAAACAGTTGAAAGGTTTCTGAAGTG-TACTTGGC-TTTGGG  1048
      ||||||||||||||| |||||||||||||||||| |||||||| ||||||
seq2  ACTGAGTTAAAACAG-TGAAAGGTTTCTGAAGTGTTACTTGGCTTTTGGG  1048

seq1  ATCAGCATTTTATTGGGGGCAGCTGGGTTTAAATCCGATGAATGCTAGCA  1098
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  ATCAGCATTTTATTGGGGGCAACTGGG-TTAAATCCGATGAATGCTAGCA  1097

seq1  GGTGTGAACTGA-GGGCAGCTTGGATACTCGGGTTACAAACCAGCCTTAA  1147
      |||||||||||| ||||||||||||||||| |||   ||| ||||  | |
seq2  GGTGTGAACTGAGGGGCAGCTTGGATACTCTGGT---AAAACAGC--TTA  1142

seq1  CACTAACTCTAGCAA  1162
      |  ||||||||||||
seq2  CCTTAACTCTAGCAA  1157

seq1: chr18_68214898_68215979
seq2: B6Ng01-079P08.g_70_1139 (reverse)

seq1  AGAAGAGATGAGATTAAGCAATGCCTCATAGGTATGGGTCAACATGTGTG  50
      |||||| |||||||||||| ||| ||||   |||||||||||||||||||
seq2  AGAAGA-ATGAGATTAAGC-ATG-CTCAATAGTATGGGTCAACATGTGTG  47

seq1  TGTGTGTGCACTTGCATGCATGCACATATACACGCACACGTGCACACACA  100
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGT-TGCAC-TGCATGCATGCACATATACACGCACACGTGCACACACA  95

seq1  CATGCACACGCACCCCAAACTTGTTGATTAAAATTATTTTGCACTCCATG  150
      |||||||||||||||||||||   ||| |||||||| |||||||||||||
seq2  CATGCACACGCACCCCAAACT--GTGA-TAAAATTA-TTTGCACTCCATG  141

seq1  CTAGGTTGTTCTGCTCTAACATCCTACTGATGTGCAGAGAAACCGTGCAT  200
      ||||| |||||||||||||||||||||||||||||||||||| |||||| 
seq2  CTAGG-TGTTCTGCTCTAACATCCTACTGATGTGCAGAGAAA-CGTGCA-  188

seq1  TTATCTCCGGCCAAGGCTGAGCCTTGCGCATGGTCAGAAGACCTCTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCCGGCCAAGGCTGAGCCTTGCGCATGGTCAGAAGACCTCTATCC  238

seq1  TGGATAGCATAGGTGCACGACTGGAAGCCAGATGGGCAATGGTGATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGCATAGGTGCACGACTGGAAGCCAGATGGGCAATGGTGATGTGA  288

seq1  GAAATGGTTGTTCCTGTTCTGCTCATGTCTGTTCACCGTGAGCCCGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTTGTTCCTGTTCTGCTCATGTCTGTTCACCGTGAGCCCGTGTG  338

seq1  TGAAGACACAGTGGGGGTCGGAGAGGCCAGAGTTTAGGCTCTGGGACGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACAGTGGGGGTCGGAGAGGCCAGAGTTTAGGCTCTGGGACGGT  388

seq1  CCTCTGTTTGTCAGGGGAGGTTGGTAGGATGTCTTGGCGGTATTGTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTTGTCAGGGGAGGTTGGTAGGATGTCTTGGCGGTATTGTTCCT  438

seq1  TTCTTGGGCCCTGGGGAAAGCTTGAGACGTGCACATGAAGGCCTTATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGCCCTGGGGAAAGCTTGAGACGTGCACATGAAGGCCTTATAAA  488

seq1  AAAGCTAGCGCTTCACCCAGACAGTGAGTCAAAGAGGGAAGAGGAGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGCGCTTCACCCAGACAGTGAGTCAAAGAGGGAAGAGGAGGGAG  538

seq1  GGTCCCGGTTGCCTGCAGTAACGCTCTGACAGGAGAAGCAAAACCACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCGGTTGCCTGCAGTAACGCTCTGACAGGAGAAGCAAAACCACAGC  588

seq1  TAAATGCTCTTGCCAGCGCCGCTCTCACATTCCAATATTTTGGTATCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTCTTGCCAGCGCCGCTCTCACATTCCAATATTTTGGTATCAAA  638

seq1  CCATGAAAAAAAATGGATATCGAGAAGCTTTTTTCCCTTTAAAGGCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAAAAAAATGGATATCGAGAAGCTTTTTTCCCTTTAAAGGCAAAA  688

seq1  TTCTCTCTCTTCTTCTGCCACATTTCATTCCTAATCCTTCCCACACATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTTCTTCTGCCACATTTCATTCCTAATCCTTCCCACACATCT  738

seq1  CCTCTAATTCTGTACCCTCTCCTCTGCTTTTCGCCCGTTGTTAATTTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATTCTGTACCCTCTCCTCTGCTTTTCGCCCGTTGTTAATTTTAG  788

seq1  GTGACATGGGATGGTTTCGAGCTTTGTTTTTTGTCTATTGAGAACCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATGGGATGGTTTCGAGCTTTGTTTTTTGTCTATTGAGAACCTGAG  838

seq1  AGAGAGAGAGAGAGAAAAAGAGAGAGAGAGAGAGAAGACAACTTCACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAAAAAGAGAGAGAGAGAGAGAAGACAACTTCACAAA  888

seq1  CCATGAAATGAAAATCATTTTGCATCCATTTGGGTTACATATGGACTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAATGAAAATCATTTTGCATCCATTTGGGTTACATATGGACTGGA  938

seq1  GATGGATGTATCTGGCCATTTTTTTCCTCCAAATGCTGAGGTCGTGGGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGTATCTGGCCATTTTTTTCCTCCAAATGCTGAGGTCGTGGGTA  988

seq1  GTAACCGCAGAGCTGGAATTCCTTAGCACTTACCCGGTATTAGTGTCTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCGCAGAGCTGGAATTCCTTAGCACTTACCCGGTATTAGTGTCTCA  1038

seq1  CACTCATTATCTGTTTAAAAGTGTAAGAATTC  1082
      ||||||||||||||||||||||||||||||||
seq2  CACTCATTATCTGTTTAAAAGTGTAAGAATTC  1070