BAC Information

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BAC

Clone NameB6Ng01-080K05
Chromosome2 (Build37)18 (Build37)
Map Location 80,331,392 - 80,331,94387,189,278 - 87,190,397
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb
Downstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080K05.bB6Ng01-080K05.g
ACCDH895717DH895718
length8981,127
definitionDH895717|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K05, 5' end.DH895718|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,331,392 - 80,331,943)(87,189,278 - 87,190,397)
sequence
gaattcctgatctttccaagacttttatcttgactgggtgttagattttg
tcaaatgctttctctatgtctaaggagatgatcacgtgtttttttctttg
aatttgtttatataatggattacattgatggatttccatatattaaaact
tccctgcatccctgggatgaaagctacttggtcaggatggataattgttt
taatgtgttcttggatttggttagcgagaattttttgagacttttgcatc
gatattcataagaaatattggtctgaagttctctattttagttgggtctt
tctgtggtttaggtatcagagtaattgtggcttcatagaatgagttgggt
agagtacattctgcttctattttgtggaatagtttgtgaagaattggaat
tagatcttctttgacggtctgatagaactctgcactaaacccatctggtc
ctgggcttttttttttggggggggggagactattaatgactgcttctatt
tctttaggggatataggactgtttaaataattaacctgatcttgatttac
ctttgttctttggtatctggtatccatctagaaatttgtccatttaatcc
aggttctccagttttgttgagtatagccttttgtagaaggatctgatggt
gttttggatttcttcaggatctgttgttatgtctcccttttcatttctga
ttttgttaattaggatgctgtctctgtgctctctagtgagtctggctaag
ggtttatctatcttgctgattttctcaaagaaccaggtcctcaattggta
attctttgaattgttcttcttgtttccacttggttgatttcgcccctgag
tttgattatttcctgccatctactcctcttgggtgatttgcttgcttt
gaattcatctattaacttccataaatgaaaatattttataatttctaaac
tgaggcagtaggctctaacggttttacattcattttcttaaattcatagg
gatttaaaaaaaataatggatctgatgtgtgtgttggggggtaagtgtta
tgcatgtgtataagtgtagatacacttgcctctctgtgtaattgtggaat
ccagatgtcaacatccagtggacagcatccaggtacatataaaatgtact
aggccaaactcagttatttatgtggcttagtaactgattttcataaggaa
actcatttttacacaaatccagtgaattcttttggaggaaaaaaggtctc
atacttacaaataataaatcattaataaaatattaaagtatatttaaaga
ttctaaagtaattactcaattaatataaacagcttaattgaagtgggact
tttacaaattaagtatagtgtatttaaaataaattacacaaatttctatc
taggagctgattgcttggatgtgaattaatatctttgcctccactcagtc
atttctcttggtgaacaaaacaaaaccaacaaaacaaacaaaaaacttct
ttgtatttttcaaagtatataacacttcactacctaaattttactagatt
aagtttttctgtgaccaaaactgctttttatttttttattagttgagaga
caaaactatgtgtttgtgtggatgatatttaagtagatgattaaatctaa
aaatttaaacgtcagtttgcatagctttattttttctgagaacacataac
agtctttgcaattattaagaataaaaatatattgtcaatgttactaatta
tcatcatgcattaaattatttgataaactagcacacacactctcataaca
tacacgcgtacacacatatacacatattagtcacacacacacacaccatc
tcactcacacacatgctcaaacactaacccattttcctgtgtatcttctc
tcatcaaaactccccagtctctgtttccttcccactatattttcaacttg
taagctctggcacttttctatggaatctcgcccatgggattaaaaccttg
gggtcttgctttatgtgtctgggctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80331392_80331943
seq2: B6Ng01-080K05.b_45_599 (reverse)

seq1  CAAAGTTAAATCAGGATCAGGTTAATGATCTAAACAGTCCTATATCCCCT  50
      ||||| ||||||| |||||||||||| || ||||||||||||||||||||
seq2  CAAAGGTAAATCAAGATCAGGTTAATTATTTAAACAGTCCTATATCCCCT  50

seq1  AAAGAAATAGAAGCAGCCATTAATAGTCTCCCAACC------AAAAAAAG  94
      |||||||||||||||| |||||||||||||||  ||      ||||||||
seq2  AAAGAAATAGAAGCAGTCATTAATAGTCTCCCCCCCCCCAAAAAAAAAAG  100

seq1  CCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAG  144
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCGTCAAAGAAG  150

seq1  ATCTAATTCCAGTTCTTCACAAACAATTCCACAAAATAGAAGCAGAAGGT  194
      ||||||||||| |||||||||||| |||||||||||||||||||||| ||
seq2  ATCTAATTCCAATTCTTCACAAACTATTCCACAAAATAGAAGCAGAATGT  200

seq1  ACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATACCTAAACC  244
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACCCAACTCATTCTATGAAGCCACAATTACTCTGATACCTAAACC  250

seq1  ACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGA  294
      ||||||||||||||| || |||||||||||||||||||| |  |||||||
seq2  ACAGAAAGACCCAACTAAAATAGAGAACTTCAGACCAATATTTCTTATGA  300

seq1  ATATCGATGATAAAATACTCAATAAAATTCTCGCTAACCAAATCCAAGAA  344
      |||||||||  ||||  ||||| |||||||||||||||||||||||||||
seq2  ATATCGATG-CAAAAGTCTCAA-AAAATTCTCGCTAACCAAATCCAAGAA  348

seq1  CACATCAAAACCATCATCCATCCTGACCAAGTAGGTTTCATTCCAGGGAT  394
      ||||| ||||| || ||||||||||||||||||| |||||| ||||||||
seq2  CACATTAAAACAATTATCCATCCTGACCAAGTAGCTTTCATCCCAGGGAT  398

seq1  GCAGGGATGGTTTAATATATGGAAATTCATCAACGTAATCCACTATATAA  444
      ||||||| | |||||||||||||||| |||||| |||||||| |||||||
seq2  GCAGGGAAGTTTTAATATATGGAAATCCATCAATGTAATCCATTATATAA  448

seq1  ACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCGGAGAAA  494
      ||||| ||||||| ||||| ||| |||||||||| |||||    ||||||
seq2  ACAAATTCAAAGA-AAAAAACACGTGATCATCTCCTTAGACATAGAGAAA  497

seq1  GCATTTGACAAAATCTAACACCCATTCATGATAAAAGCCTTGGAAAGATC  544
      |||||||||||||||||||||||| ||| |||||||| ||||||||||||
seq2  GCATTTGACAAAATCTAACACCCAGTCAAGATAAAAGTCTTGGAAAGATC  547

seq1  AGGAATTC  552
      ||||||||
seq2  AGGAATTC  555

seq1: chr18_87189278_87190397
seq2: B6Ng01-080K05.g_68_1194 (reverse)

seq1  TTAG-CCAGACACATAAAAGCAAGTACCACAAGGTGTTAATCACATGGGC  49
      |||| |||||||||| |||||||| ||| |||||| |||||| |||||||
seq2  TTAGCCCAGACACAT-AAAGCAAG-ACCCCAAGGTTTTAATCCCATGGGC  48

seq1  GAGATCCAATAGAAAAGTGACAGAGCTTACAGAGTAGAAAATATGATAGG  99
      ||||| | ||||||||||| ||||||||||| ||| ||||||||  | ||
seq2  GAGATTCCATAGAAAAGTGCCAGAGCTTACA-AGTTGAAAATATAGTGGG  97

seq1  GAGG-AACAGAGACTGGGGAGTTTGTGATGAGAGAAGATACACAGGAAAA  148
       ||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGGAAACAGAGACTGGGGAGTTT-TGATGAGAGAAGATACACAGGAAAA  146

seq1  TGTGTTAGTGTTTGAGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  198
      || ||||||||||||||||||||||| ||| |   |||||||||||||||
seq2  TGGGTTAGTGTTTGAGCATGTGTGTGAGTGAGATGGTGTGTGTGTGTGTG  196

seq1  ACT-ATATGTGTATATGTGTGTATGTGTGTATG-TATGAGAGTGTGTGTG  246
      ||| ||||||||||||||||||| | ||||||| ||||||||||||||||
seq2  ACTAATATGTGTATATGTGTGTACGCGTGTATGTTATGAGAGTGTGTGTG  246

seq1  CTAGTTTATCAAAT-ATTTATTGCATGATGATAATTAGTAACATTGACAA  295
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  CTAGTTTATCAAATAATTTAATGCATGATGATAATTAGTAACATTGACAA  296

seq1  TATA-TTTTATTCTAAAT-ATTGCAAAGACTGTTATGTGTTCTCAGAAAA  343
      |||| ||||||||| ||| |||||||||||||||||||||||||||||||
seq2  TATATTTTTATTCTTAATAATTGCAAAGACTGTTATGTGTTCTCAGAAAA  346

seq1  AATAAAGCTATGCAAACTGACGTTT-AATTTTTAGATTTAATCATCTACT  392
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATAAAGCTATGCAAACTGACGTTTAAATTTTTAGATTTAATCATCTACT  396

seq1  TAAATATCATCCACACAAACACATAGTTTTGTCTCTCAACTAATAAAAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCATCCACACAAACACATAGTTTTGTCTCTCAACTAATAAAAAA  446

seq1  --TAAAAGCAGTTTTGGTCACAGAAAAACTTAATCTAGTAAAATTTAGGT  490
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCAGTTTTGGTCACAGAAAAACTTAATCTAGTAAAATTTAGGT  496

seq1  AGTGAAGTGTTATATACTTTG-AAAATACAAAGAAGTTTTTTGTTTGTTT  539
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTGAAGTGTTATATACTTTGAAAAATACAAAGAAGTTTTTTGTTTGTTT  546

seq1  TGTTGGTTTTGTTTTGTTCACCAAGAGAAATGACTGAGTGGAGGCAAAGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTTTGTTTTGTTCACCAAGAGAAATGACTGAGTGGAGGCAAAGA  596

seq1  TATTAATTCACATCCAAGCAATCAGCTCCTAGATAGAAATTTGTGTAATT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTCACATCCAAGCAATCAGCTCCTAGATAGAAATTTGTGTAATT  646

seq1  TATTTTAAATACACTATACTTAATTTGTAAAAGTCCCACTTCAATTAAGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAATACACTATACTTAATTTGTAAAAGTCCCACTTCAATTAAGC  696

seq1  TGTTTATATTAATTGAGTAATTACTTTAGAATCTTTAAATATACTTTAAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATTAATTGAGTAATTACTTTAGAATCTTTAAATATACTTTAAT  746

seq1  ATTTTATTAATGATTTATTATTTGTAAGTATGAGACCTTTTTTCCTCCAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTAATGATTTATTATTTGTAAGTATGAGACCTTTTTTCCTCCAA  796

seq1  AAGAATTCACTGGATTTGTGTAAAAATGAGTTTCCTTATGAAAATCAGTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCACTGGATTTGTGTAAAAATGAGTTTCCTTATGAAAATCAGTT  846

seq1  ACTAAGCCACATAAATAACTGAGTTTGGCCTAGTACATTTTATATGTACC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCCACATAAATAACTGAGTTTGGCCTAGTACATTTTATATGTACC  896

seq1  TGGATGCTGTCCACTGGATGTTGACATCTGGATTCCACAATTACACAGAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTGTCCACTGGATGTTGACATCTGGATTCCACAATTACACAGAG  946

seq1  AGGCAAGTGTATCTACACTTATACACATGCATAACACTTACCCCCCAACA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTGTATCTACACTTATACACATGCATAACACTTACCCCCCAACA  996

seq1  CACACATCAGATCCATTATTTTTTTTAAATCCCTATGAATTTAAGAAAAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATCAGATCCATTATTTTTTTTAAATCCCTATGAATTTAAGAAAAT  1046

seq1  GAATGTAAAACCGTTAGAGCCTACTGCCTCAGTTTAGAAATTATAAAATA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAAAACCGTTAGAGCCTACTGCCTCAGTTTAGAAATTATAAAATA  1096

seq1  TTTTCATTTATGGAAGTTAATAGATGAATTC  1120
      |||||||||||||||||||||||||||||||
seq2  TTTTCATTTATGGAAGTTAATAGATGAATTC  1127