BAC Information

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BAC

Clone NameB6Ng01-081J14
Chromosome18 (Build37)
Map Location 41,208,599 - 41,380,941
singlet/doubletdoublet
Overlap genenone
Upstream geneYipf5, Kctd16, EG225416
Downstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081J14.bB6Ng01-081J14.g
ACCDH896406DH896407
length1,113487
definitionDH896406|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J14, 5' end.DH896407|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,208,599 - 41,209,720)(41,380,449 - 41,380,941)
sequence
gaattcactgataactagagcttctaagaaagcttgactgggtatcactc
tatctgacattcaagtctattgtatgatgctgatcatcatgctcctttga
gctagagatcaattaaaaccaaacaaagtaggagtggcctgagcccactg
tatgattgtctgcacatacagtggatgttatttaacagaggtaacccagt
acttttcaaaaaggcatctcacttacctcagagatagagagagtgccata
tgtctcgtgatatattaagatattttatggagctacggaaagttatagaa
caaatcaacaaccaaaaatttgctgacagctcgcagaaatggttggcttc
aagctgaagtttttcttgttctgttcttaagggattttactctctcccta
agtatatgtaccacagatgtttaagcctcatgtagggagatgtggcactg
cactgattatggtttttttaacctttatagtatttcattatatctcatct
gtttctcacagatatggcaagcatgggtttaacttaacaataaattggag
tatttaacagaaaattagaacttaggttggatttatatgggtaaccataa
ctgaaaggctcaatctaaactttgtcatattatttttttgcagtcttaaa
gtataatacaactagaattcaaattctgtttgctacatgtcacccttaaa
tatttgaaccaatttaaaatcagcatgatcttcagacaccaaccgcaact
ctatagcagatgcctagaagcacttgctgacaggagcctggcatggttgt
cccctgagaggctctgccagcatctgactaatacagatcagatgctcaca
gccaacctcagactgaaactggggaccccaatggacagctaagggaagga
ctgtaggagctgaaggggcttgccactcaataggagaacaacattttcaa
cttaccagaaacccggagctccagggtctaaacgccaaccaaggagatca
ctgggatgaattcttggctctactacaatataaaatcttaactgcatgaa
tggagggcaggcccttggttctggtgaaggctgtattcctaagctagggg
gtgtgatggtttg
ttgtttaactctataccctatttttttattggattgtttggtttttatgg
aggttagcttcttgaggtttttgtatatttgggatattagccctctatca
gatatggggttagtgaagaatttttcccagtctgtaggttgctgatttga
agcttttctgtatgacagaaaacaaagaaacaaaatagaaatatggaaaa
attaataatgggattaataacttttaatttaacaagaggacaatagcaac
catttgaaaataatgatgtttcaggattcttggtgtttttggtgataata
agtacaagaacatgattgatactttaaatacaaaagtcgactgtgataag
ggaaagacagttattccatagctaatattcttaaccttggggatataatg
tccagtgtttattaaagttgtattgtaatcttttatgaattccctccttg
tataaagtacttttcaaataagagatagtaatgtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_41208599_41209720
seq2: B6Ng01-081J14.b_43_1155

seq1  GAATTCACTGATAACTAGAGCTTCTAAGAAAGCTTGACTGGGTATCACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGATAACTAGAGCTTCTAAGAAAGCTTGACTGGGTATCACTC  50

seq1  TATCTGACATTCAAGTCTATTGTATGATGCTGATCATCATGCTCCTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACATTCAAGTCTATTGTATGATGCTGATCATCATGCTCCTTTGA  100

seq1  GCTAGAGATCAATTAAAACCAAACAAAGTAGGAGTGGCCTGAGCCCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGATCAATTAAAACCAAACAAAGTAGGAGTGGCCTGAGCCCACTG  150

seq1  TATGATTGTCTGCACATACAGTGGATGTTATTTAACAGAGGTAACCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGTCTGCACATACAGTGGATGTTATTTAACAGAGGTAACCCAGT  200

seq1  ACTTTTCAAAAAGGCATCTCACTTACCTCAGAGATAGAGAGAGTGCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAAAAAGGCATCTCACTTACCTCAGAGATAGAGAGAGTGCCATA  250

seq1  TGTCTCGTGATATATTAAGATATTTTATGGAGCTACGGAAAGTTATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGTGATATATTAAGATATTTTATGGAGCTACGGAAAGTTATAGAA  300

seq1  CAAATCAACAACCAAAAATTTGCTGACAGCTCGCAGAAATGGTTGGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAACAACCAAAAATTTGCTGACAGCTCGCAGAAATGGTTGGCTTC  350

seq1  AAGCTGAAGTTTTTCTTGTTCTGTTCTTAAGGGATTTTACTCTCTCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAAGTTTTTCTTGTTCTGTTCTTAAGGGATTTTACTCTCTCCCTA  400

seq1  AGTATATGTACCACAGATGTTTAAGCCTCATGTAGGGAGATGTGGCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATGTACCACAGATGTTTAAGCCTCATGTAGGGAGATGTGGCACTG  450

seq1  CACTGATTATGGTTTTTTTAACCTTTATAGTATTTCATTATATCTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTATGGTTTTTTTAACCTTTATAGTATTTCATTATATCTCATCT  500

seq1  GTTTCACACAGATATGGCAAGCATGGGTTTAACTTAACAATAAATTGGAG  550
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCACAGATATGGCAAGCATGGGTTTAACTTAACAATAAATTGGAG  550

seq1  TATTTAACAGAAAATTAGAACTTAGGTTGGATTTATATGGGTAACCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACAGAAAATTAGAACTTAGGTTGGATTTATATGGGTAACCATAA  600

seq1  CTGAAAGGCTCAATCTAAACTTTGTCATATTA-TTTTTTGCAGTCTT-AA  648
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  CTGAAAGGCTCAATCTAAACTTTGTCATATTATTTTTTTGCAGTCTTAAA  650

seq1  GTATAATACAACTAGAATTCAAATTCTGTTTGCTACATGTCACCCTTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATACAACTAGAATTCAAATTCTGTTTGCTACATGTCACCCTTAAA  700

seq1  TATTTGAACCAATTTAAAATCAGCATGATCTTCAGACACCAACCCCAACT  748
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATTTGAACCAATTTAAAATCAGCATGATCTTCAGACACCAACCGCAACT  750

seq1  CTATAGCAGATGCCAAGAAGCACTTGCTGACAGGAGCCTGGCATGGCTGT  798
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  CTATAGCAGATGCCTAGAAGCACTTGCTGACAGGAGCCTGGCATGGTTGT  800

seq1  CCCCTGAGAGGCTCTGCCAGCATCTGACTAATACAGATGCAGATGCTCAC  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCCTGAGAGGCTCTGCCAGCATCTGACTAATACAGAT-CAGATGCTCAC  849

seq1  AGCCAACCATCAGACTGAGACTGGGGACCCCAATGGAAGAGCTAAGGGAA  898
      |||||||| ||||||||| ||||||||||||||||| | |||||||||||
seq2  AGCCAACC-TCAGACTGAAACTGGGGACCCCAATGG-ACAGCTAAGGGAA  897

seq1  GGACTGAAGGAGCTGAAGGGCATTGCAACCCAATAGGAAGAACAACAATA  948
      |||||| |||||||||||||  |||| || ||||||| ||||||||| | 
seq2  GGACTGTAGGAGCTGAAGGGGCTTGCCACTCAATAGG-AGAACAACATTT  946

seq1  TCAACTTACCAGAAACCCAGAGCTCCCAGGGTCTAAACCACCAACCAAAG  998
      |||||||||||||||||| ||||| |||||||||||| | |||||||| |
seq2  TCAACTTACCAGAAACCCGGAGCT-CCAGGGTCTAAA-CGCCAACCAAGG  994

seq1  AGTACACATGGATGAATCCTTGGCTCCAACTACATATATAGAAGCCTTAT  1048
      ||  |||  |||||||| ||||||| | |||||| ||||| ||  |||| 
seq2  AGATCACTGGGATGAATTCTTGGCT-CTACTACA-ATATA-AAATCTTAA  1041

seq1  CTGGCATGAATGGGAGGGGAGGCCCTTGGTCCT-GTGGAGGCTTGATATC  1097
      || |||||||| |||||| ||||||||||| || ||| |||||  ||  |
seq2  CT-GCATGAAT-GGAGGGCAGGCCCTTGGTTCTGGTGAAGGCTGTATTCC  1089

seq1  TCAGCATAAGGGGTGTGATGGTTTG  1122
      | ||| || ||||||||||||||||
seq2  TAAGC-TAGGGGGTGTGATGGTTTG  1113

seq1: chr18_41380449_41380941
seq2: B6Ng01-081J14.g_71_563 (reverse)

seq1  TAGACATTACTATCTCTTATTTGAAAAGTACTTTATACATGGAGGGAATT  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGACATTACTATCTCTTATTTGAAAAGTACTTTATACAAGGAGGGAATT  50

seq1  CATAAAAGATTACAATACAACTTTAATAAACACTGGACATTATATCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGATTACAATACAACTTTAATAAACACTGGACATTATATCCCCA  100

seq1  AGGTTAAGAATATTAGCTATGGAATAACTGTCTTTCCCTTATCACAGTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAGAATATTAGCTATGGAATAACTGTCTTTCCCTTATCACAGTCG  150

seq1  ACTTTTGTATTTAAAGTATCAATCATGTTCTTGTACTTATTATCACCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTATTTAAAGTATCAATCATGTTCTTGTACTTATTATCACCAAA  200

seq1  AACACCAAGAATCCTGAAACATCATTATTTTCAAATGGTTGCTATTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAGAATCCTGAAACATCATTATTTTCAAATGGTTGCTATTGTCC  250

seq1  TCTTGTTAAATTAAAAGTTATTAATCCCATTATTAATTTTTCCATATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTAAATTAAAAGTTATTAATCCCATTATTAATTTTTCCATATTTC  300

seq1  TATTTTGTTTCTTTGTTTTCTGTCATACAGAAAAGCTTCAAATCAGCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTCTTTGTTTTCTGTCATACAGAAAAGCTTCAAATCAGCAAC  350

seq1  CTACAGACTGGGAAAAATTCTTCACTAACCCCATATCTGATAGAGGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGACTGGGAAAAATTCTTCACTAACCCCATATCTGATAGAGGGCTA  400

seq1  ATATCCCAAATATACAAAAACCTCAAGAAGCTAACCTCCATAAAAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCAAATATACAAAAACCTCAAGAAGCTAACCTCCATAAAAACCAA  450

seq1  ACAATCCAATAAAAAAATAGGGTATAGAGTTAAACAAGAATTC  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCAATAAAAAAATAGGGTATAGAGTTAAACAAGAATTC  493